21-38444405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444405
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444405
    reference: chr 21
allele count: 3
allele frequency: 2.607652591137458e-5
allele num: 115046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+329G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.4+40G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.4+40G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+329G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+329G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+329G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+329G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+329G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-38444408-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444408
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444408
    reference: chr 21
allele count: 1
allele frequency: 8.691722003963425e-6
allele num: 115052
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+326A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+326A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.4+37A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+326A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+326A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.4+37A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+326A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+326A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32673
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

21-38444409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444409
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444409
    reference: chr 21
allele count: 9
allele frequency: 7.822277847309137e-5
allele num: 115056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+325C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.4+36C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+325C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+325C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.4+36C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+325C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+325C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+325C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

21-38444424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444424
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444424
    reference: chr 21
allele count: 2
allele frequency: 1.737981855469429e-5
allele num: 115076
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+310C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.4+21C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+310C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+310C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+310C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.4+21C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+310C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+310C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD

21-38444426-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444426
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444426
    reference: chr 21
allele count: 2
allele frequency: 1.737951650185092e-5
allele num: 115078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+308C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+308C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.4+19C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+308C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.4+19C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+308C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+308C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+308C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

21-38444434-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444434
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444434
    reference: chr 21
allele count: 1
allele frequency: 8.68975825092546e-6
allele num: 115078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+300A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+300A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.4+11A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.4+11A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+300A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+300A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+300A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+300A>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

21-38444435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444435
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444435
    reference: chr 21
allele count: 1
allele frequency: 8.689305203155955e-6
allele num: 115084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+299C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+299C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.4+10C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.4+10C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+299C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+299C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+299C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+299C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/21-38444446-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444446
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444446
    reference: chr 21
allele count: 1
allele frequency: 8.690211345939933e-6
allele num: 115072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.3G>T
  hgvsp: ENSP00000388372.1:p.Met1?
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+288G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+288G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+288G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.3G>T
  hgvsp: ENSP00000382049.1:p.Met1?
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+288G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+288G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+288G>T
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

21-38444456-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444456
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444456
    reference: chr 21
allele count: 1
allele frequency: 8.689456213830139e-6
allele num: 115082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+278G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+278G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+278G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+278G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-8G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-8G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+278G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+278G>C
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32699
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-38444458-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444458
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444458
    reference: chr 21
allele count: 3
allele frequency: 2.606972783204143e-5
allele num: 115076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+276G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+276G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+276G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+276G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+276G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+276G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

21-38444469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444469
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444469
    reference: chr 21
allele count: 2
allele frequency: 1.737800639510635e-5
allele num: 115088
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+265G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+265G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+265G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+265G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+265G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+265G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

21-38444473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444473
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444473
    reference: chr 21
allele count: 1
allele frequency: 8.687946343243384e-6
allele num: 115102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+261G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+261G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-25G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+261G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+261G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+261G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-25G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+261G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3809
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4973
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

21-38444482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444482
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444482
    reference: chr 21
allele count: 1
allele frequency: 8.687795385043092e-6
allele num: 115104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+252C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+252C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+252C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-34C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+252C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+252C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-34C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+252C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32709
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

21-38444482-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444482
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444482
    reference: chr 21
allele count: 1
allele frequency: 8.687795385043092e-6
allele num: 115104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+252C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+252C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+252C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+252C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-34C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-34C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+252C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+252C>G
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

21-38444484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444484
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444484
    reference: chr 21
allele count: 3
allele frequency: 2.60615748140941e-5
allele num: 115112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-36G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+250G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+250G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+250G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+250G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+250G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-36G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+250G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

21-38444488-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444488
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444488
    reference: chr 21
allele count: 1
allele frequency: 8.686889745995344e-6
allele num: 115116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+246C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+246C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+246C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+246C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+246C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+246C>G
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4718
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

21-38444494-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444494
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444494
    reference: chr 21
allele count: 1
allele frequency: 8.686436997272459e-6
allele num: 115122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-46C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+240C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+240C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+240C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+240C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+240C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+240C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-46C>G
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32714
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

21-38444683-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444683
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444683
    reference: chr 21
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+51C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+51C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+51C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+51C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+51C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+51C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+51C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+51C>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37907
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum

21-38444684-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444684
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444684
    reference: chr 21
allele count: 3
allele frequency: 2.476637057094739e-5
allele num: 121132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+50A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+50A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+50A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+50A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+50A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+50A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+50A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+50A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37907
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53500
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/21-38444691-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444691
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444691
    reference: chr 21
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+43T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+43T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+43T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+43T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+43T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+43T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+43T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+43T>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37907
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

21-38444693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444693
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444693
    reference: chr 21
allele count: 3
allele frequency: 2.476514388548598e-5
allele num: 121138
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+41C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+41C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+41C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+41C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+41C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+41C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+41C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+41C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37907
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

21-38444707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444707
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444707
    reference: chr 21
allele count: 3
allele frequency: 2.474879968321537e-5
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+27G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+27G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+27G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+27G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+27G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+27G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+27G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+27G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37908
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

21-38444708-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444708
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444708
    reference: chr 21
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+26A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+26A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+26A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+26A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+26A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+26A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+26A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+26A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37908
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/21-38444719-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444719
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444719
    reference: chr 21
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+15G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+15G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+15G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+15G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+15G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+15G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+15G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+15G>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37908
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

21-38444719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444719
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444719
    reference: chr 21
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+15G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+15G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+15G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+15G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+15G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+15G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+15G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+15G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37908
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

21-38444721-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444721
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444721
    reference: chr 21
allele count: 5
allele frequency: 4.1209244057627e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+13C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+13C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+13C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+13C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+13C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+13C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+13C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+13C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37910
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

21-38444723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444723
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444723
    reference: chr 21
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+11T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+11T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+11T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+11T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+11T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+11T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+11T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+11T>C
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37910
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

21-38444731-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444731
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444731
    reference: chr 21
allele count: 9
allele frequency: 7.416563658838072e-5
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+3A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+3A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+3A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+3A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+3A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+3A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+3A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+3A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37914
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
hgvs: c.154+3A>G
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/21-38444732-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444732
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444731
    reference: chr 21
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+1delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+1delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+1delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+1delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+1delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+1delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+1delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+1delG
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37914
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
hgvs: c.154+1delG
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: AC
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

21-38444733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444733
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444733
    reference: chr 21
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163+1G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82+1G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82+1G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163+1G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82+1G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104+1G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154+1G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290+1G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37913
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: c.154+1G>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

21-38444734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444734
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444734
    reference: chr 21
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-163A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.104A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-163A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.154A>G
  hgvsp: ENSP00000420037.1:p.Ile52Val
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.82A>G
  hgvsp: ENSP00000382054.1:p.Ile28Val
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.82A>G
  hgvsp: ENSP00000353719.3:p.Ile28Val
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.82A>G
  hgvsp: ENSP00000382053.1:p.Ile28Val
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.290A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37915
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile52Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

21-38444735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444735
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444735
    reference: chr 21
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.153C>T
  hgvsp: ENST00000464265.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.103C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.289C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.81C>T
  hgvsp: ENST00000399103.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.81C>T
  hgvsp: ENST00000360525.4:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-164C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-164C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.81C>T
  hgvsp: ENST00000399102.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37916
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 6.75e1
  variant carriers: 0
hgvs: c.153C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

21-38444738-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444738
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444738
    reference: chr 21
allele count: 63
allele frequency: 5.191166776532631e-4
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.150C>A
  hgvsp: ENST00000464265.1:c.150C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.286C>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.100C>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.78C>A
  hgvsp: ENST00000399102.1:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-167C>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-167C>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.78C>A
  hgvsp: ENST00000360525.4:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.78C>A
  hgvsp: ENST00000399103.1:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37931
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly50Gly
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

21-38444738-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444738
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444737
    reference: chr 21
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.77delG
  hgvsp: ENSP00000382054.1:p.Gly26AlafsTer16
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.77delG
  hgvsp: ENSP00000353719.3:p.Gly26AlafsTer16
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-168delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.99delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.149delG
  hgvsp: ENSP00000420037.1:p.Gly50AlafsTer16
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.285delG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.77delG
  hgvsp: ENSP00000382053.1:p.Gly26AlafsTer16
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-168delG
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37931
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly50AlafsTer16
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: GC
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

21-38444744-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444744
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444744
    reference: chr 21
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.280A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-173A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.144A>G
  hgvsp: ENST00000464265.1:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.72A>G
  hgvsp: ENST00000360525.4:c.72A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-173A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.72A>G
  hgvsp: ENST00000399102.1:c.72A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.72A>G
  hgvsp: ENST00000399103.1:c.72A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.94A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37931
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53571
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln48Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

21-38444751-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444751
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444751
    reference: chr 21
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.273G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.87G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-180G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.65G>C
  hgvsp: ENSP00000353719.3:p.Ser22Thr
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.65G>C
  hgvsp: ENSP00000382054.1:p.Ser22Thr
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-180G>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.65G>C
  hgvsp: ENSP00000382053.1:p.Ser22Thr
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.137G>C
  hgvsp: ENSP00000420037.1:p.Ser46Thr
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37931
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser46Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

21-38444751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444751
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444751
    reference: chr 21
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-180G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-180G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.87G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.65G>A
  hgvsp: ENSP00000382053.1:p.Ser22Asn
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.65G>A
  hgvsp: ENSP00000353719.3:p.Ser22Asn
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.65G>A
  hgvsp: ENSP00000382054.1:p.Ser22Asn
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.273G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.137G>A
  hgvsp: ENSP00000420037.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37931
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53572
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser46Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

21-38444757-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444757
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444757
    reference: chr 21
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-186T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.131T>C
  hgvsp: ENSP00000420037.1:p.Phe44Ser
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.59T>C
  hgvsp: ENSP00000382054.1:p.Phe20Ser
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.59T>C
  hgvsp: ENSP00000382053.1:p.Phe20Ser
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-186T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.267T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.59T>C
  hgvsp: ENSP00000353719.3:p.Phe20Ser
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.81T>C
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37931
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53575
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe44Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

21-38444761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444761
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444761
    reference: chr 21
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.55C>T
  hgvsp: ENSP00000382053.1:p.Leu19Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.263C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.55C>T
  hgvsp: ENSP00000382054.1:p.Leu19Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-190C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.55C>T
  hgvsp: ENSP00000353719.3:p.Leu19Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-190C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.77C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.127C>T
  hgvsp: ENSP00000420037.1:p.Leu43Phe
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37935
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu43Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

21-38444764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444764
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444764
    reference: chr 21
allele count: 34
allele frequency: 2.800520567352519e-4
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-193G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.74G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.260G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.124G>A
  hgvsp: ENSP00000420037.1:p.Val42Ile
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.52G>A
  hgvsp: ENSP00000353719.3:p.Val18Ile
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.52G>A
  hgvsp: ENSP00000382053.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.52G>A
  hgvsp: ENSP00000382054.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-193G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37943
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53583
  bin: 9.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val42Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

21-38444765-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444765
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444765
    reference: chr 21
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.51T>C
  hgvsp: ENST00000360525.4:c.51T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-194T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.51T>C
  hgvsp: ENST00000399102.1:c.51T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-194T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.123T>C
  hgvsp: ENST00000464265.1:c.123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.51T>C
  hgvsp: ENST00000399103.1:c.51T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.259T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.73T>C
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37943
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53582
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe41Phe
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

21-38444767-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444767
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444767
    reference: chr 21
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.71T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.257T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.49T>C
  hgvsp: ENSP00000382054.1:p.Phe17Leu
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-196T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.49T>C
  hgvsp: ENSP00000353719.3:p.Phe17Leu
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.49T>C
  hgvsp: ENSP00000382053.1:p.Phe17Leu
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.121T>C
  hgvsp: ENSP00000420037.1:p.Phe41Leu
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-196T>C
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37943
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe41Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

21-38444768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444768
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444768
    reference: chr 21
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.48C>T
  hgvsp: ENST00000399103.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.256C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.48C>T
  hgvsp: ENST00000399102.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.48C>T
  hgvsp: ENST00000360525.4:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.120C>T
  hgvsp: ENST00000464265.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.70C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-197C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-197C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37944
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53582
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly40Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/21-38444771-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444771
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444771
    reference: chr 21
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-200T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.45T>G
  hgvsp: ENSP00000353719.3:p.Tyr15Ter
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.253T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.45T>G
  hgvsp: ENSP00000382054.1:p.Tyr15Ter
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-200T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.45T>G
  hgvsp: ENSP00000382053.1:p.Tyr15Ter
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.67T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.117T>G
  hgvsp: ENSP00000420037.1:p.Tyr39Ter
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr39Ter
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

21-38444772-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444772
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444772
    reference: chr 21
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.116A>T
  hgvsp: ENSP00000420037.1:p.Tyr39Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.44A>T
  hgvsp: ENSP00000382053.1:p.Tyr15Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-201A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.252A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.44A>T
  hgvsp: ENSP00000353719.3:p.Tyr15Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-201A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.44A>T
  hgvsp: ENSP00000382054.1:p.Tyr15Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.66A>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53583
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr39Phe
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

21-38444778-GCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444778
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444776
    reference: chr 21
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.244_245delAG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.36_37delAG
  hgvsp: ENSP00000353719.3:p.Arg12SerfsTer26
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.36_37delAG
  hgvsp: ENSP00000382054.1:p.Arg12SerfsTer26
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.36_37delAG
  hgvsp: ENSP00000382053.1:p.Arg12SerfsTer26
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.108_109delAG
  hgvsp: ENSP00000420037.1:p.Arg36SerfsTer26
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-209_-208delAG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.58_59delAG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-209_-208delAG
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53583
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg36SerfsTer26
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: GCT
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

21-38444779-CTCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444779
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444775
    reference: chr 21
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-212_-209delAAGA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.33_36delAAGA
  hgvsp: ENSP00000382054.1:p.Ala13PhefsTer8
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.105_108delAAGA
  hgvsp: ENSP00000420037.1:p.Ala37PhefsTer8
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.33_36delAAGA
  hgvsp: ENSP00000353719.3:p.Ala13PhefsTer8
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.55_58delAAGA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.33_36delAAGA
  hgvsp: ENSP00000382053.1:p.Ala13PhefsTer8
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-212_-209delAAGA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.241_244delAAGA
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala37PhefsTer8
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: CTCTT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/21-38444789-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444789
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444789
    reference: chr 21
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.49G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-218G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.27G>T
  hgvsp: ENSP00000382053.1:p.Leu9Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.27G>T
  hgvsp: ENSP00000353719.3:p.Leu9Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.235G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.27G>T
  hgvsp: ENSP00000382054.1:p.Leu9Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-218G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.99G>T
  hgvsp: ENSP00000420037.1:p.Leu33Phe
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37946
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu33Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

21-38444792-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444792
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444792
    reference: chr 21
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.24A>G
  hgvsp: ENST00000399103.1:c.24A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-221A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-221A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.24A>G
  hgvsp: ENST00000360525.4:c.24A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.24A>G
  hgvsp: ENST00000399102.1:c.24A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.96A>G
  hgvsp: ENST00000464265.1:c.96A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.46A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.232A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37946
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro32Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP

21-38444794-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444794
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444794
    reference: chr 21
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.22C>G
  hgvsp: ENSP00000353719.3:p.Pro8Ala
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.94C>G
  hgvsp: ENSP00000420037.1:p.Pro32Ala
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.230C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.22C>G
  hgvsp: ENSP00000382053.1:p.Pro8Ala
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-223C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.44C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.22C>G
  hgvsp: ENSP00000382054.1:p.Pro8Ala
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-223C>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37946
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro32Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

21-38444801-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444801
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444801
    reference: chr 21
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.15A>C
  hgvsp: ENST00000399103.1:c.15A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.87A>C
  hgvsp: ENST00000464265.1:c.87A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-230A>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.15A>C
  hgvsp: ENST00000360525.4:c.15A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.223A>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-230A>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.15A>C
  hgvsp: ENST00000399102.1:c.15A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.37A>C
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37946
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53583
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser29Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

21-38444802-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444802
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444802
    reference: chr 21
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.222C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.36C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.14C>G
  hgvsp: ENSP00000382053.1:p.Ser5Ter
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.86C>G
  hgvsp: ENSP00000420037.1:p.Ser29Ter
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.14C>G
  hgvsp: ENSP00000353719.3:p.Ser5Ter
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-231C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.14C>G
  hgvsp: ENSP00000382054.1:p.Ser5Ter
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-231C>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37948
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser29Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

21-38444805-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444805
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444805
    reference: chr 21
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.11A>C
  hgvsp: ENSP00000382053.1:p.Asn4Thr
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.219A>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.11A>C
  hgvsp: ENSP00000353719.3:p.Asn4Thr
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-234A>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.11A>C
  hgvsp: ENSP00000382054.1:p.Asn4Thr
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.83A>C
  hgvsp: ENSP00000420037.1:p.Asn28Thr
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.33A>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-234A>C
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn28Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

21-38444808-TCCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444808
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444805
    reference: chr 21
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.5_7delTGG
  hgvsp: ENSP00000382053.1:p.Val2del
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.5_7delTGG
  hgvsp: ENSP00000353719.3:p.Val2del
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.77_79delTGG
  hgvsp: ENSP00000420037.1:p.Val26del
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.213_215delTGG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.5_7delTGG
  hgvsp: ENSP00000382054.1:p.Val2del
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-240_-238delTGG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-240_-238delTGG
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.27_29delTGG
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37948
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val26del
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: TCCA
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

21-38444809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444809
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444809
    reference: chr 21
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.7G>A
  hgvsp: ENSP00000382054.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.215G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-238G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-238G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.7G>A
  hgvsp: ENSP00000353719.3:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.79G>A
  hgvsp: ENSP00000420037.1:p.Glu27Lys
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.7G>A
  hgvsp: ENSP00000382053.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.29G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37946
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53582
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu27Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/21-38444812-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444812
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444812
    reference: chr 21
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-241G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-241G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.212G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.4G>T
  hgvsp: ENSP00000353719.3:p.Val2Leu
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.76G>T
  hgvsp: ENSP00000420037.1:p.Val26Leu
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.26G>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.4G>T
  hgvsp: ENSP00000382053.1:p.Val2Leu
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.4G>T
  hgvsp: ENSP00000382054.1:p.Val2Leu
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37948
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val26Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

21-38444814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444814
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444814
    reference: chr 21
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.210T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.2T>C
  hgvsp: ENSP00000382053.1:p.Met1?
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.74T>C
  hgvsp: ENSP00000420037.1:p.Met25Thr
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.2T>C
  hgvsp: ENSP00000353719.3:p.Met1?
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-243T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.24T>C
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.2T>C
  hgvsp: ENSP00000382054.1:p.Met1?
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-243T>C
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37950
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

21-38444815-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444815
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444815
    reference: chr 21
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.1A>G
  hgvsp: ENSP00000353719.3:p.Met1?
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-244A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-244A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.73A>G
  hgvsp: ENSP00000420037.1:p.Met25Val
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.1A>G
  hgvsp: ENSP00000382054.1:p.Met1?
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.1A>G
  hgvsp: ENSP00000382053.1:p.Met1?
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.209A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.23A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37950
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

21-38444817-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444817
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444817
    reference: chr 21
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-2A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-2A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-2A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.71A>T
  hgvsp: ENSP00000420037.1:p.Lys24Ile
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-246A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.21A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-246A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.207A>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37951
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys24Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

21-38444822-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444822
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444822
    reference: chr 21
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-251A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-7A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-251A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.202A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.66A>T
  hgvsp: ENST00000464265.1:c.66A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-7A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-7A>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.16A>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37951
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro22Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

21-38444822-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444822
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444822
    reference: chr 21
allele count: 5
allele frequency: 4.11834475487612e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-7A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-251A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.16A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.66A>G
  hgvsp: ENST00000464265.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-251A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.202A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37951
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53583
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro22Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

21-38444823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444823
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444823
    reference: chr 21
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.15C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.65C>T
  hgvsp: ENSP00000420037.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-252C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.201C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-252C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-8C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37955
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro22Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

21-38444824-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444824
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444824
    reference: chr 21
allele count: 19
allele frequency: 1.564971006852926e-4
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-9C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.14C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-253C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-9C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-253C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.64C>G
  hgvsp: ENSP00000420037.1:p.Pro22Ala
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.200C>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-9C>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37960
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53586
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro22Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

21-38444827-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444827
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444828
    reference: chr 21
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-257dupA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-13dupA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.196dupA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-13dupA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-13dupA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.60dupA
  hgvsp: ENSP00000420037.1:p.Ala21SerfsTer42
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-257dupA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.10dupA
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37960
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 53586
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala21SerfsTer42
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

21-38444832-G-GACAATCTGTGGAAAAGGAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444832
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444852
    reference: chr 21
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: GACAATCTGTGGAAAAGGAAC
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsp: ENSP00000420037.1:p.Ser19CysfsTer34
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37959
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser19CysfsTer34
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

21-38444834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444834
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444834
    reference: chr 21
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-19G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-263G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-263G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-19G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.4G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.54G>A
  hgvsp: ENST00000464265.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-19G>A
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.190G>A
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37960
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53589
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu18Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/21-38444835-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444835
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444835
    reference: chr 21
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-20T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-264T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-20T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-264T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000329667
  gene symbol: PIGP
  hgvsc: ENST00000329667.3:n.3T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.189T>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.53T>G
  hgvsp: ENSP00000420037.1:p.Leu18Trp
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-20T>G
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37960
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu18Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-38444838-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444838
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444836
    reference: chr 21
allele count: 5
allele frequency: 4.11834475487612e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.48_49delCA
  hgvsp: ENSP00000420037.1:p.His16GlnfsTer4
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-22-3_-22-2delCA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.184_185delCA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-22-3_-22-2delCA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-22-3_-22-2delCA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-266-3_-266-2delCA
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-269_-268delCA
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37960
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.-22-3_-22-2delCA
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: CTG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

21-38444839-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444839
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444839
    reference: chr 21
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.49A>G
  hgvsp: ENSP00000420037.1:p.Arg17Gly
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-22-2A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-22-2A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-268A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-266-2A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-22-2A>G
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.185A>G
  variant of: http://identifiers.org/hgnc/3046
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37956
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: c.-22-2A>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

21-38444848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444848
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444848
    reference: chr 21
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-266-11C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.40C>T
  hgvsp: ENSP00000420037.1:p.Leu14Phe
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.176C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-277C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-22-11C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-22-11C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-22-11C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37960
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53589
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu14Phe
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS

21-38444849-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38444849
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38444849
    reference: chr 21
allele count: 5
allele frequency: 4.11834475487612e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000420037
  ensembl transcript: ENST00000464265
  gene symbol: PIGP
  hgvsc: ENST00000464265.1:c.39C>T
  hgvsp: ENST00000464265.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000353719
  ensembl transcript: ENST00000360525
  gene symbol: PIGP
  hgvsc: ENST00000360525.4:c.-22-12C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382054
  ensembl transcript: ENST00000399103
  gene symbol: PIGP
  hgvsc: ENST00000399103.1:c.-22-12C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185808
  ensembl transcript: ENST00000479152
  gene symbol: PIGP
  hgvsc: ENST00000479152.1:n.175C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382053
  ensembl transcript: ENST00000399102
  gene symbol: PIGP
  hgvsc: ENST00000399102.1:c.-22-12C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000382049
  ensembl transcript: ENST00000399098
  gene symbol: PIGP
  hgvsc: ENST00000399098.1:c.-266-12C>T
  variant of: http://identifiers.org/hgnc/3046
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185808
  ensembl protein: ENSP00000388372
  ensembl transcript: ENST00000430792
  gene symbol: PIGP
  hgvsc: ENST00000430792.1:c.-278C>T
  variant of: http://identifiers.org/hgnc/3046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37962
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe13Phe
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32668
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.180661577608142e-5
allele num: 62880
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

FS
type: SiteQuality
SIO_000300: 4.65e0

DP
type: SiteQuality
SIO_000300: 2.556467e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.847e0

QD
type: SiteQuality
SIO_000300: 1.131e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

GenotypeQuality
all individuals: 114
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3741
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590077913817777e-5
allele num: 62890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.145e0

DP
type: SiteQuality
SIO_000300: 2.558663e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.083e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.135e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.162e0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3750
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32679
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.537098560354374e-4
allele num: 16254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e-1

FS
type: SiteQuality
SIO_000300: 6.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 2.559295e6

QD
type: SiteQuality
SIO_000300: 1.39e1

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.042e0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3523
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.354603249352484e-4
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.947e0

MQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.564252e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.251e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32694
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.179852454846095e-5
allele num: 62896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

FS
type: SiteQuality
SIO_000300: 4.478e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.525e0

DP
type: SiteQuality
SIO_000300: 2.564691e6

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

GenotypeQuality
all individuals: 1067
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32697
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589976786338919e-5
allele num: 62894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.123e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 2.565969e6

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
type: SiteQuality
SIO_000300: 1.202e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.228e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5049
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 1096
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GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3594
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variant carriers: 0

GenotypeQuality
all individuals: 32697
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589926227423048e-5
allele num: 62896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.982e-1

FS
type: SiteQuality
SIO_000300: 1.009e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

QD
type: SiteQuality
SIO_000300: 8.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.165e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.894e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.566187e6

GenotypeQuality
all individuals: 5095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589976786338919e-5
allele num: 62894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.237e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 4.534e0

VQSLOD
type: SiteQuality
SIO_000300: -7.144e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 2.567615e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.497e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175640724194686e-4
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.019e1

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.631e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.007e0

DP
type: SiteQuality
SIO_000300: 2.568543e6

FS
type: SiteQuality
SIO_000300: 1.1426e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.180155827635554e-5
allele num: 62890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.730574471800244e-5
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e0

FS
type: SiteQuality
SIO_000300: 5.831e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

QD
type: SiteQuality
SIO_000300: 1.159e1

MQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.568619e6

GenotypeQuality
all individuals: 3609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32703
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3809
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.180155827635554e-5
allele num: 62890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.367e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

QD
type: SiteQuality
SIO_000300: 7.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

FS
type: SiteQuality
SIO_000300: 5.396e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 2.568843e6

MQ
type: SiteQuality
SIO_000300: 5.894e1

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3617
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589825119236884e-5
allele num: 62900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.098e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e0

QD
type: SiteQuality
SIO_000300: 1.198e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.957e0

VQSLOD
type: SiteQuality
SIO_000300: 2.44e-1

DP
type: SiteQuality
SIO_000300: 2.568937e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.854e0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589724023909449e-5
allele num: 62904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 3.74e-1

DP
type: SiteQuality
SIO_000300: 2.56932e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.123e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1254
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GenotypeQuality
all individuals: 4896
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.94e-1

DP
type: SiteQuality
SIO_000300: 2.56932e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: 3.74e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 1236
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3561
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.230012300123001e-4
allele num: 16260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589622941438291e-5
allele num: 62908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

DP
type: SiteQuality
SIO_000300: 2.569274e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 6.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 9.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.596e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2492
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3566
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589724023909449e-5
allele num: 62904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.278e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

DP
type: SiteQuality
SIO_000300: 2.569398e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

QD
type: SiteQuality
SIO_000300: 9.85e0

FS
type: SiteQuality
SIO_000300: 9.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3808
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

FS
type: SiteQuality
SIO_000300: 1.333e0

QD
type: SiteQuality
SIO_000300: 9.23e0

DP
type: SiteQuality
SIO_000300: 2.569878e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.913e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.755e0

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 6.416348e6

FS
type: SiteQuality
SIO_000300: 4.085e0

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 368
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 234
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
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GenotypeQuality
all individuals: 536
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GenotypeQuality
all individuals: 604
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.222493887530562e-4
allele num: 16360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 6.416502e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

FS
type: SiteQuality
SIO_000300: 1.3184e1

QD
type: SiteQuality
SIO_000300: 1.33e1

VQSLOD
type: SiteQuality
SIO_000300: -1.694e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
all individuals: 411
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 242
bin: 2.25e1
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 963
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GenotypeQuality
all individuals: 53499
bin: 9.75e1
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GenotypeQuality
all individuals: 424
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variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

DP
type: SiteQuality
SIO_000300: 6.419884e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.067e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

QD
type: SiteQuality
SIO_000300: 1.479e1

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66632
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European (Finnish)
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allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10398
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South Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

DP
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SIO_000300: 6.42167e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

FS
type: SiteQuality
SIO_000300: 1.404e0

ReadPosRankSum
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SIO_000300: 7.000000000000001e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.000570108320581e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.87e1

MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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SIO_000300: 6.34e-1

DP
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SIO_000300: 6.432367e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16422
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

African
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allele frequency: 9.613535858488752e-5
allele num: 10402
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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SIO_000300: -5.823e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999400119976005e-5
allele num: 66680
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
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SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.318e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999400119976005e-5
allele num: 66680
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.439439e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.498500299940011e-5
allele num: 66680
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.440281e6

BaseQRankSum
type: SiteQuality
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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MQ
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SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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MQRankSum
type: SiteQuality
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MQ
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DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

African
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.349608613502084e-4
allele num: 66686
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
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QD
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MQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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African
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South Asian
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Other
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Latino
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num of homozygotes: 0

DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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FS
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

MQ
type: SiteQuality
SIO_000300: 5.986e1

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.19e-1

FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.838e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: -1.195e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
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BaseQRankSum
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DP
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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SIO_000300: 1.42e0

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
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allele num: 908
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.621e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.649373238169496e-4
allele num: 66692
num of homozygotes: 0

South Asian
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allele count: 47
allele frequency: 2.847104434213715e-3
allele num: 16508
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Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

DP
type: SiteQuality
SIO_000300: 6.445037e6

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
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SIO_000300: 3.68e0

FS
type: SiteQuality
SIO_000300: 1.199e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

FS
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
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East Asian
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Other
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FS
type: SiteQuality
SIO_000300: 2.518e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
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Latino
type: Population
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Other
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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allele num: 66734
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Latino
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East Asian
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FS
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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SIO_000300: 1.562e1

GenotypeQuality
all individuals: 849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53574
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.274e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.143e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 5.528e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

QD
type: SiteQuality
SIO_000300: 2.19e1

DP
type: SiteQuality
SIO_000300: 6.446752e6

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.195762280097102e-4
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.22e0

DP
type: SiteQuality
SIO_000300: 6.449033e6

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 1249
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variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 6.449226e6

FS
type: SiteQuality
SIO_000300: 5.283e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

QD
type: SiteQuality
SIO_000300: 1.438e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.365e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 396
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

DP
type: SiteQuality
SIO_000300: 6.449632e6

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.478e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 318
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variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.268e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.097e0

DP
type: SiteQuality
SIO_000300: 6.449865e6

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

GenotypeQuality
all individuals: 53583
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 604
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.046e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

QD
type: SiteQuality
SIO_000300: 1.727e1

MQRankSum
type: SiteQuality
SIO_000300: 8.59e-1

DP
type: SiteQuality
SIO_000300: 6.450001e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.094e0

GenotypeQuality
all individuals: 603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

VQSLOD
type: SiteQuality
SIO_000300: -8.0e-4

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 6.450005e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.72e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 318
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variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

FS
type: SiteQuality
SIO_000300: 1.891e0

MQ
type: SiteQuality
SIO_000300: 6.022e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.45013e6

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.282e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 318
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.086e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.48e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 6.449956e6

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.688e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.891e1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
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SIO_000300: 6.45025e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.901e0

FS
type: SiteQuality
SIO_000300: 1.321e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
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VQSLOD
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SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

FS
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 6.450441e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.217e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 6.450573e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.62e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.536e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 6.450738e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.738e0

DP
type: SiteQuality
SIO_000300: 6.450934e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 908
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQRankSum
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SIO_000300: -1.06e0

DP
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.055e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.450832e6

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

BaseQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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DP
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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Other
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: 8.23e-1

ReadPosRankSum
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DP
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FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.896e1

VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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BaseQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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Other
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European (Finnish)
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InbreedingCoeff
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BaseQRankSum
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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African
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South Asian
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European (Finnish)
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Other
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ClippingRankSum
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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MQ
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DP
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MQRankSum
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BaseQRankSum
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FS
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QD
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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MQ
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ReadPosRankSum
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FS
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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Other
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South Asian
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
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East Asian
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allele num: 8654
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.34e-1

DP
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SIO_000300: 6.455651e6

FS
type: SiteQuality
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QD
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SIO_000300: 1.136e1

ClippingRankSum
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SIO_000300: 7.1e-1

BaseQRankSum
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SIO_000300: -3.809e0

MQ
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SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
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SIO_000300: -3.108e-1

InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

African
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allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.456015e6

QD
type: SiteQuality
SIO_000300: 1.387e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 5.777675063554426e-4
allele num: 8654
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European (Non-Finnish)
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Other
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
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SIO_000300: 6.456665e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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QD
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SIO_000300: 1.699e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
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Other
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.81e-1

ClippingRankSum
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MQ
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QD
type: SiteQuality
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InbreedingCoeff
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FS
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MQRankSum
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SIO_000300: 4.34e-1

BaseQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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South Asian
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East Asian
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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FS
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SIO_000300: 2.718e0