X-54948701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948701
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948701
    reference: chr 0
allele count: 3
allele frequency: 4.536038828492372e-5
allele num: 66137
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.22G>A
  hgvsp: ENSP00000406574.1:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-65G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-397G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.22G>A
  hgvsp: ENSP00000364181.2:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.22G>A
  hgvsp: ENSP00000173898.7:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.22G>A
  hgvsp: ENSP00000404645.1:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.115G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.193G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-310G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.22G>A
  hgvsp: ENSP00000318278.8:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.22G>A
  hgvsp: ENSP00000382641.1:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.22G>A
  hgvsp: ENSP00000364162.4:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-65G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-397G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.22G>A
  hgvsp: ENSP00000404767.1:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-88+181G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.22G>A
  hgvsp: ENSP00000407996.1:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.22G>A
  hgvsp: ENSP00000404794.1:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1390G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-397G>A
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly8Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

X-54948701-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948701
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948701
    reference: chr 0
allele count: 1
allele frequency: 1.512012942830791e-5
allele num: 66137
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.22G>T
  hgvsp: ENSP00000406574.1:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.115G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.22G>T
  hgvsp: ENSP00000407996.1:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.22G>T
  hgvsp: ENSP00000382641.1:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-397G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.22G>T
  hgvsp: ENSP00000364181.2:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.22G>T
  hgvsp: ENSP00000404767.1:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.22G>T
  hgvsp: ENSP00000404794.1:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1390G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-65G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.22G>T
  hgvsp: ENSP00000173898.7:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-65G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.193G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.22G>T
  hgvsp: ENSP00000364162.4:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-397G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.22G>T
  hgvsp: ENSP00000318278.8:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.22G>T
  hgvsp: ENSP00000404645.1:p.Gly8Ter
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-397G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-310G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-88+181G>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly8Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

X-54948710-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948710
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948710
    reference: chr 0
allele count: 1
allele frequency: 1.514646632940535e-5
allele num: 66022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.124G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1399G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.31G>A
  hgvsp: ENSP00000364181.2:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.31G>A
  hgvsp: ENSP00000404794.1:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.31G>A
  hgvsp: ENSP00000407996.1:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.202G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.31G>A
  hgvsp: ENSP00000406574.1:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-388G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.31G>A
  hgvsp: ENSP00000404767.1:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.31G>A
  hgvsp: ENSP00000318278.8:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-56G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-301G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-388G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.31G>A
  hgvsp: ENSP00000382641.1:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.31G>A
  hgvsp: ENSP00000173898.7:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-88+190G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-388G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-56G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.31G>A
  hgvsp: ENSP00000404645.1:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.31G>A
  hgvsp: ENSP00000364162.4:p.Val11Met
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val11Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-54948714-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948714
    reference: chr 0
allele count: 1
allele frequency: 1.517888313777872e-5
allele num: 65881
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.35C>T
  hgvsp: ENSP00000404794.1:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-52C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.35C>T
  hgvsp: ENSP00000407996.1:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.35C>T
  hgvsp: ENSP00000404767.1:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.35C>T
  hgvsp: ENSP00000364162.4:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.206C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.35C>T
  hgvsp: ENSP00000173898.7:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.35C>T
  hgvsp: ENSP00000406574.1:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.35C>T
  hgvsp: ENSP00000364181.2:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-384C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.35C>T
  hgvsp: ENSP00000318278.8:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-52C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-384C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.128C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-384C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.35C>T
  hgvsp: ENSP00000382641.1:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.35C>T
  hgvsp: ENSP00000404645.1:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-297C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1403C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-88+194C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro12Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-54948726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948726
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948726
    reference: chr 0
allele count: 2
allele frequency: 3.067766972420775e-5
allele num: 65194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.138+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-88+206T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-42+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-285T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-372T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-42+2T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-372T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1415T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-372T>C
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.45+2T>C
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-54948732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948732
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948732
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 64665
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-88+212C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-366C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-42+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1421C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-366C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-42+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.138+8C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-279C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.45+8C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

X-54948747-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948747
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948747
    reference: chr 0
allele count: 5
allele frequency: 7.907888909976593e-5
allele num: 63228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-42+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-351C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-264C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-351C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1436C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-351C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-42+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-88+227C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.138+23C>G
  variant of: http://identifiers.org/hgnc/12326
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

X-54948755-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948755
    reference: chr 0
allele count: 577
allele frequency: 9.225800262223785e-3
allele num: 62542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-256T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-42+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-88+235T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1444T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-343T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-343T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-42+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.138+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-343T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.45+31T>C
  variant of: http://identifiers.org/hgnc/12326
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 2.25e1
  variant carriers: 78
genotype quality: GenotypeQuality
num of homozygotes: 12
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

X-54948773-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948773
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948773
    reference: chr 0
allele count: 1
allele frequency: 1.700622427808578e-5
allele num: 58802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-238C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-325C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-42+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-325C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-325C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-42+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1462C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-87-238C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.138+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.45+49C>A
  variant of: http://identifiers.org/hgnc/12326
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

X-54948969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948969
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948969
    reference: chr 0
allele count: 4
allele frequency: 7.554724535856612e-5
allele num: 52947
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-87-42C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.46-42C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-129C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+245C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.46-42C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-42C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.46-42C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-88C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-88C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+245C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+245C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.46-42C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1658C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-129C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-129C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.46-42C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+245C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.139-42C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.46-42C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.46-42C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-54948971-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948971
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948971
    reference: chr 0
allele count: 1
allele frequency: 1.854358670053962e-5
allele num: 53927
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+247A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-86A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-127A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-87-40A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-127A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-127A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-40A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.46-40A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-86A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.46-40A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.46-40A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.46-40A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+247A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.139-40A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.46-40A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.46-40A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+247A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+247A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1660A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.46-40A>C
  variant of: http://identifiers.org/hgnc/12326
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21445
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

X-54948983-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948983
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948983
    reference: chr 0
allele count: 1
allele frequency: 1.785331714632579e-5
allele num: 56012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.46-28C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-28C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+259C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-115C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-115C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+259C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.46-28C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.139-28C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.46-28C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-74C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.46-28C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.46-28C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.46-28C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-115C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-74C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1672C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+259C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-87-28C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+259C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.46-28C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

X-54948985-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948985
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948985
    reference: chr 0
allele count: 1
allele frequency: 1.761400665809452e-5
allele num: 56773
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.46-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-87-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-72A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+261A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.46-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.139-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+261A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.46-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-72A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-113A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+261A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+261A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-113A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-113A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.46-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.46-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.46-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.46-26A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1674A>G
  variant of: http://identifiers.org/hgnc/12326
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22347
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD

X-54948988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054948988
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054948988
    reference: chr 0
allele count: 7
allele frequency: 1.212310143572158e-4
allele num: 57741
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-23G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+264G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.46-23G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-110G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1677G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+264G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-110G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.46-23G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-69G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-110G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-87-23G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.46-23G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-69G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.46-23G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+264G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.46-23G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.139-23G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+264G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.46-23G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.46-23G>A
  variant of: http://identifiers.org/hgnc/12326
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

X-54949003-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949003
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949003
    reference: chr 0
allele count: 44
allele frequency: 6.875322280731909e-4
allele num: 63997
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-54G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.46-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.46-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.46-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.46-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-54G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.139-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.46-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+279G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.46-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1692G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.46-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+279G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-95G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-95G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+279G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+279G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-87-8G>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-95G>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.46-8G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-54949009-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949009
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949009
    reference: chr 0
allele count: 1
allele frequency: 1.486215352604592e-5
allele num: 67285
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-89A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.46-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+285A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.46-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1698A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-48A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+285A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.46-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-89A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-87-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.46-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.46-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.139-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-48A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-89A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.46-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.46-2A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+285A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+285A>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.46-2A>T
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-54949011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949011
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949011
    reference: chr 0
allele count: 1
allele frequency: 1.464171718059094e-5
allele num: 68298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+287G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.46G>A
  hgvsp: ENSP00000406574.1:p.Gly16Ser
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.46G>A
  hgvsp: ENSP00000404645.1:p.Gly16Ser
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.46G>A
  hgvsp: ENSP00000364162.4:p.Gly16Ser
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+287G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.46G>A
  hgvsp: ENSP00000404767.1:p.Gly16Ser
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+287G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+287G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1700G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.46G>A
  hgvsp: ENSP00000173898.7:p.Gly16Ser
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.46G>A
  hgvsp: ENSP00000318278.8:p.Gly16Ser
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.139G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.46G>A
  hgvsp: ENSP00000404794.1:p.Gly16Ser
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-46G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly16Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-54949027-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949027
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949027
    reference: chr 0
allele count: 2
allele frequency: 2.633311389071758e-5
allele num: 75950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.62C>A
  hgvsp: ENSP00000318278.8:p.Pro21Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.62C>A
  hgvsp: ENSP00000364162.4:p.Pro21Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1716C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+303C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+303C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+303C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-71C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.62C>A
  hgvsp: ENSP00000404794.1:p.Pro21Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.62C>A
  hgvsp: ENSP00000173898.7:p.Pro21Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.155C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-71C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.62C>A
  hgvsp: ENSP00000404767.1:p.Pro21Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-30C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.62C>A
  hgvsp: ENSP00000406574.1:p.Pro21Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-71C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.62C>A
  hgvsp: ENSP00000404645.1:p.Pro21Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-30C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-71C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-71C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+303C>A
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro21Gln
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-54949027-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949027
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949027
    reference: chr 0
allele count: 19
allele frequency: 2.50164581961817e-4
allele num: 75950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-71C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1716C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.155C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-30C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.62C>T
  hgvsp: ENSP00000318278.8:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+303C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+303C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-71C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+303C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-71C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.62C>T
  hgvsp: ENSP00000404767.1:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.62C>T
  hgvsp: ENSP00000173898.7:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.62C>T
  hgvsp: ENSP00000404645.1:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.62C>T
  hgvsp: ENSP00000364162.4:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-71C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-71C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.62C>T
  hgvsp: ENSP00000406574.1:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+303C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-30C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.62C>T
  hgvsp: ENSP00000404794.1:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro21Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

X-54949029-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949029
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949029
    reference: chr 0
allele count: 1
allele frequency: 1.301405517959396e-5
allele num: 76840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-28G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.64G>A
  hgvsp: ENSP00000364162.4:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.64G>A
  hgvsp: ENSP00000404767.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+305G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.64G>A
  hgvsp: ENSP00000404794.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.64G>A
  hgvsp: ENSP00000318278.8:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+305G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1718G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.64G>A
  hgvsp: ENSP00000173898.7:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.64G>A
  hgvsp: ENSP00000404645.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-28G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.157G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+305G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.64G>A
  hgvsp: ENSP00000406574.1:p.Gly22Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+305G>A
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly22Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-54949034-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949034
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949034
    reference: chr 0
allele count: 1
allele frequency: 1.280606495236144e-5
allele num: 78088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.162C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.69C>G
  hgvsp: ENSP00000318278.8:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+310C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1723C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-23C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.69C>G
  hgvsp: ENSP00000364162.4:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.69C>G
  hgvsp: ENSP00000404794.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-64C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+310C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-64C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.69C>G
  hgvsp: ENSP00000173898.7:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.69C>G
  hgvsp: ENSP00000406574.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-64C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.69C>G
  hgvsp: ENSP00000404767.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+310C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.69C>G
  hgvsp: ENSP00000404645.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-64C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+310C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-64C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-23C>G
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser23Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

X-54949040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949040
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949040
    reference: chr 0
allele count: 62
allele frequency: 7.783957514657695e-4
allele num: 79651
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.75G>A
  hgvsp: ENST00000416704.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+316G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-58G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.75G>A
  hgvsp: ENST00000319167.8:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.75G>A
  hgvsp: ENST00000442098.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+316G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-58G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.75G>A
  hgvsp: ENST00000440759.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.75G>A
  hgvsp: ENST00000375022.4:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.168G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+316G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-58G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.75G>A
  hgvsp: ENST00000445561.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-58G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-17G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1729G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+316G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-17G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-58G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.75G>A
  hgvsp: ENST00000173898.7:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly25Gly
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

X-54949051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949051
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949051
    reference: chr 0
allele count: 1
allele frequency: 1.228667264618069e-5
allele num: 81389
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+327C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.179C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.86C>T
  hgvsp: ENSP00000318278.8:p.Pro29Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-41-6C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.86C>T
  hgvsp: ENSP00000173898.7:p.Pro29Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.86C>T
  hgvsp: ENSP00000404794.1:p.Pro29Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.86C>T
  hgvsp: ENSP00000406574.1:p.Pro29Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.86C>T
  hgvsp: ENSP00000364162.4:p.Pro29Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.86C>T
  hgvsp: ENSP00000404767.1:p.Pro29Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+327C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-41-6C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.86C>T
  hgvsp: ENSP00000404645.1:p.Pro29Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1740C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+327C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+327C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro29Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-54949056-GATATACAGACTGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949056
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949043
    reference: chr 0
allele count: 1
allele frequency: 1.220047825874774e-5
allele num: 81964
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsp: ENSP00000173898.7:p.Asp31GlyfsTer10
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsp: ENSP00000404767.1:p.Asp31GlyfsTer10
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsp: ENSP00000318278.8:p.Asp31GlyfsTer10
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsp: ENSP00000404645.1:p.Asp31GlyfsTer10
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsp: ENSP00000406574.1:p.Asp31GlyfsTer10
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsp: ENSP00000364162.4:p.Asp31GlyfsTer10
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsp: ENSP00000404794.1:p.Asp31GlyfsTer10
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp31GlyfsTer10
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: GATATACAGACTGA
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

X-54949060-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949060
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949060
    reference: chr 0
allele count: 2
allele frequency: 2.4282158683907e-5
allele num: 82365
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.95T>C
  hgvsp: ENSP00000364162.4:p.Ile32Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.95T>C
  hgvsp: ENSP00000318278.8:p.Ile32Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+336T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.95T>C
  hgvsp: ENSP00000406574.1:p.Ile32Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.95T>C
  hgvsp: ENSP00000404794.1:p.Ile32Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1749T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+336T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.95T>C
  hgvsp: ENSP00000404767.1:p.Ile32Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.95T>C
  hgvsp: ENSP00000173898.7:p.Ile32Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.95T>C
  hgvsp: ENSP00000404645.1:p.Ile32Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.188T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-38T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+336T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+336T>C
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile32Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-54949074-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949074
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949074
    reference: chr 0
allele count: 3
allele frequency: 3.626867836936022e-5
allele num: 82716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+350A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.109A>G
  hgvsp: ENSP00000318278.8:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.109A>G
  hgvsp: ENSP00000404794.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.109A>G
  hgvsp: ENSP00000364162.4:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.109A>G
  hgvsp: ENSP00000173898.7:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.109A>G
  hgvsp: ENSP00000404767.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+350A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.202A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.109A>G
  hgvsp: ENSP00000404645.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1763A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.109A>G
  hgvsp: ENSP00000406574.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+350A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+350A>G
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr37Ala
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-54949080-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949080
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949080
    reference: chr 0
allele count: 1
allele frequency: 1.206956899569116e-5
allele num: 82853
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.115G>C
  hgvsp: ENSP00000318278.8:p.Glu39Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.115G>C
  hgvsp: ENSP00000406574.1:p.Glu39Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.115G>C
  hgvsp: ENSP00000173898.7:p.Glu39Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.115G>C
  hgvsp: ENSP00000404767.1:p.Glu39Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+356G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.115G>C
  hgvsp: ENSP00000364162.4:p.Glu39Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.115G>C
  hgvsp: ENSP00000404794.1:p.Glu39Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.115G>C
  hgvsp: ENSP00000404645.1:p.Glu39Gln
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+356G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+356G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+356G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.208G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1769G>C
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu39Gln
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

X-54949082-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949082
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949082
    reference: chr 0
allele count: 1
allele frequency: 1.208342395901303e-5
allele num: 82758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+358G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.117G>C
  hgvsp: ENSP00000406574.1:p.Glu39Asp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+358G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.117G>C
  hgvsp: ENSP00000318278.8:p.Glu39Asp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.117G>C
  hgvsp: ENSP00000404645.1:p.Glu39Asp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+358G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-172+1771G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.117G>C
  hgvsp: ENSP00000404767.1:p.Glu39Asp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.210G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.117G>C
  hgvsp: ENSP00000404794.1:p.Glu39Asp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.117G>C
  hgvsp: ENSP00000364162.4:p.Glu39Asp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.117G>C
  hgvsp: ENSP00000173898.7:p.Glu39Asp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+358G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu39Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-54949106-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949106
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949106
    reference: chr 0
allele count: 1
allele frequency: 1.242035447691677e-5
allele num: 80513
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.141C>A
  hgvsp: ENST00000445561.1:c.141C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+382C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.141C>A
  hgvsp: ENST00000173898.7:c.141C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1778C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+382C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.9C>A
  hgvsp: ENST00000449980.1:c.9C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.141C>A
  hgvsp: ENST00000442098.1:c.141C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.141C>A
  hgvsp: ENST00000416704.1:c.141C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.141C>A
  hgvsp: ENST00000319167.8:c.141C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.9C>A
  hgvsp: ENST00000427099.1:c.9C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.9C>A
  hgvsp: ENST00000430420.1:c.9C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.234C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.141C>A
  hgvsp: ENST00000375022.4:c.141C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+382C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405043
  ensembl transcript: ENST00000440072
  gene symbol: TRO
  hgvsc: ENST00000440072.1:c.9C>A
  hgvsp: ENST00000440072.1:c.9C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.141C>A
  hgvsp: ENST00000440759.1:c.141C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+382C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.9C>A
  hgvsp: ENST00000453081.1:c.9C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.9C>A
  hgvsp: ENST00000452830.1:c.9C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.9C>A
  hgvsp: ENST00000411534.1:c.9C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr47Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-54949114-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949114
    reference: chr 0
allele count: 2
allele frequency: 2.528700753552825e-5
allele num: 79092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.17C>T
  hgvsp: ENSP00000412588.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.17C>T
  hgvsp: ENSP00000392841.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.17C>T
  hgvsp: ENSP00000387676.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+390C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1770C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+390C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.149C>T
  hgvsp: ENSP00000364162.4:p.Ala50Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.149C>T
  hgvsp: ENSP00000404767.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.149C>T
  hgvsp: ENSP00000404645.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.17C>T
  hgvsp: ENSP00000405311.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.149C>T
  hgvsp: ENSP00000406574.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.149C>T
  hgvsp: ENSP00000404794.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.17C>T
  hgvsp: ENSP00000411717.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.149C>T
  hgvsp: ENSP00000318278.8:p.Ala50Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.149C>T
  hgvsp: ENSP00000173898.7:p.Ala50Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+390C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.242C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+390C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.17C>T
  hgvsp: ENSP00000388947.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala50Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

X-54949121-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949121
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949121
    reference: chr 0
allele count: 2
allele frequency: 2.573505758219134e-5
allele num: 77715
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.156C>G
  hgvsp: ENST00000375022.4:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+397C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.156C>G
  hgvsp: ENST00000442098.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.156C>G
  hgvsp: ENST00000173898.7:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.156C>G
  hgvsp: ENST00000440759.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+397C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.24C>G
  hgvsp: ENST00000453081.1:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.156C>G
  hgvsp: ENST00000416704.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+397C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.249C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.24C>G
  hgvsp: ENST00000427099.1:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.24C>G
  hgvsp: ENST00000411534.1:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.24C>G
  hgvsp: ENST00000430420.1:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.156C>G
  hgvsp: ENST00000319167.8:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+397C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.156C>G
  hgvsp: ENST00000445561.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.24C>G
  hgvsp: ENST00000452830.1:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1763C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.24C>G
  hgvsp: ENST00000449980.1:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr52Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-54949142-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949142
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949142
    reference: chr 0
allele count: 3
allele frequency: 4.071440204114869e-5
allele num: 73684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.45C>T
  hgvsp: ENST00000453081.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.270C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.45C>T
  hgvsp: ENST00000449980.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.45C>T
  hgvsp: ENST00000427099.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.45C>T
  hgvsp: ENST00000452830.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.177C>T
  hgvsp: ENST00000445561.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.177C>T
  hgvsp: ENST00000173898.7:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+418C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.177C>T
  hgvsp: ENST00000416704.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.177C>T
  hgvsp: ENST00000440759.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.177C>T
  hgvsp: ENST00000375022.4:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1742C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+418C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.177C>T
  hgvsp: ENST00000319167.8:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+418C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.45C>T
  hgvsp: ENST00000430420.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.45C>T
  hgvsp: ENST00000411534.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+418C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.177C>T
  hgvsp: ENST00000442098.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp59Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-54949144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949144
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949144
    reference: chr 0
allele count: 1
allele frequency: 1.371986774047498e-5
allele num: 72887
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.272C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.179C>T
  hgvsp: ENSP00000173898.7:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.179C>T
  hgvsp: ENSP00000406574.1:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.47C>T
  hgvsp: ENSP00000411717.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.179C>T
  hgvsp: ENSP00000404645.1:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+420C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.47C>T
  hgvsp: ENSP00000387676.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.47C>T
  hgvsp: ENSP00000405311.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+420C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+420C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.179C>T
  hgvsp: ENSP00000404767.1:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.47C>T
  hgvsp: ENSP00000412588.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.47C>T
  hgvsp: ENSP00000392841.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.179C>T
  hgvsp: ENSP00000364162.4:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.47C>T
  hgvsp: ENSP00000388947.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+420C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.179C>T
  hgvsp: ENSP00000318278.8:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.179C>T
  hgvsp: ENSP00000404794.1:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1740C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro60Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

X-54949153-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949153
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949153
    reference: chr 0
allele count: 6
allele frequency: 8.485482753256303e-5
allele num: 70709
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.188T>G
  hgvsp: ENSP00000404794.1:p.Val63Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.56T>G
  hgvsp: ENSP00000388947.1:p.Val19Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.56T>G
  hgvsp: ENSP00000405311.1:p.Val19Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.188T>G
  hgvsp: ENSP00000406574.1:p.Val63Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.56T>G
  hgvsp: ENSP00000411717.1:p.Val19Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.188T>G
  hgvsp: ENSP00000173898.7:p.Val63Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.56T>G
  hgvsp: ENSP00000412588.1:p.Val19Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.188T>G
  hgvsp: ENSP00000364162.4:p.Val63Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.188T>G
  hgvsp: ENSP00000318278.8:p.Val63Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.188T>G
  hgvsp: ENSP00000404645.1:p.Val63Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.56T>G
  hgvsp: ENSP00000387676.1:p.Val19Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+429T>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.56T>G
  hgvsp: ENSP00000392841.1:p.Val19Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.188T>G
  hgvsp: ENSP00000404767.1:p.Val63Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1731T>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+429T>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+429T>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.281T>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+429T>G
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val63Gly
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

X-54949158-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949158
    reference: chr 0
allele count: 1
allele frequency: 1.437835195329911e-5
allele num: 69549
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.193C>G
  hgvsp: ENSP00000364162.4:p.Arg65Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.61C>G
  hgvsp: ENSP00000411717.1:p.Arg21Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.61C>G
  hgvsp: ENSP00000387676.1:p.Arg21Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.193C>G
  hgvsp: ENSP00000404645.1:p.Arg65Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.61C>G
  hgvsp: ENSP00000412588.1:p.Arg21Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+434C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.61C>G
  hgvsp: ENSP00000388947.1:p.Arg21Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.61C>G
  hgvsp: ENSP00000392841.1:p.Arg21Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.61C>G
  hgvsp: ENSP00000405311.1:p.Arg21Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.286C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.193C>G
  hgvsp: ENSP00000173898.7:p.Arg65Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1726C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+434C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.193C>G
  hgvsp: ENSP00000318278.8:p.Arg65Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.193C>G
  hgvsp: ENSP00000406574.1:p.Arg65Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.193C>G
  hgvsp: ENSP00000404767.1:p.Arg65Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.193C>G
  hgvsp: ENSP00000404794.1:p.Arg65Gly
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+434C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+434C>G
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg65Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

X-54949158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949158
    reference: chr 0
allele count: 84
allele frequency: 1.207781564077126e-3
allele num: 69549
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.193C>T
  hgvsp: ENSP00000173898.7:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.61C>T
  hgvsp: ENSP00000388947.1:p.Arg21Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000474933
  gene symbol: TRO
  hgvsc: ENST00000474933.2:n.286C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.193C>T
  hgvsp: ENSP00000406574.1:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.193C>T
  hgvsp: ENSP00000318278.8:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.61C>T
  hgvsp: ENSP00000387676.1:p.Arg21Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.193C>T
  hgvsp: ENSP00000404794.1:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.193C>T
  hgvsp: ENSP00000404767.1:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.61C>T
  hgvsp: ENSP00000392841.1:p.Arg21Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.61C>T
  hgvsp: ENSP00000412588.1:p.Arg21Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.193C>T
  hgvsp: ENSP00000364162.4:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.61C>T
  hgvsp: ENSP00000405311.1:p.Arg21Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.61C>T
  hgvsp: ENSP00000411717.1:p.Arg21Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+434C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+434C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1726C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.193C>T
  hgvsp: ENSP00000404645.1:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+434C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+434C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg65Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum

X-54949190-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949190
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949190
    reference: chr 0
allele count: 466
allele frequency: 7.542527879837496e-3
allele num: 61783
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.225T>C
  hgvsp: ENST00000173898.7:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.225T>C
  hgvsp: ENST00000445561.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.225T>C
  hgvsp: ENST00000319167.8:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.225T>C
  hgvsp: ENST00000442098.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.93T>C
  hgvsp: ENST00000449980.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.93T>C
  hgvsp: ENST00000427099.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.93T>C
  hgvsp: ENST00000411534.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.225T>C
  hgvsp: ENST00000416704.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.225T>C
  hgvsp: ENST00000375022.4:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.225T>C
  hgvsp: ENST00000440759.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.93T>C
  hgvsp: ENST00000452830.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+466T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.93T>C
  hgvsp: ENST00000453081.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.93T>C
  hgvsp: ENST00000430420.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+466T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+466T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1694T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+466T>C
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Pro75Pro
num of homozygotes: 2
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

X-54949203-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949203
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949203
    reference: chr 0
allele count: 1
allele frequency: 1.649919978881024e-5
allele num: 60609
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.238A>G
  hgvsp: ENSP00000406574.1:p.Thr80Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.238A>G
  hgvsp: ENSP00000364162.4:p.Thr80Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+479A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.238A>G
  hgvsp: ENSP00000318278.8:p.Thr80Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.106A>G
  hgvsp: ENSP00000405311.1:p.Thr36Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.106A>G
  hgvsp: ENSP00000392841.1:p.Thr36Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.106A>G
  hgvsp: ENSP00000387676.1:p.Thr36Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.238A>G
  hgvsp: ENSP00000404767.1:p.Thr80Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.238A>G
  hgvsp: ENSP00000173898.7:p.Thr80Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.106A>G
  hgvsp: ENSP00000411717.1:p.Thr36Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.106A>G
  hgvsp: ENSP00000412588.1:p.Thr36Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+479A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.238A>G
  hgvsp: ENSP00000404645.1:p.Thr80Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+479A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1681A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+479A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.106A>G
  hgvsp: ENSP00000388947.1:p.Thr36Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.238A>G
  hgvsp: ENSP00000404794.1:p.Thr80Ala
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr80Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-54949209-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949209
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949209
    reference: chr 0
allele count: 2
allele frequency: 3.337950831984245e-5
allele num: 59917
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.244G>C
  hgvsp: ENSP00000173898.7:p.Ala82Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.112G>C
  hgvsp: ENSP00000392841.1:p.Ala38Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.112G>C
  hgvsp: ENSP00000388947.1:p.Ala38Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+485G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.244G>C
  hgvsp: ENSP00000404767.1:p.Ala82Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.112G>C
  hgvsp: ENSP00000412588.1:p.Ala38Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.244G>C
  hgvsp: ENSP00000406574.1:p.Ala82Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.244G>C
  hgvsp: ENSP00000318278.8:p.Ala82Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+485G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.244G>C
  hgvsp: ENSP00000364162.4:p.Ala82Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.244G>C
  hgvsp: ENSP00000404645.1:p.Ala82Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.112G>C
  hgvsp: ENSP00000387676.1:p.Ala38Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1675G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+485G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.112G>C
  hgvsp: ENSP00000411717.1:p.Ala38Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+485G>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.244G>C
  hgvsp: ENSP00000404794.1:p.Ala82Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.112G>C
  hgvsp: ENSP00000405311.1:p.Ala38Pro
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala82Pro
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-54949228-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949228
    reference: chr 0
allele count: 1
allele frequency: 1.627816121890871e-5
allele num: 61432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+504C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.263C>T
  hgvsp: ENSP00000318278.8:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.131C>T
  hgvsp: ENSP00000388947.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.263C>T
  hgvsp: ENSP00000404794.1:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.131C>T
  hgvsp: ENSP00000411717.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.263C>T
  hgvsp: ENSP00000404645.1:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.263C>T
  hgvsp: ENSP00000404767.1:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+504C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.263C>T
  hgvsp: ENSP00000364162.4:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.131C>T
  hgvsp: ENSP00000392841.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.131C>T
  hgvsp: ENSP00000412588.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.263C>T
  hgvsp: ENSP00000406574.1:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.263C>T
  hgvsp: ENSP00000173898.7:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+504C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.131C>T
  hgvsp: ENSP00000405311.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.131C>T
  hgvsp: ENSP00000387676.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1656C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+504C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro88Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

X-54949232-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949232
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949232
    reference: chr 0
allele count: 1
allele frequency: 1.617835013185355e-5
allele num: 61811
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.267C>T
  hgvsp: ENST00000173898.7:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+508C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.135C>T
  hgvsp: ENST00000411534.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.267C>T
  hgvsp: ENST00000445561.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+508C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1652C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.135C>T
  hgvsp: ENST00000453081.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.135C>T
  hgvsp: ENST00000427099.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.267C>T
  hgvsp: ENST00000442098.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.267C>T
  hgvsp: ENST00000416704.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.267C>T
  hgvsp: ENST00000375022.4:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.135C>T
  hgvsp: ENST00000430420.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.135C>T
  hgvsp: ENST00000452830.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+508C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.267C>T
  hgvsp: ENST00000440759.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.267C>T
  hgvsp: ENST00000319167.8:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.135C>T
  hgvsp: ENST00000449980.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+508C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val89Val
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-54949240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949240
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949240
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 63099
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+516C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.143C>T
  hgvsp: ENSP00000411717.1:p.Ala48Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.275C>T
  hgvsp: ENSP00000318278.8:p.Ala92Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.143C>T
  hgvsp: ENSP00000392841.1:p.Ala48Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.275C>T
  hgvsp: ENSP00000404767.1:p.Ala92Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.275C>T
  hgvsp: ENSP00000404794.1:p.Ala92Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.275C>T
  hgvsp: ENSP00000364162.4:p.Ala92Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+516C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.143C>T
  hgvsp: ENSP00000387676.1:p.Ala48Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.275C>T
  hgvsp: ENSP00000173898.7:p.Ala92Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.143C>T
  hgvsp: ENSP00000405311.1:p.Ala48Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.143C>T
  hgvsp: ENSP00000388947.1:p.Ala48Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.275C>T
  hgvsp: ENSP00000404645.1:p.Ala92Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.275C>T
  hgvsp: ENSP00000406574.1:p.Ala92Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+516C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.143C>T
  hgvsp: ENSP00000412588.1:p.Ala48Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+516C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1644C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala92Val
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-54949253-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949253
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949253
    reference: chr 0
allele count: 1
allele frequency: 1.529847321237341e-5
allele num: 65366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.156C>A
  hgvsp: ENST00000411534.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.288C>A
  hgvsp: ENST00000375022.4:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.288C>A
  hgvsp: ENST00000445561.1:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.288C>A
  hgvsp: ENST00000440759.1:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.156C>A
  hgvsp: ENST00000430420.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+529C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.288C>A
  hgvsp: ENST00000173898.7:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.156C>A
  hgvsp: ENST00000453081.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.288C>A
  hgvsp: ENST00000319167.8:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.156C>A
  hgvsp: ENST00000452830.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.156C>A
  hgvsp: ENST00000427099.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.288C>A
  hgvsp: ENST00000416704.1:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.156C>A
  hgvsp: ENST00000449980.1:c.156C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.288C>A
  hgvsp: ENST00000442098.1:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+529C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+529C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1631C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+529C>A
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala96Ala
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

X-54949268-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949268
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949268
    reference: chr 0
allele count: 1
allele frequency: 1.467954552127066e-5
allele num: 68122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.303A>T
  hgvsp: ENSP00000404767.1:p.Lys101Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.303A>T
  hgvsp: ENSP00000406574.1:p.Lys101Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.303A>T
  hgvsp: ENSP00000404645.1:p.Lys101Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+544A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.171A>T
  hgvsp: ENSP00000392841.1:p.Lys57Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.303A>T
  hgvsp: ENSP00000364162.4:p.Lys101Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+544A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+544A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.171A>T
  hgvsp: ENSP00000412588.1:p.Lys57Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.171A>T
  hgvsp: ENSP00000405311.1:p.Lys57Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.303A>T
  hgvsp: ENSP00000173898.7:p.Lys101Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.303A>T
  hgvsp: ENSP00000404794.1:p.Lys101Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.171A>T
  hgvsp: ENSP00000411717.1:p.Lys57Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.303A>T
  hgvsp: ENSP00000318278.8:p.Lys101Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.171A>T
  hgvsp: ENSP00000388947.1:p.Lys57Asn
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+544A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1616A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.171A>T
  hgvsp: ENSP00000387676.1:p.Lys57Asn
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys101Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

X-54949279-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949279
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949279
    reference: chr 0
allele count: 1
allele frequency: 1.433753423086298e-5
allele num: 69747
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.182A>C
  hgvsp: ENSP00000387676.1:p.Gln61Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+555A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.314A>C
  hgvsp: ENSP00000404645.1:p.Gln105Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.314A>C
  hgvsp: ENSP00000173898.7:p.Gln105Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.314A>C
  hgvsp: ENSP00000404794.1:p.Gln105Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+555A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.314A>C
  hgvsp: ENSP00000364162.4:p.Gln105Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.314A>C
  hgvsp: ENSP00000318278.8:p.Gln105Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+555A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.314A>C
  hgvsp: ENSP00000406574.1:p.Gln105Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.182A>C
  hgvsp: ENSP00000405311.1:p.Gln61Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.182A>C
  hgvsp: ENSP00000412588.1:p.Gln61Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+555A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.314A>C
  hgvsp: ENSP00000404767.1:p.Gln105Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1605A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.182A>C
  hgvsp: ENSP00000392841.1:p.Gln61Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.182A>C
  hgvsp: ENSP00000388947.1:p.Gln61Pro
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.182A>C
  hgvsp: ENSP00000411717.1:p.Gln61Pro
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gln105Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: FS

X-54949288-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949288
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949288
    reference: chr 0
allele count: 2
allele frequency: 2.827214769369955e-5
allele num: 70741
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.191A>C
  hgvsp: ENSP00000405311.1:p.Asn64Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.323A>C
  hgvsp: ENSP00000173898.7:p.Asn108Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.323A>C
  hgvsp: ENSP00000364162.4:p.Asn108Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+564A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.191A>C
  hgvsp: ENSP00000411717.1:p.Asn64Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.323A>C
  hgvsp: ENSP00000406574.1:p.Asn108Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.323A>C
  hgvsp: ENSP00000404794.1:p.Asn108Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000387676
  ensembl transcript: ENST00000452830
  gene symbol: TRO
  hgvsc: ENST00000452830.1:c.191A>C
  hgvsp: ENSP00000387676.1:p.Asn64Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.191A>C
  hgvsp: ENSP00000392841.1:p.Asn64Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+564A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.323A>C
  hgvsp: ENSP00000404767.1:p.Asn108Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.323A>C
  hgvsp: ENSP00000318278.8:p.Asn108Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+564A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.191A>C
  hgvsp: ENSP00000388947.1:p.Asn64Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000412588
  ensembl transcript: ENST00000453081
  gene symbol: TRO
  hgvsc: ENST00000453081.1:c.191A>C
  hgvsp: ENSP00000412588.1:p.Asn64Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.323A>C
  hgvsp: ENSP00000404645.1:p.Asn108Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1596A>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+564A>C
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn108Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-54949330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949330
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949330
    reference: chr 0
allele count: 3
allele frequency: 3.826530612244898e-5
allele num: 78400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+606C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.233C>T
  hgvsp: ENSP00000392841.1:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.365C>T
  hgvsp: ENSP00000406574.1:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.365C>T
  hgvsp: ENSP00000364162.4:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.365C>T
  hgvsp: ENSP00000404645.1:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.365C>T
  hgvsp: ENSP00000404794.1:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+606C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.365C>T
  hgvsp: ENSP00000404767.1:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.233C>T
  hgvsp: ENSP00000405311.1:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+606C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.365C>T
  hgvsp: ENSP00000318278.8:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.233C>T
  hgvsp: ENSP00000411717.1:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.365C>T
  hgvsp: ENSP00000173898.7:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1554C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.233C>T
  hgvsp: ENSP00000388947.1:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+606C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr122Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-54949347-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949347
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949347
    reference: chr 0
allele count: 2
allele frequency: 2.489884842826019e-5
allele num: 80325
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.382C>G
  hgvsp: ENSP00000404794.1:p.Gln128Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+623C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.250C>G
  hgvsp: ENSP00000388947.1:p.Gln84Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.250C>G
  hgvsp: ENSP00000411717.1:p.Gln84Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+623C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.382C>G
  hgvsp: ENSP00000173898.7:p.Gln128Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.382C>G
  hgvsp: ENSP00000404645.1:p.Gln128Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.382C>G
  hgvsp: ENSP00000318278.8:p.Gln128Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.382C>G
  hgvsp: ENSP00000364162.4:p.Gln128Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+623C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.250C>G
  hgvsp: ENSP00000405311.1:p.Gln84Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.382C>G
  hgvsp: ENSP00000404767.1:p.Gln128Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.382C>G
  hgvsp: ENSP00000406574.1:p.Gln128Glu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+623C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1537C>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.250C>G
  hgvsp: ENSP00000392841.1:p.Gln84Glu
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln128Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

X-54949350-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949350
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949350
    reference: chr 0
allele count: 1
allele frequency: 1.238819652634969e-5
allele num: 80722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.385G>A
  hgvsp: ENSP00000173898.7:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+626G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.385G>A
  hgvsp: ENSP00000404794.1:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.253G>A
  hgvsp: ENSP00000388947.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.385G>A
  hgvsp: ENSP00000364162.4:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.385G>A
  hgvsp: ENSP00000404645.1:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.385G>A
  hgvsp: ENSP00000404767.1:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1534G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.385G>A
  hgvsp: ENSP00000406574.1:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.253G>A
  hgvsp: ENSP00000392841.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.385G>A
  hgvsp: ENSP00000318278.8:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.253G>A
  hgvsp: ENSP00000405311.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.253G>A
  hgvsp: ENSP00000411717.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+626G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+626G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+626G>A
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala129Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-54949352-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949352
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949352
    reference: chr 0
allele count: 1
allele frequency: 1.233836738722732e-5
allele num: 81048
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.387T>C
  hgvsp: ENST00000173898.7:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+628T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.387T>C
  hgvsp: ENST00000440759.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.387T>C
  hgvsp: ENST00000416704.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.255T>C
  hgvsp: ENST00000427099.1:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.255T>C
  hgvsp: ENST00000411534.1:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+628T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+628T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+628T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.255T>C
  hgvsp: ENST00000430420.1:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.387T>C
  hgvsp: ENST00000319167.8:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.387T>C
  hgvsp: ENST00000375022.4:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.387T>C
  hgvsp: ENST00000445561.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1532T>C
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.387T>C
  hgvsp: ENST00000442098.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.255T>C
  hgvsp: ENST00000449980.1:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala129Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

X-54949354-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949354
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949354
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 81226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.389C>T
  hgvsp: ENSP00000404794.1:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.389C>T
  hgvsp: ENSP00000406574.1:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.257C>T
  hgvsp: ENSP00000411717.1:p.Ser86Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+630C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.389C>T
  hgvsp: ENSP00000173898.7:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.389C>T
  hgvsp: ENSP00000318278.8:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.389C>T
  hgvsp: ENSP00000404645.1:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.257C>T
  hgvsp: ENSP00000392841.1:p.Ser86Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.257C>T
  hgvsp: ENSP00000405311.1:p.Ser86Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.257C>T
  hgvsp: ENSP00000388947.1:p.Ser86Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.389C>T
  hgvsp: ENSP00000404767.1:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.389C>T
  hgvsp: ENSP00000364162.4:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+630C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+630C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1530C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+630C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 31897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser130Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

X-54949382-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949382
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949382
    reference: chr 0
allele count: 1
allele frequency: 1.186816838557306e-5
allele num: 84259
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1502C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.417C>A
  hgvsp: ENST00000319167.8:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.417C>A
  hgvsp: ENST00000375022.4:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.417C>A
  hgvsp: ENST00000442098.1:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.285C>A
  hgvsp: ENST00000449980.1:c.285C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.285C>A
  hgvsp: ENST00000411534.1:c.285C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.417C>A
  hgvsp: ENST00000445561.1:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.285C>A
  hgvsp: ENST00000427099.1:c.285C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+658C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.417C>A
  hgvsp: ENST00000173898.7:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.285C>A
  hgvsp: ENST00000430420.1:c.285C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+658C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.417C>A
  hgvsp: ENST00000416704.1:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+658C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+658C>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.417C>A
  hgvsp: ENST00000440759.1:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala139Ala
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-54949382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949382
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949382
    reference: chr 0
allele count: 1
allele frequency: 1.186816838557306e-5
allele num: 84259
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.417C>T
  hgvsp: ENST00000375022.4:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+658C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.417C>T
  hgvsp: ENST00000416704.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.417C>T
  hgvsp: ENST00000442098.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.417C>T
  hgvsp: ENST00000440759.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.285C>T
  hgvsp: ENST00000430420.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.417C>T
  hgvsp: ENST00000173898.7:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+658C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.417C>T
  hgvsp: ENST00000445561.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.285C>T
  hgvsp: ENST00000411534.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.285C>T
  hgvsp: ENST00000449980.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.417C>T
  hgvsp: ENST00000319167.8:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+658C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.285C>T
  hgvsp: ENST00000427099.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1502C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+658C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala139Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-54949394-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949394
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949394
    reference: chr 0
allele count: 13
allele frequency: 1.528854182592231e-4
allele num: 85031
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.429G>A
  hgvsp: ENST00000416704.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.297G>A
  hgvsp: ENST00000427099.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.429G>A
  hgvsp: ENST00000445561.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.429G>A
  hgvsp: ENST00000440759.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+670G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.429G>A
  hgvsp: ENST00000442098.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+670G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.429G>A
  hgvsp: ENST00000319167.8:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+670G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+670G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1490G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.429G>A
  hgvsp: ENST00000375022.4:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.429G>A
  hgvsp: ENST00000173898.7:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.297G>A
  hgvsp: ENST00000430420.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.297G>A
  hgvsp: ENST00000449980.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.297G>A
  hgvsp: ENST00000411534.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys143Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

X-54949405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949405
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949405
    reference: chr 0
allele count: 1
allele frequency: 1.169877981726506e-5
allele num: 85479
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.440C>T
  hgvsp: ENSP00000406574.1:p.Ala147Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.308C>T
  hgvsp: ENSP00000388947.1:p.Ala103Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.440C>T
  hgvsp: ENSP00000404767.1:p.Ala147Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.440C>T
  hgvsp: ENSP00000173898.7:p.Ala147Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.308C>T
  hgvsp: ENSP00000392841.1:p.Ala103Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.440C>T
  hgvsp: ENSP00000318278.8:p.Ala147Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.440C>T
  hgvsp: ENSP00000364162.4:p.Ala147Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.440C>T
  hgvsp: ENSP00000404794.1:p.Ala147Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+681C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.308C>T
  hgvsp: ENSP00000411717.1:p.Ala103Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.308C>T
  hgvsp: ENSP00000405311.1:p.Ala103Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1479C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+681C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+681C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.440C>T
  hgvsp: ENSP00000404645.1:p.Ala147Val
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+681C>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala147Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

X-54949427-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949427
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949427
    reference: chr 0
allele count: 10
allele frequency: 1.16266902300922e-4
allele num: 86009
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.462A>G
  hgvsp: ENST00000416704.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+703A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.462A>G
  hgvsp: ENST00000319167.8:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.462A>G
  hgvsp: ENST00000173898.7:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.330A>G
  hgvsp: ENST00000449980.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.462A>G
  hgvsp: ENST00000375022.4:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.330A>G
  hgvsp: ENST00000430420.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.330A>G
  hgvsp: ENST00000427099.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+703A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.462A>G
  hgvsp: ENST00000445561.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+703A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+703A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.330A>G
  hgvsp: ENST00000411534.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.462A>G
  hgvsp: ENST00000440759.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.462A>G
  hgvsp: ENST00000442098.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1457A>G
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln154Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-54949435-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949435
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949435
    reference: chr 0
allele count: 1
allele frequency: 1.162250116225012e-5
allele num: 86040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.470C>T
  hgvsp: ENSP00000404767.1:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.338C>T
  hgvsp: ENSP00000392841.1:p.Thr113Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.338C>T
  hgvsp: ENSP00000388947.1:p.Thr113Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.470C>T
  hgvsp: ENSP00000318278.8:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+711C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+711C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.470C>T
  hgvsp: ENSP00000404645.1:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.470C>T
  hgvsp: ENSP00000364162.4:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.470C>T
  hgvsp: ENSP00000173898.7:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.470C>T
  hgvsp: ENSP00000404794.1:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.338C>T
  hgvsp: ENSP00000405311.1:p.Thr113Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1449C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+711C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+711C>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.338C>T
  hgvsp: ENSP00000411717.1:p.Thr113Ile
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.470C>T
  hgvsp: ENSP00000406574.1:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr157Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-54949441-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949441
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949441
    reference: chr 0
allele count: 1
allele frequency: 1.161777519604996e-5
allele num: 86075
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.476A>T
  hgvsp: ENSP00000406574.1:p.His159Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+717A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.476A>T
  hgvsp: ENSP00000404645.1:p.His159Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+717A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+717A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.476A>T
  hgvsp: ENSP00000404767.1:p.His159Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.344A>T
  hgvsp: ENSP00000405311.1:p.His115Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.476A>T
  hgvsp: ENSP00000404794.1:p.His159Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.344A>T
  hgvsp: ENSP00000388947.1:p.His115Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.476A>T
  hgvsp: ENSP00000173898.7:p.His159Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.476A>T
  hgvsp: ENSP00000364162.4:p.His159Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.476A>T
  hgvsp: ENSP00000318278.8:p.His159Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.344A>T
  hgvsp: ENSP00000411717.1:p.His115Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1443A>T
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.344A>T
  hgvsp: ENSP00000392841.1:p.His115Leu
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+717A>T
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His159Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

X-54949445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949445
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949445
    reference: chr 0
allele count: 1
allele frequency: 1.161710037174721e-5
allele num: 86080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.480G>A
  hgvsp: ENST00000416704.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.480G>A
  hgvsp: ENST00000173898.7:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.480G>A
  hgvsp: ENST00000375022.4:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.348G>A
  hgvsp: ENST00000411534.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.480G>A
  hgvsp: ENST00000445561.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1439G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+721G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.348G>A
  hgvsp: ENST00000427099.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.480G>A
  hgvsp: ENST00000319167.8:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.480G>A
  hgvsp: ENST00000442098.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.480G>A
  hgvsp: ENST00000440759.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+721G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+721G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.348G>A
  hgvsp: ENST00000430420.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.348G>A
  hgvsp: ENST00000449980.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+721G>A
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu160Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

X-54949452-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949452
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949452
    reference: chr 0
allele count: 1
allele frequency: 1.161561603419637e-5
allele num: 86091
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.487A>G
  hgvsp: ENSP00000406574.1:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.487A>G
  hgvsp: ENSP00000318278.8:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.487A>G
  hgvsp: ENSP00000404794.1:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+728A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+728A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.355A>G
  hgvsp: ENSP00000411717.1:p.Thr119Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.487A>G
  hgvsp: ENSP00000404767.1:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.355A>G
  hgvsp: ENSP00000392841.1:p.Thr119Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.355A>G
  hgvsp: ENSP00000388947.1:p.Thr119Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.487A>G
  hgvsp: ENSP00000404645.1:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.487A>G
  hgvsp: ENSP00000173898.7:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1432A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+728A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+728A>G
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.487A>G
  hgvsp: ENSP00000364162.4:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.355A>G
  hgvsp: ENSP00000405311.1:p.Thr119Ala
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr163Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

X-54949456-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949456
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949456
    reference: chr 0
allele count: 4
allele frequency: 4.645437019487608e-5
allele num: 86106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.491T>A
  hgvsp: ENSP00000404767.1:p.Ile164Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.491T>A
  hgvsp: ENSP00000318278.8:p.Ile164Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.359T>A
  hgvsp: ENSP00000392841.1:p.Ile120Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.491T>A
  hgvsp: ENSP00000364162.4:p.Ile164Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405311
  ensembl transcript: ENST00000427099
  gene symbol: TRO
  hgvsc: ENST00000427099.1:c.359T>A
  hgvsp: ENSP00000405311.1:p.Ile120Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+732T>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+732T>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+732T>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1428T>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.359T>A
  hgvsp: ENSP00000411717.1:p.Ile120Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.491T>A
  hgvsp: ENSP00000404645.1:p.Ile164Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.359T>A
  hgvsp: ENSP00000388947.1:p.Ile120Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.491T>A
  hgvsp: ENSP00000404794.1:p.Ile164Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+732T>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.491T>A
  hgvsp: ENSP00000406574.1:p.Ile164Lys
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.491T>A
  hgvsp: ENSP00000173898.7:p.Ile164Lys
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile164Lys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-54949466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24054949466
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24054949466
    reference: chr 0
allele count: 3
allele frequency: 3.48423962277299e-5
allele num: 86102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000382641
  ensembl transcript: ENST00000399736
  gene symbol: TRO
  hgvsc: ENST00000399736.1:c.45+742G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000173898
  ensembl transcript: ENST00000173898
  gene symbol: TRO
  hgvsc: ENST00000173898.7:c.501G>A
  hgvsp: ENST00000173898.7:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000392841
  ensembl transcript: ENST00000449980
  gene symbol: TRO
  hgvsc: ENST00000449980.1:c.369G>A
  hgvsp: ENST00000449980.1:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000405126
  ensembl transcript: ENST00000420798
  gene symbol: TRO
  hgvsc: ENST00000420798.2:c.-171-1418G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404645
  ensembl transcript: ENST00000442098
  gene symbol: TRO
  hgvsc: ENST00000442098.1:c.501G>A
  hgvsp: ENST00000442098.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364181
  ensembl transcript: ENST00000375041
  gene symbol: TRO
  hgvsc: ENST00000375041.2:c.45+742G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000388947
  ensembl transcript: ENST00000411534
  gene symbol: TRO
  hgvsc: ENST00000411534.1:c.369G>A
  hgvsp: ENST00000411534.1:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000318278
  ensembl transcript: ENST00000319167
  gene symbol: TRO
  hgvsc: ENST00000319167.8:c.501G>A
  hgvsp: ENST00000319167.8:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404767
  ensembl transcript: ENST00000416704
  gene symbol: TRO
  hgvsc: ENST00000416704.1:c.501G>A
  hgvsp: ENST00000416704.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000404794
  ensembl transcript: ENST00000445561
  gene symbol: TRO
  hgvsc: ENST00000445561.1:c.501G>A
  hgvsp: ENST00000445561.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000411717
  ensembl transcript: ENST00000430420
  gene symbol: TRO
  hgvsc: ENST00000430420.1:c.369G>A
  hgvsp: ENST00000430420.1:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000406574
  ensembl transcript: ENST00000440759
  gene symbol: TRO
  hgvsc: ENST00000440759.1:c.501G>A
  hgvsp: ENST00000440759.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000407996
  ensembl transcript: ENST00000431115
  gene symbol: TRO
  hgvsc: ENST00000431115.1:c.45+742G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067445
  ensembl transcript: ENST00000484031
  gene symbol: TRO
  hgvsc: ENST00000484031.1:n.216+742G>A
  variant of: http://identifiers.org/hgnc/12326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067445
  ensembl protein: ENSP00000364162
  ensembl transcript: ENST00000375022
  gene symbol: TRO
  hgvsc: ENST00000375022.4:c.501G>A
  hgvsp: ENST00000375022.4:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys167Lys
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 318
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 17606
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1234
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2189
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 351
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21495
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6279
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1434
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1592
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5694
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 435
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19885
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23651
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1604
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 645
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.904865649963689e-4
allele num: 6885
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5627
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.504664459825459e-4
allele num: 6646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36037
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.126e-1

FS
type: SiteQuality
SIO_000300: 1.515e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.438054e6

QD
type: SiteQuality
SIO_000300: 6.9e0

GenotypeDepth
all individuals: 231
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1434
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1592
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 351
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 188
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17606
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 21495
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1234
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6279
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5694
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2189
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 435
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 672
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19885
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23651
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.452432824981845e-4
allele num: 6885
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36037
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5627
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.438054e6

VQSLOD
type: SiteQuality
SIO_000300: -6.126e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 1.515e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1524
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1181
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7167
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5832
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17543
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 20343
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1763
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2189
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4653
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20426
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.780867630700779e-5
allele num: 35960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6639
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 429
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7491
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6893
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5605
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3005
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.228e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.427388e6

QD
type: SiteQuality
SIO_000300: 3.171e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.436e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeDepth
all individuals: 1610
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5871
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1192
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17487
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 425
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19580
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2189
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1911
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7707
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20718
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4653
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.509206157561123e-4
allele num: 6626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2997
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.461e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: -2.976e0

MQ
type: SiteQuality
SIO_000300: 5.831e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

DP
type: SiteQuality
SIO_000300: 1.420365e6

GenotypeDepth
all individuals: 231
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 423
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9560
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1992
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2464
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2189
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17018
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 163
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1146
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5725
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4653
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21554
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7381
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6815
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2941
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.028926245645919e-4
allele num: 6603
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35499
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

DP
type: SiteQuality
SIO_000300: 1.389757e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

FS
type: SiteQuality
SIO_000300: 4.575e0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

QD
type: SiteQuality
SIO_000300: 1.018e1

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000067445
ensembl protein: ENSP00000387676
ensembl transcript: ENST00000452830
gene symbol: TRO
hgvsc: ENST00000452830.1:c.-366C>T
variant of: http://identifiers.org/hgnc/12326

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17400
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5600
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2915
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2456
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14874
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10965
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1134
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2189
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4653
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 442
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6759
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6579
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35175
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5491
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2903
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.364841e6

VQSLOD
type: SiteQuality
SIO_000300: -1.306e-1

QD
type: SiteQuality
SIO_000300: 2.252e1

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9280
bin: 2.25e1
variant carriers: 3

GenotypeDepth
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4356
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14308
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4974
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4376
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1088
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2189
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 349
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4641
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4342
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3774
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11069
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4658
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6497
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5384
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 6.975446428571429e-4
allele num: 7168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2813
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6573
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34383
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

DP
type: SiteQuality
SIO_000300: 1.290405e6

FS
type: SiteQuality
SIO_000300: 3.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.75e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

GenotypeDepth
all individuals: 345
bin: 4.75e1
variant carriers: 14

GenotypeDepth
all individuals: 3716
bin: 2.75e1
variant carriers: 57

GenotypeDepth
all individuals: 6808
bin: 1.75e1
variant carriers: 120

GenotypeDepth
all individuals: 362
bin: 4.25e1
variant carriers: 19

GenotypeDepth
all individuals: 415
bin: 3.75e1
variant carriers: 19

GenotypeDepth
all individuals: 4983
bin: 2.5e0
variant carriers: 15

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 3

GenotypeDepth
all individuals: 261
bin: 5.75e1
variant carriers: 3

GenotypeDepth
all individuals: 184
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 16944
bin: 7.5e0
variant carriers: 54

GenotypeDepth
all individuals: 319
bin: 5.25e1
variant carriers: 6

GenotypeDepth
all individuals: 1012
bin: 3.25e1
variant carriers: 38

GenotypeDepth
all individuals: 233
bin: 6.25e1
variant carriers: 6

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 2

GenotypeDepth
all individuals: 177
bin: 7.25e1
variant carriers: 6

GenotypeDepth
all individuals: 2195
bin: 9.75e1
variant carriers: 92

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 2

GenotypeDepth
all individuals: 14824
bin: 1.25e1
variant carriers: 99

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4999
bin: 9.75e1
variant carriers: 480

GenotypeQuality
all individuals: 1921
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 8834
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4072
bin: 2.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1052
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 5384
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 267
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 340
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 20731
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 400
bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 362
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3033
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 814
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1662
bin: 1.75e1
variant carriers: 18

GenotypeQuality
all individuals: 740
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 5037
bin: 3.25e1
variant carriers: 20

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5355
num of homozygotes: 0

African
type: Population
allele count: 555
allele frequency: 8.607320099255583e-2
allele num: 6448
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2751
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 2.260525572195536e-3
allele num: 7078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.889975550122249e-3
allele num: 409
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.174846535671278e-4
allele num: 34047
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 1.701e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.397e-1

DP
type: SiteQuality
SIO_000300: 1.261435e6

GenotypeDepth
all individuals: 5386
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 815
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 263
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5412
bin: 2.25e1
variant carriers: 0

GenotypeDepth
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GenotypeQuality
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African
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East Asian
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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African
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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MQRankSum
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FS
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VQSLOD
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MQ
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DP
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GenotypeQuality
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African
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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VQSLOD
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MQ
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FS
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African
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South Asian
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VQSLOD
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variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 301
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 199
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3144
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21586
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3808
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 18339
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3769
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 397
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.449875724937863e-3
allele num: 4828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32877
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

DP
type: SiteQuality
SIO_000300: 8.69258e5

VQSLOD
type: SiteQuality
SIO_000300: 6.879999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.734e0

QD
type: SiteQuality
SIO_000300: 1.528e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.767e0

GenotypeDepth
all individuals: 1023
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1624
bin: 1.75e1
variant carriers: 15

GenotypeDepth
all individuals: 6974
bin: 1.25e1
variant carriers: 7

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 305
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1603
bin: 2.5e0
variant carriers: 2

GenotypeDepth
all individuals: 23787
bin: 2.25e1
variant carriers: 8

GenotypeDepth
all individuals: 19257
bin: 7.5e0
variant carriers: 17

GenotypeDepth
all individuals: 5213
bin: 2.75e1
variant carriers: 5

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19323
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 455
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 360
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 161
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 354
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 500
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2697
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 455
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 543
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1951
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26228
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1281
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 493
bin: 4.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 441
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

South Asian
type: Population
allele count: 44
allele frequency: 9.977324263038548e-3
allele num: 4410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7541
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3137
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.02e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.861e0

DP
type: SiteQuality
SIO_000300: 9.87562e5

FS
type: SiteQuality
SIO_000300: 6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 1.703e1

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27256
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1103
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17020
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1124
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5728
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1440
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5823
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 304
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7951
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38344
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.791472590469366e-4
allele num: 5582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4769
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.045749e6

MQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.18e-2

QD
type: SiteQuality
SIO_000300: 9.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000067445
ensembl protein: ENSP00000392841
ensembl transcript: ENST00000449980
gene symbol: TRO
hgvsc: ENST00000449980.1:c.-41-46G>A
variant of: http://identifiers.org/hgnc/12326

GenotypeDepth
all individuals: 19
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28150
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1437
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 307
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 36
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6057
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1021
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1121
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5426
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 137
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16288
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4907
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3339
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8075
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 467
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6943
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.76273576590869e-4
allele num: 5673
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

DP
type: SiteQuality
SIO_000300: 1.06285e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.27e0

VQSLOD
type: SiteQuality
SIO_000300: -3.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.185e0

GenotypeDepth
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1390
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 355
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 296
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9965
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3396
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1362
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34862
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 174
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39018
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 375
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10564
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6377
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 517
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.643495623505375e-5
allele num: 43071
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6195
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7313
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8727
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.81e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e0

DP
type: SiteQuality
SIO_000300: 1.202082e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 1.59e1

GenotypeDepth
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9965
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1390
bin: 3.25e1
variant carriers: 3

GenotypeDepth
all individuals: 19
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8188
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 1362
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 34862
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 45
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 5.25e1
variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 19
allele frequency: 2.598112949541912e-3
allele num: 7313
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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QD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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VQSLOD
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BaseQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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VQSLOD
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FS
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QD
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DP
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InbreedingCoeff
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6982
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44086
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7425
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.585791309863622e-4
allele num: 6306
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -1.79e-1

VQSLOD
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MQRankSum
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InbreedingCoeff
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SIO_000300: 4.9e-3

QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

African
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allele count: 3
allele frequency: 4.001066951186983e-4
allele num: 7498
num of homozygotes: 0

Other
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allele frequency: 1.821493624772313e-3
allele num: 549
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 2.502502502502502e-4
allele num: 3996
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 11
allele frequency: 1.226857015391479e-3
allele num: 8966
num of homozygotes: 0

European (Non-Finnish)
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allele count: 46
allele frequency: 1.025869759143622e-3
allele num: 44840
num of homozygotes: 1

East Asian
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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VQSLOD
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MQ
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.191684748065838e-5
allele num: 45627
num of homozygotes: 0

European (Finnish)
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allele count: 0
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Latino
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allele count: 0
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African
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Other
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ClippingRankSum
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SIO_000300: -1.01e0

FS
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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African
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MQRankSum
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MQ
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QD
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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FS
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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South Asian
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InbreedingCoeff
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FS
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DP
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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African
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East Asian
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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East Asian
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BaseQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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DP
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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South Asian
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European (Finnish)
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Latino
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Other
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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East Asian
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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DP
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QD
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European (Non-Finnish)
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East Asian
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African
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 674
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GenotypeQuality
all individuals: 509
bin: 4.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6899
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.106398672321593e-3
allele num: 5423
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7647
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8151
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3387
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38706
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.017187e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 1.665e1

VQSLOD
type: SiteQuality
SIO_000300: -8.587e-1

FS
type: SiteQuality
SIO_000300: 1.0081e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeDepth
all individuals: 7472
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 94
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variant carriers: 0

GenotypeDepth
all individuals: 14636
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variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 134
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variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
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variant carriers: 0

GenotypeDepth
all individuals: 33
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variant carriers: 0

GenotypeDepth
all individuals: 3520
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variant carriers: 0

GenotypeDepth
all individuals: 13562
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 1968
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 21223
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 549
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variant carriers: 1

GenotypeQuality
all individuals: 209
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8051
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7541
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.629572168608167e-5
allele num: 38029
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5305
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.575e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

DP
type: SiteQuality
SIO_000300: 9.99128e5

GenotypeDepth
all individuals: 46
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 21
bin: 7.25e1
variant carriers: 3

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 3.75e1
variant carriers: 13

GenotypeDepth
all individuals: 13562
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variant carriers: 2

GenotypeDepth
all individuals: 1968
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 4.75e1
variant carriers: 3

GenotypeDepth
all individuals: 94
bin: 5.25e1
variant carriers: 3

GenotypeDepth
all individuals: 18
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 1322
bin: 3.25e1
variant carriers: 7

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 2

GenotypeDepth
all individuals: 14636
bin: 1.25e1
variant carriers: 4

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
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variant carriers: 2

GenotypeDepth
all individuals: 19
bin: 9.75e1
variant carriers: 8

GenotypeDepth
all individuals: 7472
bin: 2.75e1
variant carriers: 12

GenotypeDepth
all individuals: 16998
bin: 2.25e1
variant carriers: 11

GenotypeDepth
all individuals: 3520
bin: 1.75e1
variant carriers: 11

GenotypeDepth
all individuals: 33
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2253
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 1026
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variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2117
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 593
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 21223
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3304
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 21195
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 209
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3002
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 527
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38029
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 6.630420368651372e-4
allele num: 7541
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5305
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3321
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8051
num of homozygotes: 0

African
type: Population
allele count: 79
allele frequency: 1.160058737151248e-2
allele num: 6810
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

DP
type: SiteQuality
SIO_000300: 9.99128e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.575e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

GenotypeDepth
all individuals: 22
bin: 7.25e1
variant carriers: 5

GenotypeDepth
all individuals: 11
bin: 8.25e1
variant carriers: 5

GenotypeDepth
all individuals: 4861
bin: 2.5e0
variant carriers: 8

GenotypeDepth
all individuals: 7
bin: 9.25e1
variant carriers: 5

GenotypeDepth
all individuals: 16709
bin: 7.5e0
variant carriers: 112

GenotypeDepth
all individuals: 6576
bin: 1.75e1
variant carriers: 106

GenotypeDepth
all individuals: 136
bin: 4.75e1
variant carriers: 7

GenotypeDepth
all individuals: 47
bin: 5.75e1
variant carriers: 4

GenotypeDepth
all individuals: 19
bin: 6.75e1
variant carriers: 3

GenotypeDepth
all individuals: 5168
bin: 2.75e1
variant carriers: 44

GenotypeDepth
all individuals: 316
bin: 3.75e1
variant carriers: 12

GenotypeDepth
all individuals: 14424
bin: 1.25e1
variant carriers: 131

GenotypeDepth
all individuals: 206
bin: 4.25e1
variant carriers: 13

GenotypeDepth
all individuals: 1038
bin: 3.25e1
variant carriers: 26

GenotypeDepth
all individuals: 36
bin: 6.25e1
variant carriers: 6

GenotypeDepth
all individuals: 10501
bin: 2.25e1
variant carriers: 71

GenotypeDepth
all individuals: 32
bin: 9.75e1
variant carriers: 22

GenotypeDepth
all individuals: 95
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variant carriers: 12

GenotypeQuality
all individuals: 4323
bin: 3.25e1
variant carriers: 32

GenotypeQuality
all individuals: 3053
bin: 1.75e1
variant carriers: 32

GenotypeQuality
all individuals: 5298
bin: 7.5e0
variant carriers: 12

GenotypeQuality
all individuals: 12293
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 18804
bin: 2.25e1
variant carriers: 54

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 792
bin: 9.75e1
variant carriers: 343

GenotypeQuality
all individuals: 943
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2603
bin: 3.75e1
variant carriers: 27

GenotypeQuality
all individuals: 4225
bin: 2.75e1
variant carriers: 13

GenotypeQuality
all individuals: 2212
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 192
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 621
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 1412
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 431
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 980
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1161
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 306
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 419
bin: 5.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 23
allele frequency: 8.064516129032258e-3
allele num: 2852
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.275713602296284e-3
allele num: 6271
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 343
allele frequency: 1.024982070284485e-2
allele num: 33464
num of homozygotes: 2

Other
type: Population
allele count: 2
allele frequency: 4.53514739229025e-3
allele num: 441
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4639
num of homozygotes: 0

South Asian
type: Population
allele count: 68
allele frequency: 9.087264466123212e-3
allele num: 7483
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 3.316749585406302e-3
allele num: 6633
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.915e-1

DP
type: SiteQuality
SIO_000300: 8.68179e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.992e1

GenotypeDepth
all individuals: 19
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 6889
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variant carriers: 0

GenotypeDepth
all individuals: 5133
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GenotypeDepth
all individuals: 999
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variant carriers: 0

GenotypeDepth
all individuals: 17500
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GenotypeDepth
all individuals: 31
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variant carriers: 0

GenotypeDepth
all individuals: 10
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variant carriers: 0

GenotypeDepth
all individuals: 84
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variant carriers: 0

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeDepth
all individuals: 10319
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variant carriers: 0

GenotypeDepth
all individuals: 133
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variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 13806
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variant carriers: 0

GenotypeDepth
all individuals: 4742
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 302
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variant carriers: 0

GenotypeDepth
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 5608
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variant carriers: 0

GenotypeQuality
all individuals: 365
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variant carriers: 0

GenotypeQuality
all individuals: 429
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variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18839
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
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variant carriers: 0

GenotypeQuality
all individuals: 11840
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4331
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4413
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.35593220338983e-4
allele num: 7375
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6159
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 437
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.851e1

VQSLOD
type: SiteQuality
SIO_000300: -8.258e-1

QD
type: SiteQuality
SIO_000300: 3.471e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.492e5

GenotypeDepth
all individuals: 10309
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variant carriers: 1

GenotypeDepth
all individuals: 5057
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variant carriers: 0

GenotypeDepth
all individuals: 13449
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GenotypeDepth
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GenotypeDepth
all individuals: 10
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GenotypeDepth
all individuals: 18
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GenotypeDepth
all individuals: 12
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variant carriers: 0

GenotypeDepth
all individuals: 132
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variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 1027
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 308
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variant carriers: 0

GenotypeDepth
all individuals: 17925
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 19
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variant carriers: 0

GenotypeDepth
all individuals: 43
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variant carriers: 0

GenotypeDepth
all individuals: 31
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variant carriers: 0

GenotypeDepth
all individuals: 6943
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variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3897
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4395
bin: 2.75e1
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GenotypeQuality
all individuals: 1100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5515
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variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4481
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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South Asian
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East Asian
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MQ
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FS
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QD
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DP
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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MQRankSum
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ReadPosRankSum
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DP
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FS
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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East Asian
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FS
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ReadPosRankSum
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DP
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VQSLOD
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BaseQRankSum
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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VQSLOD
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FS
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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QD
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DP
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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Other
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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DP
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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Other
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East Asian
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African
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South Asian
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VQSLOD
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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South Asian
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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African
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European (Non-Finnish)
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QD
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ClippingRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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European (Finnish)
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African
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Other
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Latino
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East Asian
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European (Non-Finnish)
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4060
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.233987891785626e-5
allele num: 44763
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -6.42e-1

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
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SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

QD
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SIO_000300: 1.33e1

MQRankSum
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SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 1.293108e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8833
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4071
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7515
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.297686e6

QD
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SIO_000300: 2.751e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 7.4e-3

VQSLOD
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SIO_000300: -2.47e-1

FS
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6479
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.146751964278047e-5
allele num: 46582
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

ReadPosRankSum
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SIO_000300: 8.89e-1

BaseQRankSum
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SIO_000300: -9.94e-1

ClippingRankSum
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SIO_000300: 7.05e-1

FS
type: SiteQuality
SIO_000300: 7.65e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.375855e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4276
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele num: 9514
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6479
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.375855e6

InbreedingCoeff
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MQ
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SIO_000300: 6.0e1

VQSLOD
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QD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 7.65e-1

ClippingRankSum
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BaseQRankSum
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SIO_000300: -9.94e-1

ReadPosRankSum
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SIO_000300: 8.89e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele num: 9155
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.553408800749e-4
allele num: 46996
num of homozygotes: 0

African
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Other
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European (Finnish)
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
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allele num: 47229
num of homozygotes: 0

Latino
type: Population
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num of homozygotes: 0

East Asian
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European (Finnish)
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African
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South Asian
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Other
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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DP
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ReadPosRankSum
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.278772378516624e-4
allele num: 7820
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.895255543622465e-4
allele num: 47487
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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BaseQRankSum
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DP
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FS
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VQSLOD
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.944e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.278772378516624e-4
allele num: 7820
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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MQRankSum
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.104775736145314e-5
allele num: 47511
num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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QD
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MQ
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 9867
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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FS
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele num: 6582
num of homozygotes: 0

South Asian
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Other
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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European (Finnish)
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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num of homozygotes: 0

South Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47537
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.006e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 1.416964e6

MQRankSum
type: SiteQuality
SIO_000300: -1.103e0

VQSLOD
type: SiteQuality
SIO_000300: -2.308e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.81e-2

GenotypeDepth
all individuals: 995
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 131
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16947
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2231
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 557
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0