19-9006313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006313
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006313
    reference: chr 19
allele count: 1344
allele frequency: 2.397174758320551e-2
allele num: 56066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+31C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+31C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+31C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 8.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 3.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 5.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 6.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 4.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 7.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 3.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 5.25e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 6.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 4.75e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 8.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 7.25e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 6.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 2.75e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 9.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 1.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 7.5e0
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 4.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 2.25e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 6.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 28443
  bin: 2.5e0
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 7.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 7566
  bin: 9.75e1
  variant carriers: 476
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 5.75e1
  variant carriers: 50
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-9006313-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006313
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006313
    reference: chr 19
allele count: 2
allele frequency: 3.567224342738915e-5
allele num: 56066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+31C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+31C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+31C>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28443
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/19-9006315-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006315
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006315
    reference: chr 19
allele count: 2723
allele frequency: 4.27660510114336e-2
allele num: 63672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+29G>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+29G>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+29G>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 7.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 5.25e1
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 5.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 4.25e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 6.25e1
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 8.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 3.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 4.75e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 6.75e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 7.25e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 9.75e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 8.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 7.5e0
  variant carriers: 157
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 9.25e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 24306
  bin: 2.5e0
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 1.75e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 2.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 3.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 7.25e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 6.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 3862
  bin: 6.25e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 7.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 8.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 8623
  bin: 9.75e1
  variant carriers: 1119
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-9006315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006315
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006315
    reference: chr 19
allele count: 2161
allele frequency: 3.39395652720191e-2
allele num: 63672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+29G>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+29G>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+29G>A
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 4.75e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 2.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 6.25e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 7.25e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 5.75e1
  variant carriers: 321
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 6.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 3.75e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 4.25e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 8.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 9.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 7.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 5.25e1
  variant carriers: 363
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 24306
  bin: 2.5e0
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 1.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 7.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 7.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 8623
  bin: 9.75e1
  variant carriers: 829
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 6.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 8.25e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 3.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 2.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 7.5e0
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 5.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 9.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 3862
  bin: 6.25e1
  variant carriers: 83
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

19-9006317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006317
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006317
    reference: chr 19
allele count: 2720
allele frequency: 2.616844009158954e-2
allele num: 103942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+27C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+27C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+27C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 4.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 6.75e1
  variant carriers: 328
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 8.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 6.25e1
  variant carriers: 334
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 3.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.25e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.75e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 9.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 5.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 8.25e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 9.75e1
  variant carriers: 380
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 5.75e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 3.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 145
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 4.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
  all individuals: 5105
  bin: 2.5e0
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 5.75e1
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 4.25e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 4500
  bin: 6.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 8.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 5746
  bin: 6.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 7.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 2.25e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 7.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 17144
  bin: 9.75e1
  variant carriers: 1115
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-9006317-GCCAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006317
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006313
    reference: chr 19
allele count: 2162
allele frequency: 2.080006157280022e-2
allele num: 103942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+23_193+26delGTGG
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+23_193+26delGTGG
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+23_39674+26delGTGG
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 8.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 5.75e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.25e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 3.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 6.75e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 3.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 5.25e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 6.25e1
  variant carriers: 320
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 4.75e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 9.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 9.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 8.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 4.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 17144
  bin: 9.75e1
  variant carriers: 823
genotype quality: GenotypeQuality
  all individuals: 5105
  bin: 2.5e0
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 4.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 7.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 7.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 5.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 2.25e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 5746
  bin: 6.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 9.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 4500
  bin: 6.75e1
  variant carriers: 93
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: GCCAC
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

19-9006320-A-AGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006320
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006322
    reference: chr 19
allele count: 1343
allele frequency: 1.237423064165407e-2
allele num: 108532
alternate allele: AGG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+23_193+24insCC
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+23_193+24insCC
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+23_39674+24insCC
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 6.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 4.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 4.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 5.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 3.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 8.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 6.75e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 7.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 5.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 8.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 9.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 7.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.5e0
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 8.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 6476
  bin: 6.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 8.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 7.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 9.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 24930
  bin: 9.75e1
  variant carriers: 479
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 7.25e1
  variant carriers: 48
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-9006322-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006322
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006322
    reference: chr 19
allele count: 2159
allele frequency: 3.024233085866368e-2
allele num: 71390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+22T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+22T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+22T>C
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 5.25e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 8.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 3.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5172
  bin: 4.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 9.75e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 7.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 6.25e1
  variant carriers: 304
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 4.25e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 7.25e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 5.75e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 6.75e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 9.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 8.75e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 5.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 1.25e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 5.25e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 2.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 3.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 8.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 20534
  bin: 2.5e0
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 2.25e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 9.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 7.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 4777
  bin: 6.25e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 3360
  bin: 6.75e1
  variant carriers: 93
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

19-9006322-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006322
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006320
    reference: chr 19
allele count: 2725
allele frequency: 3.81706121305505e-2
allele num: 71390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+20_193+21delAG
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+20_193+21delAG
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+20_39674+21delAG
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 6.75e1
  variant carriers: 329
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 6.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 5.25e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 9.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 7.75e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 4.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 5.75e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 7.25e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 8.25e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 8.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 5172
  bin: 4.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 9.75e1
  variant carriers: 598
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 1.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 20534
  bin: 2.5e0
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 151
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 3.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 5.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 4777
  bin: 6.25e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 2.25e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 9.25e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 5.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 3360
  bin: 6.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 2.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 7.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 8.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.75e1
  variant carriers: 86
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: ACT
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

19-9006324-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006324
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006324
    reference: chr 19
allele count: 5
allele frequency: 6.516356053694774e-5
allele num: 76730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+20A>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+20A>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+20A>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10932
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11235
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-9006326-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006326
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006324
    reference: chr 19
allele count: 1428
allele frequency: 1.201049656842955e-2
allele num: 118896
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+16_39674+17delTT
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+16_193+17delTT
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+16_193+17delTT
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 4.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 5.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 8.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 6.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 9.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 8.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 7.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 7.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 6.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 9.75e1
  variant carriers: 151
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 7.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 30488
  bin: 9.75e1
  variant carriers: 501
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.5e0
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 7.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 5946
  bin: 6.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 8.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 2593
  bin: 9.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 4927
  bin: 6.75e1
  variant carriers: 62
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: GAA
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-9006329-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006329
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006329
    reference: chr 19
allele count: 1419
allele frequency: 1.264615713674604e-2
allele num: 112208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+15T>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+15T>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+15T>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 6.25e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 4.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 9.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 4.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 6.75e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 8.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 7.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 5.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 8357
  bin: 9.75e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 8.25e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 8.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 5974
  bin: 6.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 2.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.5e0
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 3.25e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 4765
  bin: 6.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 9.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 2.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 2.5e0
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 1.25e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 7.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 3.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 7.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 8.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 4.75e1
  variant carriers: 66
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

19-9006330-T-TCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006330
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006332
    reference: chr 19
allele count: 1433
allele frequency: 1.353188917637727e-2
allele num: 105898
alternate allele: TCC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+13_193+14insGG
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+13_193+14insGG
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+13_39674+14insGG
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 9.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 5.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 8.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 7.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 8.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9192
  bin: 9.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 7.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 6.75e1
  variant carriers: 199
genotype quality: GenotypeQuality
  all individuals: 5227
  bin: 6.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 7.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 4.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 5.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 8.25e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 2.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 8.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 7.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 1.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 5072
  bin: 2.5e0
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 5.25e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 23127
  bin: 9.75e1
  variant carriers: 503
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 1.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.5e0
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 4.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 9.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 3.25e1
  variant carriers: 72
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-9006337-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006337
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006337
    reference: chr 19
allele count: 49
allele frequency: 4.067335148416229e-4
allele num: 120472
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39674+7C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.193+7C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.193+7C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38970
  bin: 9.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5115
  bin: 6.25e1
  variant carriers: 0
hgvs: c.39674+7C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

19-9006351-A-ATTCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006351
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006355
    reference: chr 19
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: ATTCG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39666_39667insCGAA
  hgvsp: ENSP00000381008.2:p.Leu13223ArgfsTer6
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.185_186insCGAA
  hgvsp: ENSP00000472781.1:p.Leu63ArgfsTer6
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.185_186insCGAA
  hgvsp: ENSP00000470885.1:p.Leu63ArgfsTer6
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9900
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38976
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu13223ArgfsTer6
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

19-9006353-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006353
    reference: chr 19
allele count: 1
allele frequency: 8.290499088045101e-6
allele num: 120620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.184C>A
  hgvsp: ENSP00000470885.1:p.Thr62Asn
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39665C>A
  hgvsp: ENSP00000381008.2:p.Thr13222Asn
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.184C>A
  hgvsp: ENSP00000472781.1:p.Thr62Asn
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9901
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38977
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr13222Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS

19-9006353-GTCAGTCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006346
    reference: chr 19
allele count: 1
allele frequency: 8.290499088045101e-6
allele num: 120620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.177_183delAGACTGA
  hgvsp: ENSP00000472781.1:p.Arg60ProfsTer10
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsp: ENSP00000381008.2:p.Arg13220ProfsTer10
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.177_183delAGACTGA
  hgvsp: ENSP00000470885.1:p.Arg60ProfsTer10
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9901
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38977
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg13220ProfsTer10
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: GTCAGTCT
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-9006369-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006369
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006369
    reference: chr 19
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39649T>C
  hgvsp: ENSP00000381008.2:p.Ser13217Pro
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.168T>C
  hgvsp: ENSP00000472781.1:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.168T>C
  hgvsp: ENSP00000470885.1:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9921
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39007
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser13217Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

19-9006370-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006370
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006370
    reference: chr 19
allele count: 55130
allele frequency: 4.602835339890126e-1
allele num: 119774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.167T>C
  hgvsp: ENST00000601404.1:c.167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.167T>C
  hgvsp: ENST00000599436.1:c.167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39648T>C
  hgvsp: ENST00000397910.4:c.39648T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: synonymous
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 9.25e1
  variant carriers: 2678
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 43578
  bin: 9.75e1
  variant carriers: 42194
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 8.75e1
  variant carriers: 2274
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.75e1
  variant carriers: 553
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 1283
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.25e1
  variant carriers: 761
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 8.25e1
  variant carriers: 1969
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 6.75e1
  variant carriers: 997
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 7.75e1
  variant carriers: 1614
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 56547
  bin: 9.75e1
  variant carriers: 54461
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 6.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 6.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 28
hgvs: p.Tyr13216Tyr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

19-9006385-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006385
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006385
    reference: chr 19
allele count: 4868
allele frequency: 4.234295356888124e-2
allele num: 114966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.152T>C
  hgvsp: ENST00000599436.1:c.152T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39633T>C
  hgvsp: ENST00000397910.4:c.39633T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.152T>C
  hgvsp: ENST00000601404.1:c.152T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 6.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 7.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 5.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 7.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 23225
  bin: 9.75e1
  variant carriers: 3979
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 334
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 8.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 8.25e1
  variant carriers: 248
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 9.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 1.25e1
  variant carriers: 197
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 4.25e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 7.25e1
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 3.25e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.5e0
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.5e0
  variant carriers: 185
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 2.75e1
  variant carriers: 188
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 4.75e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 7.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 1.75e1
  variant carriers: 247
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 5.75e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 8.25e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.25e1
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 165
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 8.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 6.75e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 146
hgvs: p.Ser13211Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

19-9006392-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006392
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006392
    reference: chr 19
allele count: 4
allele frequency: 3.312629399585921e-5
allele num: 120750
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39626G>A
  hgvsp: ENSP00000381008.2:p.Ser13209Asn
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.145G>A
  hgvsp: ENSP00000472781.1:p.Ser49Asn
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.145G>A
  hgvsp: ENSP00000470885.1:p.Ser49Asn
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14518
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46149
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser13209Asn
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

19-9006404-GGCTTGAGCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006404
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006395
    reference: chr 19
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice acceptor
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 7.25e1
  variant carriers: 0
hgvs: c.39607-2_39613delAGCTCAAGC
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: GGCTTGAGCT
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum

19-9006407-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006407
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006407
    reference: chr 19
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.130A>G
  hgvsp: ENSP00000470885.1:p.Lys44Arg
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.130A>G
  hgvsp: ENSP00000472781.1:p.Lys44Arg
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39611A>G
  hgvsp: ENSP00000381008.2:p.Lys13204Arg
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46147
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys13204Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS

19-9006410-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006410
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006410
    reference: chr 19
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39608T>C
  hgvsp: ENSP00000381008.2:p.Leu13203Pro
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.127T>C
  hgvsp: ENSP00000470885.1:p.Leu43Pro
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.127T>C
  hgvsp: ENSP00000472781.1:p.Leu43Pro
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46145
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu13203Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-9006412-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006412
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006412
    reference: chr 19
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-1G>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-1G>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-1G>A
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14515
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46146
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: c.39607-1G>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

19-9006414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006414
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006414
    reference: chr 19
allele count: 2
allele frequency: 1.656561640658649e-5
allele num: 120732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-3C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-3C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-3C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46143
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.39607-3C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

19-9006415-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006415
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006415
    reference: chr 19
allele count: 6386
allele frequency: 5.923383730637232e-2
allele num: 107810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-4A>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-4A>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-4A>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 8.25e1
  variant carriers: 570
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 4.75e1
  variant carriers: 355
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 5.25e1
  variant carriers: 546
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 6.75e1
  variant carriers: 708
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 8.75e1
  variant carriers: 476
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 6.25e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13650
  bin: 9.75e1
  variant carriers: 1555
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 5.75e1
  variant carriers: 631
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 7.75e1
  variant carriers: 621
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 9.25e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 7.25e1
  variant carriers: 718
genotype quality: GenotypeQuality
  all individuals: 26963
  bin: 9.75e1
  variant carriers: 2436
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 1.75e1
  variant carriers: 343
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 8.25e1
  variant carriers: 212
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 2.5e0
  variant carriers: 276
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 8.75e1
  variant carriers: 182
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 403
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 6.75e1
  variant carriers: 237
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 7.25e1
  variant carriers: 194
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 1.25e1
  variant carriers: 361
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 6.25e1
  variant carriers: 248
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 4.75e1
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 336
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.25e1
  variant carriers: 382
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 2.75e1
  variant carriers: 351
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 335
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 9.25e1
  variant carriers: 155
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 5.25e1
  variant carriers: 317
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 7.75e1
  variant carriers: 183
hgvs: c.39607-4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-9006416-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006416
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006416
    reference: chr 19
allele count: 20991
allele frequency: 2.244594623494942e-1
allele num: 93518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-5A>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-5A>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-5A>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 7.75e1
  variant carriers: 1968
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 6.25e1
  variant carriers: 1773
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.75e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 9.25e1
  variant carriers: 1362
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 6.75e1
  variant carriers: 1949
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 7.25e1
  variant carriers: 2029
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 735
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.75e1
  variant carriers: 1560
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 8.75e1
  variant carriers: 1606
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 5.25e1
  variant carriers: 1177
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 8.25e1
  variant carriers: 1838
genotype depth: GenotypeDepth
  all individuals: 13691
  bin: 9.75e1
  variant carriers: 6116
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 1.25e1
  variant carriers: 562
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 4.75e1
  variant carriers: 508
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 3.25e1
  variant carriers: 518
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 6.75e1
  variant carriers: 512
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 6.25e1
  variant carriers: 456
genotype quality: GenotypeQuality
  all individuals: 8661
  bin: 2.5e0
  variant carriers: 424
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.5e0
  variant carriers: 611
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 3.75e1
  variant carriers: 541
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 5.25e1
  variant carriers: 542
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 2.25e1
  variant carriers: 575
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 515
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 5.75e1
  variant carriers: 526
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 9.25e1
  variant carriers: 391
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 468
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 8.25e1
  variant carriers: 469
genotype quality: GenotypeQuality
  all individuals: 21056
  bin: 9.75e1
  variant carriers: 13514
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 1.75e1
  variant carriers: 536
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 2.75e1
  variant carriers: 563
hgvs: c.39607-5A>T
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

19-9006418-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006418
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006418
    reference: chr 19
allele count: 14822
allele frequency: 1.522453675171535e-1
allele num: 97356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-7C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-7C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-7C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 7.75e1
  variant carriers: 1355
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 4.75e1
  variant carriers: 805
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 8.75e1
  variant carriers: 1004
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.25e1
  variant carriers: 490
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 9.25e1
  variant carriers: 926
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.75e1
  variant carriers: 341
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 8.25e1
  variant carriers: 1257
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 6.75e1
  variant carriers: 1558
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 5.25e1
  variant carriers: 1066
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 6.25e1
  variant carriers: 1428
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 5.75e1
  variant carriers: 1276
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 9.75e1
  variant carriers: 3576
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 7.25e1
  variant carriers: 1498
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 8.75e1
  variant carriers: 350
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 4.25e1
  variant carriers: 472
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 7.25e1
  variant carriers: 368
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 3.25e1
  variant carriers: 530
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 481
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 5.75e1
  variant carriers: 422
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 8.25e1
  variant carriers: 376
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 2.25e1
  variant carriers: 573
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 1.25e1
  variant carriers: 505
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 6.75e1
  variant carriers: 446
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 1.75e1
  variant carriers: 490
genotype quality: GenotypeQuality
  all individuals: 6902
  bin: 2.5e0
  variant carriers: 456
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 4.75e1
  variant carriers: 460
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 7.75e1
  variant carriers: 389
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 5.25e1
  variant carriers: 449
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 6.25e1
  variant carriers: 420
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 9.25e1
  variant carriers: 342
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 2.75e1
  variant carriers: 513
hgvs: c.39607-7C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

19-9006421-AGGGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006421
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006416
    reference: chr 19
allele count: 7
allele frequency: 5.888290713324361e-5
allele num: 118880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-15_126-11delCTCCC
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-15_126-11delCTCCC
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-15_39607-11delCTCCC
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4487
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33131
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5331
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: AGGGAG
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-9006422-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006422
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006422
    reference: chr 19
allele count: 1105
allele frequency: 9.572403756193908e-3
allele num: 115436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-11C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-11C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-11C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 8.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 6104
  bin: 9.75e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 5.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 6.25e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 7.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 6.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 4.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 7.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 8.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 5.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 9.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 4.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 4649
  bin: 6.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 5563
  bin: 6.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 5.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 8.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.5e0
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 1.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 8.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 2.5e0
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 5.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 4.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.25e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 3088
  bin: 9.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 7.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 7.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
  variant carriers: 92
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

19-9006425-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006425
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006425
    reference: chr 19
allele count: 1109
allele frequency: 9.678658078930372e-3
allele num: 114582
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-14T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-14T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-14T>C
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 4.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 7.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 6.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 9.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 5864
  bin: 4.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 3.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 8.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 5.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 9.75e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 6.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 5.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 8.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 2.5e0
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 1.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.5e0
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 5405
  bin: 6.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 8.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 9.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 4.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 1.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 5.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 4454
  bin: 6.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 7.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 4.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 8.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 5.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 25316
  bin: 9.75e1
  variant carriers: 362
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 3.25e1
  variant carriers: 64
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-9006433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006433
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006433
    reference: chr 19
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-22C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-22C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-22C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4055
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29857
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-9006437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006437
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006437
    reference: chr 19
allele count: 2768
allele frequency: 2.810152284263959e-2
allele num: 98500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-26C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-26C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-26C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 5.25e1
  variant carriers: 480
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 7.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 2.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 8.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 7.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 9.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 9.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 5.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 3.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 4.75e1
  variant carriers: 465
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 3.75e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 6.25e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 6.75e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 8.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 4.25e1
  variant carriers: 357
genotype quality: GenotypeQuality
  all individuals: 7655
  bin: 2.5e0
  variant carriers: 209
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 2.25e1
  variant carriers: 176
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 8.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 4903
  bin: 6.25e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 2.75e1
  variant carriers: 181
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 5.25e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 201
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 1.75e1
  variant carriers: 197
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 1.25e1
  variant carriers: 227
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 7.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 4.25e1
  variant carriers: 153
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 4.75e1
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 2683
  bin: 8.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 15107
  bin: 9.75e1
  variant carriers: 914
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 3947
  bin: 6.75e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 138
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

19-9006441-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006441
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006441
    reference: chr 19
allele count: 7609
allele frequency: 1.015698000373762e-1
allele num: 74914
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-30G>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-30G>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-30G>C
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 5.25e1
  variant carriers: 990
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 6.25e1
  variant carriers: 821
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 4.75e1
  variant carriers: 927
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 7.25e1
  variant carriers: 543
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 3.25e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 3.75e1
  variant carriers: 553
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 4.25e1
  variant carriers: 802
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 8.25e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 7.75e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 6.75e1
  variant carriers: 703
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 9.75e1
  variant carriers: 684
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 8.75e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 5.75e1
  variant carriers: 956
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 3.25e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 1.25e1
  variant carriers: 308
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 6.25e1
  variant carriers: 238
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 1.75e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 5.75e1
  variant carriers: 209
genotype quality: GenotypeQuality
  all individuals: 18506
  bin: 2.5e0
  variant carriers: 270
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 6.75e1
  variant carriers: 199
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 7.5e0
  variant carriers: 291
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 2.25e1
  variant carriers: 286
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 2.75e1
  variant carriers: 288
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 4.25e1
  variant carriers: 265
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 3.75e1
  variant carriers: 248
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.25e1
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 8.25e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.75e1
  variant carriers: 155
genotype quality: GenotypeQuality
  all individuals: 11614
  bin: 9.75e1
  variant carriers: 4261
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 9.25e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 8.75e1
  variant carriers: 169
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 5.25e1
  variant carriers: 245
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-9006442-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006442
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006442
    reference: chr 19
allele count: 1307
allele frequency: 1.145868036681805e-2
allele num: 114062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-31T>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-31T>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-31T>A
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.25e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 2.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 3.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 5.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 3.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 9.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 7.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 6.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 4.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 4.25e1
  variant carriers: 197
genotype quality: GenotypeQuality
  all individuals: 24342
  bin: 9.75e1
  variant carriers: 402
genotype quality: GenotypeQuality
  all individuals: 3338
  bin: 8.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 9.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.75e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 2.5e0
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.5e0
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 1.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 7.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 7.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 4.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 8.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 6.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 5331
  bin: 6.25e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 4.25e1
  variant carriers: 73
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

19-9006444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006444
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006444
    reference: chr 19
allele count: 2722
allele frequency: 3.031112892808623e-2
allele num: 89802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-33C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-33C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-33C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 8.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 6.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 6.25e1
  variant carriers: 272
genotype depth: GenotypeDepth
  all individuals: 6777
  bin: 4.25e1
  variant carriers: 497
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 7.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 7.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 4.75e1
  variant carriers: 474
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 2.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 3.25e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 5.25e1
  variant carriers: 453
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 5.75e1
  variant carriers: 389
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 9.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 3.75e1
  variant carriers: 395
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 9.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 201
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 7.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 4066
  bin: 6.75e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 4.25e1
  variant carriers: 150
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 4.75e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 11537
  bin: 2.5e0
  variant carriers: 201
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 5.25e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 217
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 3.25e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 8.25e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 2.75e1
  variant carriers: 177
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 2.25e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 5161
  bin: 6.25e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 10539
  bin: 9.75e1
  variant carriers: 896
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 5.75e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 93
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

19-9006445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006445
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006445
    reference: chr 19
allele count: 3
allele frequency: 2.489378651088688e-5
allele num: 120512
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-34C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-34C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-34C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23308
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4757
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-9006445-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006445
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006445
    reference: chr 19
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-34C>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-34C>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-34C>A
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23308
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

19-9006446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006446
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006446
    reference: chr 19
allele count: 1
allele frequency: 8.316976612661764e-6
allele num: 120236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-35G>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-35G>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-35G>A
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7399
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23249
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS

19-9006448-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006448
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006447
    reference: chr 19
allele count: 439
allele frequency: 3.661689882392193e-3
allele num: 119890
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-38delT
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-38delT
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-38delT
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 9.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 5.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 5.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 22805
  bin: 9.75e1
  variant carriers: 201
genotype quality: GenotypeQuality
  all individuals: 4837
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 4746
  bin: 7.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 6142
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 5.25e1
  variant carriers: 16
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: GA
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

19-9006449-A-AGGTGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006449
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006454
    reference: chr 19
allele count: 173
allele frequency: 1.475102319236016e-3
allele num: 117280
alternate allele: AGGTGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-39_126-38insCCACC
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-39_39607-38insCCACC
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-39_126-38insCCACC
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 6071
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7153
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 4655
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 4329
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 4.75e1
  variant carriers: 14
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

19-9006450-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006450
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006450
    reference: chr 19
allele count: 128
allele frequency: 1.144614944378868e-3
allele num: 111828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-39T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-39T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-39T>C
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5269
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 2.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6312
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 3.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 2.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 19695
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4076
  bin: 7.75e1
  variant carriers: 6
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

19-9006451-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006451
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006451
    reference: chr 19
allele count: 39
allele frequency: 4.171658394660277e-4
allele num: 93488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-40C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-40C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-40C>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5897
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9762
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10695
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

19-9006451-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006451
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006450
    reference: chr 19
allele count: 2606
allele frequency: 2.78752353243197e-2
allele num: 93488
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-41delT
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-41delT
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-41delT
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 2.75e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.25e1
  variant carriers: 527
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 3.25e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 6.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 4.75e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 5897
  bin: 3.75e1
  variant carriers: 492
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 5.75e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 5.25e1
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 7.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 203
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 7.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 9.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 165
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 8.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 3.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 2.25e1
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 9762
  bin: 2.5e0
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 187
genotype quality: GenotypeQuality
  all individuals: 10695
  bin: 9.75e1
  variant carriers: 882
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 4370
  bin: 6.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 7.5e0
  variant carriers: 169
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 146
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 8.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 3.25e1
  variant carriers: 170
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 7.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 5.25e1
  variant carriers: 131
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 4.75e1
  variant carriers: 131
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: GA
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

19-9006451-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006451
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006449
    reference: chr 19
allele count: 460
allele frequency: 4.920417593701865e-3
allele num: 93488
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-42_39607-41delTT
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-42_126-41delTT
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-42_126-41delTT
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 5.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5897
  bin: 3.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 5.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 4.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 9.75e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 7.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 7.5e0
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 3.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 4.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 9762
  bin: 2.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 2.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 4370
  bin: 6.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 5333
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 10695
  bin: 9.75e1
  variant carriers: 209
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 5.25e1
  variant carriers: 20
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: GAA
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

19-9006452-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006452
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006452
    reference: chr 19
allele count: 73
allele frequency: 1.286797109113344e-3
allele num: 56730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-41T>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-41T>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-41T>A
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17398
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 9.75e1
  variant carriers: 18
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

19-9006453-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006453
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006453
    reference: chr 19
allele count: 68
allele frequency: 9.776576472956264e-4
allele num: 69554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-42T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-42T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-42T>C
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 19972
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3576
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7635
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-9006453-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006453
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006453
    reference: chr 19
allele count: 2572
allele frequency: 3.697846277712281e-2
allele num: 69554
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-42T>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-42T>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-42T>A
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 5.25e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 7.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 5.75e1
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 2.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 4.25e1
  variant carriers: 518
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 6.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.75e1
  variant carriers: 529
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 4.75e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.25e1
  variant carriers: 423
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 6.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 7.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 4.75e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 9.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 5.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 7635
  bin: 9.75e1
  variant carriers: 880
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 6.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.25e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 19972
  bin: 2.5e0
  variant carriers: 187
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 185
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 4.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 7.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 1.25e1
  variant carriers: 198
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 8.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 2.75e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 3.25e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 3576
  bin: 6.25e1
  variant carriers: 115
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

19-9006455-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006455
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006455
    reference: chr 19
allele count: 1
allele frequency: 9.145951087453585e-6
allele num: 109338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-44A>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-44A>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-44A>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18845
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-9006455-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006455
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006455
    reference: chr 19
allele count: 1
allele frequency: 9.145951087453585e-6
allele num: 109338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-44A>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-44A>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-44A>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5762
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18845
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS

19-9006456-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006456
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006456
    reference: chr 19
allele count: 437
allele frequency: 3.935447848561806e-3
allele num: 111042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-45T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-45T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-45T>C
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 4.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 4.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 3.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 9.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 5.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 3.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3880
  bin: 7.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 5718
  bin: 6.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 3.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 5.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 2.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 1.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 4.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 19246
  bin: 9.75e1
  variant carriers: 198
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.5e0
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 3462
  bin: 2.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 5063
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 9.25e1
  variant carriers: 9
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

19-9006457-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006457
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006457
    reference: chr 19
allele count: 1
allele frequency: 8.318637074501714e-6
allele num: 120212
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-46C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-46C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-46C>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5884
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4566
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23272
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

19-9006458-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006458
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006458
    reference: chr 19
allele count: 2467
allele frequency: 3.36589625344503e-2
allele num: 73294
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-47T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-47T>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-47T>C
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 7.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.75e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 4.25e1
  variant carriers: 482
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 5.25e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 3.75e1
  variant carriers: 535
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 6.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 6.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 4.75e1
  variant carriers: 367
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 3.25e1
  variant carriers: 453
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 5.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 7.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 7739
  bin: 9.75e1
  variant carriers: 859
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 3.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 7.25e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 8.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 7.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 3520
  bin: 6.25e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 1.25e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 9.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 5.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 8.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 4.25e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 163
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 2.75e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 7.5e0
  variant carriers: 157
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 6.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 19206
  bin: 2.5e0
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 4.75e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 5.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 3.25e1
  variant carriers: 158
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

19-9006461-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006461
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006461
    reference: chr 19
allele count: 292
allele frequency: 2.575001322774652e-3
allele num: 113398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.126-50G>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39607-50G>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.126-50G>C
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7241
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 9.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7049
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4511
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3944
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 23280
  bin: 9.75e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 3.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 3601
  bin: 7.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 8.75e1
  variant carriers: 9
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

19-9006593-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006593
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006593
    reference: chr 19
allele count: 1
allele frequency: 8.469982382436644e-6
allele num: 118064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+49C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+49C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+49C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16753
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40006
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-9006598-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006598
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006598
    reference: chr 19
allele count: 1
allele frequency: 8.481620328747603e-6
allele num: 117902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+44A>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+44A>C
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+44A>C
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16752
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40004
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

19-9006602-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006602
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006602
    reference: chr 19
allele count: 1
allele frequency: 8.518758305789349e-6
allele num: 117388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+40A>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+40A>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+40A>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40002
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-9006606-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006606
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006606
    reference: chr 19
allele count: 2
allele frequency: 1.698283035850755e-5
allele num: 117766
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+36C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+36C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+36C>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16750
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40001
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4254
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-9006615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006615
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006615
    reference: chr 19
allele count: 1
allele frequency: 8.394754957102802e-6
allele num: 119122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+27C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+27C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+27C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16749
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40010
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4697
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/19-9006616-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006616
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006616
    reference: chr 19
allele count: 1
allele frequency: 8.473283736379196e-6
allele num: 118018
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+26G>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+26G>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+26G>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16749
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4574
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

19-9006620-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006620
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006620
    reference: chr 19
allele count: 1
allele frequency: 8.379841453399702e-6
allele num: 119334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+22C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+22C>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+22C>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16749
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

19-9006628-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006628
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006628
    reference: chr 19
allele count: 2
allele frequency: 1.672772285508774e-5
allele num: 119562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+14C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+14C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+14C>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16748
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40021
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

19-9006632-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006632
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006632
    reference: chr 19
allele count: 1
allele frequency: 8.356452852893003e-6
allele num: 119668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+10C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+10C>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+10C>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16747
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

19-9006635-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006635
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006635
    reference: chr 19
allele count: 222
allele frequency: 1.853893175668905e-3
allele num: 119748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+7G>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+7G>A
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+7G>A
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16761
  bin: 9.75e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40019
  bin: 9.75e1
  variant carriers: 220
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 6.75e1
  variant carriers: 0
hgvs: c.39606+7G>A
num of homozygotes: 2
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

19-9006638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006638
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006638
    reference: chr 19
allele count: 342
allele frequency: 2.851045383307213e-3
allele num: 119956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+4A>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+4A>G
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+4A>G
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16603
  bin: 9.75e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 6.75e1
  variant carriers: 0
hgvs: c.39606+4A>G
num of homozygotes: 6
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-9006639-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006639
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006639
    reference: chr 19
allele count: 1
allele frequency: 8.349336227769892e-6
allele num: 119770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.125+3A>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.125+3A>T
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39606+3A>T
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16425
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39853
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 0
hgvs: c.39606+3A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

19-9006643-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006643
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006643
    reference: chr 19
allele count: 1
allele frequency: 8.321544478655239e-6
allele num: 120170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.124T>C
  hgvsp: ENSP00000470885.1:p.Leu42Pro
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39605T>C
  hgvsp: ENSP00000381008.2:p.Leu13202Pro
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.124T>C
  hgvsp: ENSP00000472781.1:p.Leu42Pro
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39860
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu13202Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/19-9006645-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006645
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006645
    reference: chr 19
allele count: 1
allele frequency: 8.317253310266817e-6
allele num: 120232
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39603T>G
  hgvsp: ENST00000397910.4:c.39603T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.122T>G
  hgvsp: ENST00000601404.1:c.122T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.122T>G
  hgvsp: ENST00000599436.1:c.122T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly13201Gly
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-9006648-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006648
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006648
    reference: chr 19
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.119G>C
  hgvsp: ENSP00000470885.1:p.Gln40His
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39600G>C
  hgvsp: ENSP00000381008.2:p.Gln13200His
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.119G>C
  hgvsp: ENSP00000472781.1:p.Gln40His
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6807
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39860
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln13200His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-9006653-GAACACTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006653
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006646
    reference: chr 19
allele count: 1
allele frequency: 8.299443937256203e-6
allele num: 120490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.107_113delGAGTGTT
  hgvsp: ENSP00000470885.1:p.Glu36AspfsTer24
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.107_113delGAGTGTT
  hgvsp: ENSP00000472781.1:p.Glu36AspfsTer24
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsp: ENSP00000381008.2:p.Glu13196AspfsTer24
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39865
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu13196AspfsTer24
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GAACACTC
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/19-9006657-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006657
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006657
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 120370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.110T>G
  hgvsp: ENSP00000470885.1:p.Ser37Arg
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39591T>G
  hgvsp: ENSP00000381008.2:p.Ser13197Arg
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.110T>G
  hgvsp: ENSP00000472781.1:p.Ser37Arg
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39857
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser13197Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-9006660-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006660
    reference: chr 19
allele count: 2
allele frequency: 1.658484808279156e-5
allele num: 120592
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.107G>C
  hgvsp: ENSP00000470885.1:p.Glu36Asp
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.107G>C
  hgvsp: ENSP00000472781.1:p.Glu36Asp
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39588G>C
  hgvsp: ENSP00000381008.2:p.Glu13196Asp
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39898
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 25
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genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2337
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu13196Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-9006663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006663
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006663
    reference: chr 19
allele count: 47
allele frequency: 3.896599180885109e-4
allele num: 120618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.104G>A
  hgvsp: ENST00000599436.1:c.104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.104G>A
  hgvsp: ENST00000601404.1:c.104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39585G>A
  hgvsp: ENST00000397910.4:c.39585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16422
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2396
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genotype quality: GenotypeQuality
  all individuals: 6926
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 111
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
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genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39905
  bin: 9.75e1
  variant carriers: 47
hgvs: p.Thr13195Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-9006664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006664
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006664
    reference: chr 19
allele count: 164
allele frequency: 1.359438982741756e-3
allele num: 120638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.103C>T
  hgvsp: ENSP00000470885.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39584C>T
  hgvsp: ENSP00000381008.2:p.Thr13195Met
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.103C>T
  hgvsp: ENSP00000472781.1:p.Thr35Met
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16396
  bin: 9.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr13195Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

19-9006667-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9006667
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9006667
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 120564
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000470885
  ensembl transcript: ENST00000601404
  gene symbol: MUC16
  hgvsc: ENST00000601404.1:c.100T>C
  hgvsp: ENSP00000470885.1:p.Ile34Thr
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000472781
  ensembl transcript: ENST00000599436
  gene symbol: MUC16
  hgvsc: ENST00000599436.1:c.100T>C
  hgvsp: ENSP00000472781.1:p.Ile34Thr
  variant of: http://identifiers.org/hgnc/15582
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181143
  ensembl protein: ENSP00000381008
  ensembl transcript: ENST00000397910
  gene symbol: MUC16
  hgvsc: ENST00000397910.4:c.39581T>C
  hgvsp: ENSP00000381008.2:p.Ile13194Thr
  variant of: http://identifiers.org/hgnc/15582
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4929
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39817
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile13194Thr
num of homozygotes: 0
population: African
reference allele: A

GenotypeQuality
all individuals: 1587
bin: 7.25e1
variant carriers: 46

East Asian
type: Population
allele count: 84
allele frequency: 2.358225715889949e-2
allele num: 3562
num of homozygotes: 0

South Asian
type: Population
allele count: 274
allele frequency: 4.509545753785385e-2
allele num: 6076
num of homozygotes: 0

African
type: Population
allele count: 98
allele frequency: 1.743772241992883e-2
allele num: 5620
num of homozygotes: 0

Latino
type: Population
allele count: 137
allele frequency: 3.161052145823719e-2
allele num: 4334
num of homozygotes: 0

Other
type: Population
allele count: 14
allele frequency: 3.167420814479638e-2
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 668
allele frequency: 2.023016353725015e-2
allele num: 33020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 69
allele frequency: 2.290836653386454e-2
allele num: 3012
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.721e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.21e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.278e0

MQRankSum
type: SiteQuality
SIO_000300: -2.906e0

FS
type: SiteQuality
SIO_000300: 2.158e0

DP
type: SiteQuality
SIO_000300: 3.497471e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.155e0

GenotypeQuality
all individuals: 7566
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.056935190793458e-5
allele num: 33020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.21e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.906e0

DP
type: SiteQuality
SIO_000300: 3.497471e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.155e0

QD
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 2.158e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -2.278e0

MQ
type: SiteQuality
SIO_000300: 5.721e1

GenotypeQuality
all individuals: 1115
bin: 5.75e1
variant carriers: 108

African
type: Population
allele count: 173
allele frequency: 2.860449735449735e-2
allele num: 6048
num of homozygotes: 0

East Asian
type: Population
allele count: 181
allele frequency: 4.458128078817734e-2
allele num: 4060
num of homozygotes: 0

Latino
type: Population
allele count: 305
allele frequency: 6.020529016975918e-2
allele num: 5066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1516
allele frequency: 4.062818245162673e-2
allele num: 37314
num of homozygotes: 0

Other
type: Population
allele count: 20
allele frequency: 3.92156862745098e-2
allele num: 510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 146
allele frequency: 4.101123595505618e-2
allele num: 3560
num of homozygotes: 0

South Asian
type: Population
allele count: 382
allele frequency: 5.369693561990441e-2
allele num: 7114
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.747e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.84e-2

FS
type: SiteQuality
SIO_000300: 4.298e0

DP
type: SiteQuality
SIO_000300: 3.576524e6

MQRankSum
type: SiteQuality
SIO_000300: -3.688e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.991e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.719e0

QD
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 968
bin: 8.75e1
variant carriers: 51

African
type: Population
allele count: 159
allele frequency: 2.628968253968254e-2
allele num: 6048
num of homozygotes: 0

South Asian
type: Population
allele count: 575
allele frequency: 8.08265392184425e-2
allele num: 7114
num of homozygotes: 0

Other
type: Population
allele count: 21
allele frequency: 4.117647058823529e-2
allele num: 510
num of homozygotes: 0

East Asian
type: Population
allele count: 128
allele frequency: 3.152709359605911e-2
allele num: 4060
num of homozygotes: 0

Latino
type: Population
allele count: 185
allele frequency: 3.651796288985393e-2
allele num: 5066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 120
allele frequency: 3.370786516853932e-2
allele num: 3560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 973
allele frequency: 2.60760036447446e-2
allele num: 37314
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.991e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.719e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 4.298e0

MQ
type: SiteQuality
SIO_000300: 5.747e1

MQRankSum
type: SiteQuality
SIO_000300: -3.688e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

DP
type: SiteQuality
SIO_000300: 3.576524e6

GenotypeQuality
all individuals: 2158
bin: 9.25e1
variant carriers: 76

Latino
type: Population
allele count: 299
allele frequency: 3.186274509803921e-2
allele num: 9384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 145
allele frequency: 2.476938845234028e-2
allele num: 5854
num of homozygotes: 0

East Asian
type: Population
allele count: 181
allele frequency: 2.488998899889989e-2
allele num: 7272
num of homozygotes: 0

South Asian
type: Population
allele count: 382
allele frequency: 2.837616995988709e-2
allele num: 13462
num of homozygotes: 0

Other
type: Population
allele count: 20
allele frequency: 2.469135802469136e-2
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 174
allele frequency: 2.012956964368348e-2
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1519
allele frequency: 2.595871214710507e-2
allele num: 58516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e0

VQSLOD
type: SiteQuality
SIO_000300: -1.145e-1

FS
type: SiteQuality
SIO_000300: 4.317e0

MQ
type: SiteQuality
SIO_000300: 5.771e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.69e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 3.716174e6

QD
type: SiteQuality
SIO_000300: 9.6e-1

GenotypeQuality
all individuals: 2284
bin: 8.75e1
variant carriers: 58

European (Non-Finnish)
type: Population
allele count: 972
allele frequency: 1.661084147925354e-2
allele num: 58516
num of homozygotes: 0

Latino
type: Population
allele count: 186
allele frequency: 1.982097186700767e-2
allele num: 9384
num of homozygotes: 0

South Asian
type: Population
allele count: 576
allele frequency: 4.278710444213341e-2
allele num: 13462
num of homozygotes: 0

African
type: Population
allele count: 158
allele frequency: 1.827857473391948e-2
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 21
allele frequency: 2.592592592592593e-2
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 119
allele frequency: 2.032798086778271e-2
allele num: 5854
num of homozygotes: 0

East Asian
type: Population
allele count: 130
allele frequency: 1.787678767876788e-2
allele num: 7272
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.771e1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

DP
type: SiteQuality
SIO_000300: 3.716174e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.69e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 9.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.145e-1

FS
type: SiteQuality
SIO_000300: 4.317e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

GenotypeQuality
all individuals: 5237
bin: 6.75e1
variant carriers: 52

East Asian
type: Population
allele count: 85
allele frequency: 1.100181206316334e-2
allele num: 7726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 668
allele frequency: 1.112702801745677e-2
allele num: 60034
num of homozygotes: 0

African
type: Population
allele count: 98
allele frequency: 1.091314031180401e-2
allele num: 8980
num of homozygotes: 0

Latino
type: Population
allele count: 136
allele frequency: 1.330984537091407e-2
allele num: 10218
num of homozygotes: 0

Other
type: Population
allele count: 14
allele frequency: 1.694915254237288e-2
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 68
allele frequency: 1.184668989547038e-2
allele num: 5740
num of homozygotes: 0

South Asian
type: Population
allele count: 274
allele frequency: 1.825692963752665e-2
allele num: 15008
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.390056e6

FS
type: SiteQuality
SIO_000300: 4.333e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.837e-1

MQ
type: SiteQuality
SIO_000300: 5.759e1

MQRankSum
type: SiteQuality
SIO_000300: -2.911e0

QD
type: SiteQuality
SIO_000300: 9.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 8966
bin: 9.75e1
variant carriers: 826

Latino
type: Population
allele count: 186
allele frequency: 3.223570190641248e-2
allele num: 5770
num of homozygotes: 0

Other
type: Population
allele count: 21
allele frequency: 3.684210526315789e-2
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 157
allele frequency: 2.411674347158218e-2
allele num: 6510
num of homozygotes: 0

South Asian
type: Population
allele count: 575
allele frequency: 6.988332523091881e-2
allele num: 8228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 119
allele frequency: 2.988448016072326e-2
allele num: 3982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 973
allele frequency: 2.331991180136133e-2
allele num: 41724
num of homozygotes: 0

East Asian
type: Population
allele count: 128
allele frequency: 2.778983933999132e-2
allele num: 4606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.929099e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.303e-1

QD
type: SiteQuality
SIO_000300: 8.9e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

MQRankSum
type: SiteQuality
SIO_000300: -4.041e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 8966
bin: 9.75e1
variant carriers: 1113

European (Finnish)
type: Population
allele count: 145
allele frequency: 3.641386238071321e-2
allele num: 3982
num of homozygotes: 0

Other
type: Population
allele count: 20
allele frequency: 3.508771929824561e-2
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 174
allele frequency: 2.672811059907834e-2
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1521
allele frequency: 3.645383951682485e-2
allele num: 41724
num of homozygotes: 0

Latino
type: Population
allele count: 303
allele frequency: 5.251299826689775e-2
allele num: 5770
num of homozygotes: 0

South Asian
type: Population
allele count: 381
allele frequency: 4.630529897909577e-2
allele num: 8228
num of homozygotes: 0

East Asian
type: Population
allele count: 181
allele frequency: 3.929656969170647e-2
allele num: 4606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 8.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.11e-2

DP
type: SiteQuality
SIO_000300: 3.929099e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

FS
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: -4.041e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.303e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

GenotypeQuality
all individuals: 2695
bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.310536044362292e-4
allele num: 4328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.285818780287099e-5
allele num: 43748
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.858736059479554e-4
allele num: 5380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.5001500150015e-4
allele num: 6666
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.1001100110011e-4
allele num: 9090
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.643e0

QD
type: SiteQuality
SIO_000300: 1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.976e0

FS
type: SiteQuality
SIO_000300: 4.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.38e-2

MQ
type: SiteQuality
SIO_000300: 5.841e1

MQRankSum
type: SiteQuality
SIO_000300: -1.641e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.615e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.85e-1

DP
type: SiteQuality
SIO_000300: 3.4569e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 50

Latino
type: Population
allele count: 113
allele frequency: 9.94718309859155e-3
allele num: 11360
num of homozygotes: 0

African
type: Population
allele count: 94
allele frequency: 9.759136212624584e-3
allele num: 9632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 61
allele frequency: 9.358698987419454e-3
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 2.008928571428572e-2
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 622
allele frequency: 9.442555258683507e-3
allele num: 65872
num of homozygotes: 0

South Asian
type: Population
allele count: 446
allele frequency: 2.755467688125541e-2
allele num: 16186
num of homozygotes: 0

East Asian
type: Population
allele count: 74
allele frequency: 8.776091081593928e-3
allele num: 8432
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.684e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

QD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.137e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 6.551e0

DP
type: SiteQuality
SIO_000300: 4.148863e6

MQRankSum
type: SiteQuality
SIO_000300: -2.914e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

GenotypeQuality
all individuals: 24577
bin: 9.75e1
variant carriers: 502

European (Non-Finnish)
type: Population
allele count: 618
allele frequency: 9.827619108199223e-3
allele num: 62884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 60
allele frequency: 9.65561635017702e-3
allele num: 6214
num of homozygotes: 0

African
type: Population
allele count: 93
allele frequency: 1.006929406669554e-2
allele num: 9236
num of homozygotes: 0

East Asian
type: Population
allele count: 71
allele frequency: 8.861707438841737e-3
allele num: 8012
num of homozygotes: 0

South Asian
type: Population
allele count: 446
allele frequency: 3.066978407371751e-2
allele num: 14542
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 2.18978102189781e-2
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 113
allele frequency: 1.076395503905506e-2
allele num: 10498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.191648e6

MQRankSum
type: SiteQuality
SIO_000300: -2.919e0

FS
type: SiteQuality
SIO_000300: 6.496e0

QD
type: SiteQuality
SIO_000300: 8.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.944e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

MQ
type: SiteQuality
SIO_000300: 5.681e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

GenotypeQuality
all individuals: 4034
bin: 6.75e1
variant carriers: 61

East Asian
type: Population
allele count: 74
allele frequency: 9.843043362596435e-3
allele num: 7518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 63
allele frequency: 1.048601864181092e-2
allele num: 6008
num of homozygotes: 0

African
type: Population
allele count: 95
allele frequency: 1.080036380172806e-2
allele num: 8796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 625
allele frequency: 1.043649600908393e-2
allele num: 59886
num of homozygotes: 0

Latino
type: Population
allele count: 113
allele frequency: 1.161595394736842e-2
allele num: 9728
num of homozygotes: 0

South Asian
type: Population
allele count: 445
allele frequency: 3.380431479793376e-2
allele num: 13164
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 2.255639097744361e-2
allele num: 798
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.477e-1

FS
type: SiteQuality
SIO_000300: 1.289e0

QD
type: SiteQuality
SIO_000300: 7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

DP
type: SiteQuality
SIO_000300: 4.276817e6

MQRankSum
type: SiteQuality
SIO_000300: -3.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.62e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.112e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

GenotypeQuality
all individuals: 3880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.027550711474417e-4
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732201628269531e-4
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 6.754120013208057e-4
allele num: 66626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.951e0

MQ
type: SiteQuality
SIO_000300: 5.406e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.432e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 4.345228e6

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -2.399e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e0

GenotypeQuality
all individuals: 2741
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.8e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.894e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

MQRankSum
type: SiteQuality
SIO_000300: -4.271e0

FS
type: SiteQuality
SIO_000300: 1.2589e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.286e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

QD
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 4.347467e6

GenotypeQuality
all individuals: 5185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.438e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 3.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.744e0

VQSLOD
type: SiteQuality
SIO_000300: -1.817e0

QD
type: SiteQuality
SIO_000300: 2.78e0

DP
type: SiteQuality
SIO_000300: 4.34766e6

FS
type: SiteQuality
SIO_000300: 4.196e0

GenotypeQuality
all individuals: 5185
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.78e0

MQ
type: SiteQuality
SIO_000300: 5.438e1

VQSLOD
type: SiteQuality
SIO_000300: -1.817e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.744e0

FS
type: SiteQuality
SIO_000300: 4.196e0

DP
type: SiteQuality
SIO_000300: 4.34766e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 2433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3031
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.165e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

MQ
type: SiteQuality
SIO_000300: 5.612e1

MQRankSum
type: SiteQuality
SIO_000300: 4.55e0

FS
type: SiteQuality
SIO_000300: 5.248e0

QD
type: SiteQuality
SIO_000300: 8.68e0

VQSLOD
type: SiteQuality
SIO_000300: -6.935e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.98e-1

DP
type: SiteQuality
SIO_000300: 4.350749e6

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 45

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 29

African
type: Population
allele count: 3832
allele frequency: 3.971807628524047e-1
allele num: 9648
num of homozygotes: 0

Other
type: Population
allele count: 407
allele frequency: 4.593679458239278e-1
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30038
allele frequency: 4.541166510446588e-1
allele num: 66146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3259
allele frequency: 4.945371775417299e-1
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 4025
allele frequency: 4.705400981996727e-1
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 5547
allele frequency: 4.831881533101045e-1
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 8022
allele frequency: 4.870673952641166e-1
allele num: 16470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.952e-1

FS
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 4.48e0

MQRankSum
type: SiteQuality
SIO_000300: -7.124e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.292e0

MQ
type: SiteQuality
SIO_000300: 5.411e1

DP
type: SiteQuality
SIO_000300: 7.307499e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e0

VQSLOD
type: SiteQuality
SIO_000300: 4.773e1

GenotypeQuality
all individuals: 661
bin: 5.25e1
variant carriers: 164

GenotypeQuality
all individuals: 38089
bin: 9.75e1
variant carriers: 2564

African
type: Population
allele count: 348
allele frequency: 3.695052028031429e-2
allele num: 9418
num of homozygotes: 0

South Asian
type: Population
allele count: 559
allele frequency: 3.49156777014366e-2
allele num: 16010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2584
allele frequency: 4.064810445178543e-2
allele num: 63570
num of homozygotes: 0

East Asian
type: Population
allele count: 396
allele frequency: 4.857703631010795e-2
allele num: 8152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 224
allele frequency: 3.563474387527839e-2
allele num: 6286
num of homozygotes: 0

Latino
type: Population
allele count: 722
allele frequency: 6.759033888784871e-2
allele num: 10682
num of homozygotes: 0

Other
type: Population
allele count: 35
allele frequency: 4.127358490566038e-2
allele num: 848
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.127e0

MQRankSum
type: SiteQuality
SIO_000300: -3.897e0

DP
type: SiteQuality
SIO_000300: 5.526628e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 5.371e1

GenotypeQuality
all individuals: 1914
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.721e0

VQSLOD
type: SiteQuality
SIO_000300: -1.628e0

FS
type: SiteQuality
SIO_000300: 1.168e0

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -1.78e0

MQ
type: SiteQuality
SIO_000300: 5.235e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-1

DP
type: SiteQuality
SIO_000300: 4.814553e6

GenotypeQuality
all individuals: 46147
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 4.376e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

DP
type: SiteQuality
SIO_000300: 4.813607e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

FS
type: SiteQuality
SIO_000300: 5.85e0

QD
type: SiteQuality
SIO_000300: 4.36e0

MQRankSum
type: SiteQuality
SIO_000300: -3.038e0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.76e0

MQRankSum
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

DP
type: SiteQuality
SIO_000300: 4.813286e6

MQ
type: SiteQuality
SIO_000300: 5.568e1

FS
type: SiteQuality
SIO_000300: 4.529e0

GenotypeQuality
all individuals: 2740
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.973e0

QD
type: SiteQuality
SIO_000300: 8.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.401e1

VQSLOD
type: SiteQuality
SIO_000300: -2.524e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e0

DP
type: SiteQuality
SIO_000300: 4.812885e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02124183006536e-4
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.987e0

DP
type: SiteQuality
SIO_000300: 4.812656e6

VQSLOD
type: SiteQuality
SIO_000300: -1.812e0

FS
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.215e0

MQ
type: SiteQuality
SIO_000300: 5.627e1

GenotypeQuality
all individuals: 2679
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.042066571370227e-4
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.835e1

DP
type: SiteQuality
SIO_000300: 4.812566e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.903e0

QD
type: SiteQuality
SIO_000300: 1.247e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.639e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 4.218e0

GenotypeQuality
all individuals: 1254
bin: 5.75e1
variant carriers: 263

GenotypeQuality
all individuals: 1225
bin: 4.25e1
variant carriers: 276

European (Non-Finnish)
type: Population
allele count: 3231
allele frequency: 5.37085674390771e-2
allele num: 60158
num of homozygotes: 0

Latino
type: Population
allele count: 693
allele frequency: 6.816840448554004e-2
allele num: 10166
num of homozygotes: 0

South Asian
type: Population
allele count: 1193
allele frequency: 8.160054719562243e-2
allele num: 14620
num of homozygotes: 0

East Asian
type: Population
allele count: 462
allele frequency: 6.218034993270525e-2
allele num: 7430
num of homozygotes: 0

African
type: Population
allele count: 486
allele frequency: 5.569562227824891e-2
allele num: 8726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 264
allele frequency: 4.453441295546558e-2
allele num: 5928
num of homozygotes: 0

Other
type: Population
allele count: 57
allele frequency: 7.289002557544758e-2
allele num: 782
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.06e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.267e0

FS
type: SiteQuality
SIO_000300: 1.3117e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.672e0

DP
type: SiteQuality
SIO_000300: 4.743315e6

QD
type: SiteQuality
SIO_000300: 8.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.698e1

GenotypeQuality
all individuals: 1467
bin: 8.75e1
variant carriers: 434

GenotypeQuality
all individuals: 1803
bin: 7.75e1
variant carriers: 459

East Asian
type: Population
allele count: 1705
allele frequency: 2.540983606557377e-1
allele num: 6710
num of homozygotes: 0

Other
type: Population
allele count: 160
allele frequency: 2.402402402402402e-1
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 1495
allele frequency: 1.933523021210554e-1
allele num: 7732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11130
allele frequency: 2.150142956494861e-1
allele num: 51764
num of homozygotes: 0

South Asian
type: Population
allele count: 3527
allele frequency: 2.789465359063588e-1
allele num: 12644
num of homozygotes: 0

Latino
type: Population
allele count: 2104
allele frequency: 2.358215646715983e-1
allele num: 8922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 870
allele frequency: 1.71259842519685e-1
allele num: 5080
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.778e-1

FS
type: SiteQuality
SIO_000300: 1.1381e1

VQSLOD
type: SiteQuality
SIO_000300: 7.0e0

QD
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 5.728e1

MQRankSum
type: SiteQuality
SIO_000300: -4.178e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

DP
type: SiteQuality
SIO_000300: 4.751589e6

GenotypeQuality
all individuals: 1774
bin: 7.5e0
variant carriers: 558

GenotypeQuality
all individuals: 18307
bin: 9.75e1
variant carriers: 8231

Latino
type: Population
allele count: 1435
allele frequency: 1.543674698795181e-1
allele num: 9296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7851
allele frequency: 1.453565874250167e-1
allele num: 54012
num of homozygotes: 0

East Asian
type: Population
allele count: 1227
allele frequency: 1.799647990613083e-1
allele num: 6818
num of homozygotes: 0

African
type: Population
allele count: 1090
allele frequency: 1.361478890831876e-1
allele num: 8006
num of homozygotes: 0

South Asian
type: Population
allele count: 2502
allele frequency: 1.911382734912147e-1
allele num: 13090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 590
allele frequency: 1.093402520385471e-1
allele num: 5396
num of homozygotes: 0

Other
type: Population
allele count: 127
allele frequency: 1.720867208672087e-1
allele num: 738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.931e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.708e0

MQ
type: SiteQuality
SIO_000300: 5.75e1

FS
type: SiteQuality
SIO_000300: 1.307e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

DP
type: SiteQuality
SIO_000300: 4.466006e6

QD
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.868925990530775e-4
allele num: 16052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173708920187793e-4
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.554840276934289e-5
allele num: 65864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.2707e1

MQ
type: SiteQuality
SIO_000300: 5.842e1

DP
type: SiteQuality
SIO_000300: 3.919496e6

MQRankSum
type: SiteQuality
SIO_000300: -1.732e0

QD
type: SiteQuality
SIO_000300: 1.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.506e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.483e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
all individuals: 25512
bin: 9.75e1
variant carriers: 363

African
type: Population
allele count: 80
allele frequency: 8.481764206955046e-3
allele num: 9432
num of homozygotes: 0

Latino
type: Population
allele count: 63
allele frequency: 5.730398399126796e-3
allele num: 10994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 30
allele frequency: 4.659832246039142e-3
allele num: 6438
num of homozygotes: 0

South Asian
type: Population
allele count: 235
allele frequency: 1.506024096385542e-2
allele num: 15604
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 7.042253521126761e-3
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 78
allele frequency: 9.622501850481125e-3
allele num: 8106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 613
allele frequency: 9.57662865177316e-3
allele num: 64010
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.715e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

FS
type: SiteQuality
SIO_000300: 1.5709e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.12e0

VQSLOD
type: SiteQuality
SIO_000300: -3.793e0

DP
type: SiteQuality
SIO_000300: 3.924318e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.34e-1

QD
type: SiteQuality
SIO_000300: 7.3e-1

GenotypeQuality
all individuals: 583
bin: 2.75e1
variant carriers: 68

European (Finnish)
type: Population
allele count: 31
allele frequency: 4.834684965689333e-3
allele num: 6412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 612
allele frequency: 9.640528023691756e-3
allele num: 63482
num of homozygotes: 0

South Asian
type: Population
allele count: 235
allele frequency: 1.508731381612738e-2
allele num: 15576
num of homozygotes: 0

Latino
type: Population
allele count: 67
allele frequency: 6.152433425160698e-3
allele num: 10890
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 7.092198581560284e-3
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 77
allele frequency: 9.608185675068629e-3
allele num: 8014
num of homozygotes: 0

African
type: Population
allele count: 81
allele frequency: 8.651997436445204e-3
allele num: 9362
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5478e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: -2.994e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.705e0

MQ
type: SiteQuality
SIO_000300: 5.719e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

DP
type: SiteQuality
SIO_000300: 3.880761e6

QD
type: SiteQuality
SIO_000300: 7.6e-1

GenotypeQuality
all individuals: 2995
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.497e0

FS
type: SiteQuality
SIO_000300: 2.417e0

MQ
type: SiteQuality
SIO_000300: 5.679e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.637e0

QD
type: SiteQuality
SIO_000300: 2.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.022e0

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

DP
type: SiteQuality
SIO_000300: 3.758587e6

GenotypeQuality
all individuals: 2162
bin: 9.25e1
variant carriers: 62

Latino
type: Population
allele count: 239
allele frequency: 2.656736327256558e-2
allele num: 8996
num of homozygotes: 0

Other
type: Population
allele count: 28
allele frequency: 3.773584905660377e-2
allele num: 742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 70
allele frequency: 1.275510204081633e-2
allele num: 5488
num of homozygotes: 0

African
type: Population
allele count: 181
allele frequency: 2.183880308880309e-2
allele num: 8288
num of homozygotes: 0

South Asian
type: Population
allele count: 683
allele frequency: 5.213740458015267e-2
allele num: 13100
num of homozygotes: 0

East Asian
type: Population
allele count: 230
allele frequency: 3.298909925415949e-2
allele num: 6972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1337
allele frequency: 2.434716101540591e-2
allele num: 54914
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

DP
type: SiteQuality
SIO_000300: 3.762277e6

MQRankSum
type: SiteQuality
SIO_000300: -3.298e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.003e0

VQSLOD
type: SiteQuality
SIO_000300: -2.838e0

MQ
type: SiteQuality
SIO_000300: 5.731e1

FS
type: SiteQuality
SIO_000300: 1.3067e1

QD
type: SiteQuality
SIO_000300: 9.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

GenotypeQuality
all individuals: 1419
bin: 4.75e1
variant carriers: 249

European (Non-Finnish)
type: Population
allele count: 4097
allele frequency: 9.710831950699218e-2
allele num: 42190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 272
allele frequency: 6.974358974358974e-2
allele num: 3900
num of homozygotes: 0

Latino
type: Population
allele count: 646
allele frequency: 9.667764142472314e-2
allele num: 6682
num of homozygotes: 0

East Asian
type: Population
allele count: 689
allele frequency: 1.300981873111783e-1
allele num: 5296
num of homozygotes: 0

African
type: Population
allele count: 514
allele frequency: 7.924761023743447e-2
allele num: 6486
num of homozygotes: 0

Other
type: Population
allele count: 62
allele frequency: 1.047297297297297e-1
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 1329
allele frequency: 1.360565110565111e-1
allele num: 9768
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.348e0

DP
type: SiteQuality
SIO_000300: 3.682304e6

QD
type: SiteQuality
SIO_000300: 2.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.693e-1

MQ
type: SiteQuality
SIO_000300: 5.754e1

FS
type: SiteQuality
SIO_000300: 1.7706e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

GenotypeQuality
all individuals: 1042
bin: 5.75e1
variant carriers: 54

Other
type: Population
allele count: 10
allele frequency: 1.176470588235294e-2
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 36
allele frequency: 5.607476635514018e-3
allele num: 6420
num of homozygotes: 0

South Asian
type: Population
allele count: 260
allele frequency: 1.701347991100641e-2
allele num: 15282
num of homozygotes: 0

East Asian
type: Population
allele count: 96
allele frequency: 1.190181006694768e-2
allele num: 8066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 717
allele frequency: 1.134027140733243e-2
allele num: 63226
num of homozygotes: 0

Latino
type: Population
allele count: 95
allele frequency: 8.725202057310802e-3
allele num: 10888
num of homozygotes: 0

African
type: Population
allele count: 93
allele frequency: 9.967845659163987e-3
allele num: 9330
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.751e1

DP
type: SiteQuality
SIO_000300: 3.579743e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.806e0

QD
type: SiteQuality
SIO_000300: 9.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.966e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.122e0

FS
type: SiteQuality
SIO_000300: 1.0924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.427e0

GenotypeQuality
all individuals: 3281
bin: 7.25e1
variant carriers: 97

European (Finnish)
type: Population
allele count: 70
allele frequency: 1.41643059490085e-2
allele num: 4942
num of homozygotes: 0

South Asian
type: Population
allele count: 669
allele frequency: 5.715017939518196e-2
allele num: 11706
num of homozygotes: 0

Latino
type: Population
allele count: 241
allele frequency: 2.996766973389704e-2
allele num: 8042
num of homozygotes: 0

African
type: Population
allele count: 173
allele frequency: 2.238033635187581e-2
allele num: 7730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1311
allele frequency: 2.601396936264783e-2
allele num: 50396
num of homozygotes: 0

East Asian
type: Population
allele count: 230
allele frequency: 3.650793650793651e-2
allele num: 6300
num of homozygotes: 0

Other
type: Population
allele count: 28
allele frequency: 4.081632653061224e-2
allele num: 686
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5481e1

MQ
type: SiteQuality
SIO_000300: 5.755e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.781e0

QD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.38e-1

DP
type: SiteQuality
SIO_000300: 3.537027e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.15e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.202e0

GenotypeQuality
all individuals: 6255
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.503152206544582e-5
allele num: 66620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.276e0

FS
type: SiteQuality
SIO_000300: 3.738e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

DP
type: SiteQuality
SIO_000300: 3.376863e6

QD
type: SiteQuality
SIO_000300: 1.111e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.111e1

DP
type: SiteQuality
SIO_000300: 3.376863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

FS
type: SiteQuality
SIO_000300: 3.738e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.276e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeQuality
all individuals: 270
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022494887525562e-4
allele num: 9780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.149e-1

QD
type: SiteQuality
SIO_000300: 1.166e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQ
type: SiteQuality
SIO_000300: 5.614e1

MQRankSum
type: SiteQuality
SIO_000300: -1.668e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

DP
type: SiteQuality
SIO_000300: 3.374513e6

FS
type: SiteQuality
SIO_000300: 2.026e0

GenotypeQuality
all individuals: 7152
bin: 6.25e1
variant carriers: 20

Latino
type: Population
allele count: 25
allele frequency: 2.176941832114246e-3
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 2.817562808170932e-3
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 68
allele frequency: 4.164115125535823e-3
allele num: 16330
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.36322869955157e-3
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 37
allele frequency: 3.787103377686796e-3
allele num: 9770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 274
allele frequency: 4.13210677122606e-3
allele num: 66310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.214697843911327e-3
allele num: 6586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.236e0

MQ
type: SiteQuality
SIO_000300: 5.688e1

DP
type: SiteQuality
SIO_000300: 3.372221e6

VQSLOD
type: SiteQuality
SIO_000300: -2.562e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.043e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

FS
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

GenotypeQuality
all individuals: 22101
bin: 9.75e1
variant carriers: 57

European (Non-Finnish)
type: Population
allele count: 82
allele frequency: 1.265705553669003e-3
allele num: 64786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.701786814540973e-4
allele num: 6492
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.061571125265393e-3
allele num: 11304
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
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South Asian
type: Population
allele count: 42
allele frequency: 2.640845070422535e-3
allele num: 15904
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 2.156205079060853e-3
allele num: 8348
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African
type: Population
allele count: 13
allele frequency: 1.358411703239289e-3
allele num: 9570
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.447e0

DP
type: SiteQuality
SIO_000300: 3.288028e6

QD
type: SiteQuality
SIO_000300: 5.8e-1

FS
type: SiteQuality
SIO_000300: 6.384e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: -2.742e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.583e0

MQ
type: SiteQuality
SIO_000300: 5.775e1

GenotypeQuality
all individuals: 1033
bin: 5.25e1
variant carriers: 5

Other
type: Population
allele count: 1
allele frequency: 1.21654501216545e-3
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.57548675390999e-4
allele num: 6266
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.822788001008318e-4
allele num: 7934
num of homozygotes: 0

Latino
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allele count: 11
allele frequency: 1.026310878895316e-3
allele num: 10718
num of homozygotes: 0

African
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allele count: 9
allele frequency: 9.836065573770492e-4
allele num: 9150
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 1.935656120678147e-3
allele num: 14982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 1.049131641810317e-3
allele num: 61956
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

DP
type: SiteQuality
SIO_000300: 3.372724e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.434e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: -2.297e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

QD
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

GenotypeQuality
all individuals: 1826
bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 2
allele frequency: 3.862495171881035e-4
allele num: 5178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 6.421879721970384e-4
allele num: 52944
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.210067763794773e-4
allele num: 8264
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.231830500123183e-4
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num of homozygotes: 0

Other
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allele frequency: 1.440922190201729e-3
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 5.763e1

FS
type: SiteQuality
SIO_000300: 1.7877e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

QD
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.162e0

DP
type: SiteQuality
SIO_000300: 3.378903e6

VQSLOD
type: SiteQuality
SIO_000300: -9.51e-1

GenotypeQuality
all individuals: 5333
bin: 6.25e1
variant carriers: 117

European (Non-Finnish)
type: Population
allele count: 1251
allele frequency: 2.362873980054397e-2
allele num: 52944
num of homozygotes: 0

Other
type: Population
allele count: 27
allele frequency: 3.890489913544669e-2
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num of homozygotes: 0

African
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allele count: 172
allele frequency: 2.118748460211875e-2
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num of homozygotes: 0

South Asian
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allele count: 637
allele frequency: 5.384615384615385e-2
allele num: 11830
num of homozygotes: 0

East Asian
type: Population
allele count: 224
allele frequency: 3.46749226006192e-2
allele num: 6460
num of homozygotes: 0

Latino
type: Population
allele count: 226
allele frequency: 2.734753146176186e-2
allele num: 8264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 69
allele frequency: 1.332560834298957e-2
allele num: 5178
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.72e-1

MQ
type: SiteQuality
SIO_000300: 5.763e1

DP
type: SiteQuality
SIO_000300: 3.378903e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.51e-1

FS
type: SiteQuality
SIO_000300: 1.7877e1

QD
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: -3.162e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 23

European (Finnish)
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allele count: 10
allele frequency: 1.931247585940518e-3
allele num: 5178
num of homozygotes: 0

South Asian
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allele count: 65
allele frequency: 5.494505494505495e-3
allele num: 11830
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 3.146176185866409e-3
allele num: 8264
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.881844380403458e-3
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num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 4.927322000492732e-3
allele num: 8118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 294
allele frequency: 5.553037171350862e-3
allele num: 52944
num of homozygotes: 0

East Asian
type: Population
allele count: 23
allele frequency: 3.560371517027864e-3
allele num: 6460
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.378903e6

FS
type: SiteQuality
SIO_000300: 1.7877e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.72e-1

QD
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

MQRankSum
type: SiteQuality
SIO_000300: -3.162e0

GenotypeQuality
all individuals: 884
bin: 9.25e1
variant carriers: 2

East Asian
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allele frequency: 1.35795763172189e-3
allele num: 3682
num of homozygotes: 0

African
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allele frequency: 7.369196757553427e-4
allele num: 5428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.459427904261529e-3
allele num: 3426
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.878914405010438e-3
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num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 2.106286454957874e-3
allele num: 6172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 1.097494055240534e-3
allele num: 32802
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.325581395348837e-3
allele num: 430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.754e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.99e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.278e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e0

QD
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.825e1

DP
type: SiteQuality
SIO_000300: 2.806038e6

VQSLOD
type: SiteQuality
SIO_000300: -2.493e0

GenotypeQuality
all individuals: 2795
bin: 6.75e1
variant carriers: 3

Other
type: Population
allele count: 1
allele frequency: 1.865671641791045e-3
allele num: 536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.317175974710221e-3
allele num: 3796
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 1.591270743350761e-3
allele num: 8798
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 7.790588968526021e-4
allele num: 6418
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 7.939028262940616e-4
allele num: 6298
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 8.247422680412372e-4
allele num: 4850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 8.749806989551701e-4
allele num: 38858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.09e-1

FS
type: SiteQuality
SIO_000300: 1.5381e1

MQRankSum
type: SiteQuality
SIO_000300: -2.887e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.656e0

DP
type: SiteQuality
SIO_000300: 3.289428e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-1

MQ
type: SiteQuality
SIO_000300: 5.777e1

QD
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 1328
bin: 8.75e1
variant carriers: 86

African
type: Population
allele count: 172
allele frequency: 2.679962605172951e-2
allele num: 6418
num of homozygotes: 0

Other
type: Population
allele count: 28
allele frequency: 5.223880597014925e-2
allele num: 536
num of homozygotes: 0

East Asian
type: Population
allele count: 222
allele frequency: 4.577319587628866e-2
allele num: 4850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1228
allele frequency: 3.160224406814555e-2
allele num: 38858
num of homozygotes: 0

Latino
type: Population
allele count: 223
allele frequency: 3.540806605271515e-2
allele num: 6298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 65
allele frequency: 1.712328767123288e-2
allele num: 3796
num of homozygotes: 0

South Asian
type: Population
allele count: 634
allele frequency: 7.206183223459878e-2
allele num: 8798
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.73e-1

DP
type: SiteQuality
SIO_000300: 3.289428e6

MQRankSum
type: SiteQuality
SIO_000300: -2.887e0

VQSLOD
type: SiteQuality
SIO_000300: -3.656e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.09e-1

FS
type: SiteQuality
SIO_000300: 1.5381e1

GenotypeQuality
all individuals: 5762
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.660522732556209e-5
allele num: 60222
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 1.393e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.625e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

FS
type: SiteQuality
SIO_000300: 8.817e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

DP
type: SiteQuality
SIO_000300: 3.281042e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeQuality
all individuals: 1011
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.120071684587814e-4
allele num: 8928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14780
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.625e0

QD
type: SiteQuality
SIO_000300: 1.393e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

DP
type: SiteQuality
SIO_000300: 3.281042e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

FS
type: SiteQuality
SIO_000300: 8.817e0

GenotypeQuality
all individuals: 466
bin: 1.25e1
variant carriers: 26

African
type: Population
allele count: 37
allele frequency: 4.07040704070407e-3
allele num: 9090
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.694581280788177e-3
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.298701298701299e-3
allele num: 6160
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.229654403567447e-3
allele num: 10764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 272
allele frequency: 4.443573155590407e-3
allele num: 61212
num of homozygotes: 0

East Asian
type: Population
allele count: 25
allele frequency: 3.150995714645828e-3
allele num: 7934
num of homozygotes: 0

South Asian
type: Population
allele count: 68
allele frequency: 4.512276045122761e-3
allele num: 15070
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e0

FS
type: SiteQuality
SIO_000300: 1.3308e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

QD
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

DP
type: SiteQuality
SIO_000300: 3.277074e6

MQ
type: SiteQuality
SIO_000300: 5.731e1

VQSLOD
type: SiteQuality
SIO_000300: -4.908e0

MQRankSum
type: SiteQuality
SIO_000300: -2.872e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
all individuals: 480
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

QD
type: SiteQuality
SIO_000300: 3.219e1

MQRankSum
type: SiteQuality
SIO_000300: -1.666e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.141e0

FS
type: SiteQuality
SIO_000300: 1.094e0

MQ
type: SiteQuality
SIO_000300: 5.817e1

DP
type: SiteQuality
SIO_000300: 3.272729e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.952e0

GenotypeQuality
all individuals: 1756
bin: 2.25e1
variant carriers: 154

South Asian
type: Population
allele count: 606
allele frequency: 6.571242680546518e-2
allele num: 9222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 62
allele frequency: 1.606217616580311e-2
allele num: 3860
num of homozygotes: 0

East Asian
type: Population
allele count: 205
allele frequency: 4.119774919614148e-2
allele num: 4976
num of homozygotes: 0

Latino
type: Population
allele count: 212
allele frequency: 3.231707317073171e-2
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 25
allele frequency: 4.528985507246377e-2
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1192
allele frequency: 2.870352533230591e-2
allele num: 41528
num of homozygotes: 0

African
type: Population
allele count: 165
allele frequency: 2.501516070345664e-2
allele num: 6596
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MQRankSum
type: SiteQuality
SIO_000300: -2.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

QD
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 2.0512e1

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

DP
type: SiteQuality
SIO_000300: 3.290727e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.88e-1

GenotypeQuality
all individuals: 4876
bin: 6.25e1
variant carriers: 13

East Asian
type: Population
allele count: 15
allele frequency: 1.805923428846617e-3
allele num: 8306
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.151796888968353e-4
allele num: 11186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 197
allele frequency: 3.166693457643466e-3
allele num: 62210
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 2.63100197325148e-3
allele num: 9122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.11323155216285e-3
allele num: 6288
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.352941176470588e-3
allele num: 850
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South Asian
type: Population
allele count: 39
allele frequency: 2.526561285307074e-3
allele num: 15436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.379e0

FS
type: SiteQuality
SIO_000300: 1.796e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.99e-1

DP
type: SiteQuality
SIO_000300: 3.266102e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.792e1

QD
type: SiteQuality
SIO_000300: 2.23e0

VQSLOD
type: SiteQuality
SIO_000300: -4.153e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

GenotypeQuality
all individuals: 1205
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.586e0

DP
type: SiteQuality
SIO_000300: 4.473167e6

FS
type: SiteQuality
SIO_000300: 1.267e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.106e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

GenotypeQuality
all individuals: 4056
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.181e0

QD
type: SiteQuality
SIO_000300: 1.157e1

DP
type: SiteQuality
SIO_000300: 4.473947e6

MQRankSum
type: SiteQuality
SIO_000300: -1.008e0

FS
type: SiteQuality
SIO_000300: 2.935e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.023e0

GenotypeQuality
all individuals: 2181
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.076139258420605e-5
allele num: 14132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e0

QD
type: SiteQuality
SIO_000300: 1.177e1

FS
type: SiteQuality
SIO_000300: 2.998e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 4.476103e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032600454890068e-5
allele num: 65950
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.168e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

DP
type: SiteQuality
SIO_000300: 4.478503e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

GenotypeQuality
all individuals: 2266
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
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African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.851e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.63e-1

QD
type: SiteQuality
SIO_000300: 3.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.022e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

DP
type: SiteQuality
SIO_000300: 4.48401e6

GenotypeQuality
all individuals: 40002
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.989e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.419e0

FS
type: SiteQuality
SIO_000300: 4.805e0

DP
type: SiteQuality
SIO_000300: 4.485517e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.321e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66328
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15518
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.698e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.49007e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013409673045051e-5
allele num: 66370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15698
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

FS
type: SiteQuality
SIO_000300: 2.482e0

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 4.499523e6

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.425e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.25e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506114826194349e-5
allele num: 66396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 4.50335e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Latino
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allele count: 23
allele frequency: 1.98789974070873e-3
allele num: 11570
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

African
type: Population
allele count: 199
allele frequency: 2.029783761729906e-2
allele num: 9804
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.211e1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.215e0

FS
type: SiteQuality
SIO_000300: 5.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

DP
type: SiteQuality
SIO_000300: 4.514751e6

GenotypeQuality
all individuals: 40052
bin: 9.75e1
variant carriers: 337

GenotypeQuality
all individuals: 6343
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504483360414034e-5
allele num: 66468
num of homozygotes: 0

South Asian
type: Population
allele count: 339
allele frequency: 2.120870870870871e-2
allele num: 15984
num of homozygotes: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.492947e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.473e1

VQSLOD
type: SiteQuality
SIO_000300: 5.86e0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

GenotypeQuality
all individuals: 1279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6279
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505615947484116e-5
allele num: 66418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.172e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

DP
type: SiteQuality
SIO_000300: 4.458221e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 1.493e0

QD
type: SiteQuality
SIO_000300: 3.277e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 894
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MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

FS
type: SiteQuality
SIO_000300: 2.535e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.312e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.734e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.171e1

DP
type: SiteQuality
SIO_000300: 4.462169e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019783805833163e-4
allele num: 9806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

FS
type: SiteQuality
SIO_000300: 9.91e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e0

DP
type: SiteQuality
SIO_000300: 4.463307e6

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.634e0

DP
type: SiteQuality
SIO_000300: 4.465813e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.172e1

QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.46927e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.333e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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allele num: 8626
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

South Asian
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.474218e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.303712720632988e-4
allele num: 16430
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 3.059975520195839e-3
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.796429399489915e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.42e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 4.475441e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

QD
type: SiteQuality
SIO_000300: 1.317e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 39893
bin: 9.75e1
variant carriers: 164

GenotypeQuality
all individuals: 2342
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.551020408163265e-3
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.663138796492289e-3
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019783805833163e-4
allele num: 9806
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.081245439065921e-5
allele num: 16444
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.468555632342778e-3
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.333333333333334e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 109
allele frequency: 1.634820169781324e-3
allele num: 66674
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.299e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 4.472536e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0