17-45662857-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662857
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662857
    reference: chr 17
allele count: 2
allele frequency: 1.677148846960168e-5
allele num: 119250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.241-9T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*101-9T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.53-9T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.629-9T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.409-9T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.649-9T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3793-9T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.637-9T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433649
  ensembl transcript: ENST00000534691
  gene symbol: NPEPPS
  hgvsc: ENST00000534691.1:c.*115-9T>C
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

17-45662860-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662860
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662860
    reference: chr 17
allele count: 1
allele frequency: 8.347663488989432e-6
allele num: 119794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.637-6T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*101-6T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.53-6T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433649
  ensembl transcript: ENST00000534691
  gene symbol: NPEPPS
  hgvsc: ENST00000534691.1:c.*115-6T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.629-6T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3793-6T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.409-6T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.649-6T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.241-6T>G
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9259
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7289
  bin: 6.75e1
  variant carriers: 0
hgvs: c.649-6T>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-45662883-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662883
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662883
    reference: chr 17
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.666A>G
  hgvsp: ENST00000322157.4:c.666A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.654A>G
  hgvsp: ENST00000530173.1:c.654A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.646A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.426A>G
  hgvsp: ENST00000544660.1:c.426A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.258A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*118A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.70A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3810A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys222Lys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-45662889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662889
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662889
    reference: chr 17
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.660C>T
  hgvsp: ENST00000530173.1:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.264C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.76C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.652C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.432C>T
  hgvsp: ENST00000544660.1:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.672C>T
  hgvsp: ENST00000322157.4:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*124C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3816C>T
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr224Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

17-45662890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662890
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662890
    reference: chr 17
allele count: 12
allele frequency: 9.938052804187233e-5
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.653C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3817C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.673C>T
  hgvsp: ENSP00000320324.4:p.Pro225Ser
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.265C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.433C>T
  hgvsp: ENSP00000442461.1:p.Pro145Ser
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.661C>T
  hgvsp: ENSP00000433287.1:p.Pro221Ser
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.77C>T
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro225Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

17-45662913-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662913
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662913
    reference: chr 17
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.696A>G
  hgvsp: ENST00000322157.4:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.684A>G
  hgvsp: ENST00000530173.1:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3840A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.456A>G
  hgvsp: ENST00000544660.1:c.456A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.100A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*148A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.676A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.288A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu232Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

17-45662923-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662923
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662923
    reference: chr 17
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.706G>T
  hgvsp: ENSP00000320324.4:p.Ala236Ser
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.694G>T
  hgvsp: ENSP00000433287.1:p.Ala232Ser
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*158G>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.298G>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.466G>T
  hgvsp: ENSP00000442461.1:p.Ala156Ser
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.686G>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.110G>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3850G>T
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala236Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

17-45662927-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662927
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662927
    reference: chr 17
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.690G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3854G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.114G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.698G>A
  hgvsp: ENSP00000433287.1:p.Arg233His
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.710G>A
  hgvsp: ENSP00000320324.4:p.Arg237His
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*162G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.470G>A
  hgvsp: ENSP00000442461.1:p.Arg157His
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.302G>A
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6493
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7384
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg237His
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

17-45662944-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662944
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662944
    reference: chr 17
allele count: 40
allele frequency: 3.312409943854651e-4
allele num: 120758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*179A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.727A>G
  hgvsp: ENSP00000320324.4:p.Thr243Ala
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.131A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.487A>G
  hgvsp: ENSP00000442461.1:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.715A>G
  hgvsp: ENSP00000433287.1:p.Thr239Ala
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3871A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.319A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.707A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr243Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

17-45662946-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45662946
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45662946
    reference: chr 17
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.489A>G
  hgvsp: ENST00000544660.1:c.489A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3873A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*181A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.729A>G
  hgvsp: ENST00000322157.4:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.717A>G
  hgvsp: ENST00000530173.1:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.133A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.321A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.709A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr243Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

17-45663009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663009
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663009
    reference: chr 17
allele count: 6
allele frequency: 4.968285775797824e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.780G>A
  hgvsp: ENST00000530173.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*244G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.552G>A
  hgvsp: ENST00000544660.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.384G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.792G>A
  hgvsp: ENST00000322157.4:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.772G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.196G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3936G>A
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val264Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

17-45663015-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663015
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663015
    reference: chr 17
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.202C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.786C>T
  hgvsp: ENST00000530173.1:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.778C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3942C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.390C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.798C>T
  hgvsp: ENST00000322157.4:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*250C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.558C>T
  hgvsp: ENST00000544660.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val266Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

17-45663018-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663018
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663018
    reference: chr 17
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.789T>C
  hgvsp: ENST00000530173.1:c.789T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.205T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3945T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.781T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*253T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.393T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.561T>C
  hgvsp: ENST00000544660.1:c.561T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.801T>C
  hgvsp: ENST00000322157.4:c.801T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg267Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

17-45663043-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663043
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663043
    reference: chr 17
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*278G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.418G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.826G>C
  hgvsp: ENSP00000320324.4:p.Glu276Gln
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.230G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.586G>C
  hgvsp: ENSP00000442461.1:p.Glu196Gln
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.806G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.814G>C
  hgvsp: ENSP00000433287.1:p.Glu272Gln
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3970G>C
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu276Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

17-45663060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663060
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663060
    reference: chr 17
allele count: 4
allele frequency: 3.312794010468429e-5
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3987G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.603G>A
  hgvsp: ENST00000544660.1:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*295G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.823G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.435G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.831G>A
  hgvsp: ENST00000530173.1:c.831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.843G>A
  hgvsp: ENST00000322157.4:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.247G>A
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6537
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala281Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

17-45663073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663073
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663073
    reference: chr 17
allele count: 3
allele frequency: 2.484965955966403e-5
allele num: 120726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.448G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.837+7G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*308G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.829+7G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.609+7G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3993+7G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.849+7G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.260G>A
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6540
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 8.75e1
  variant carriers: 0
hgvs: c.849+7G>A
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-45663102-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663102
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663102
    reference: chr 17
allele count: 1
allele frequency: 8.290636555074699e-6
allele num: 120618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.837+36A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.477A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.849+36A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.609+36A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3993+36A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.829+36A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.289A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.23A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*337A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6533
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

17-45663116-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663116
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663116
    reference: chr 17
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3993+50G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*346+5G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.32+5G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.609+50G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000527824
  gene symbol: NPEPPS
  hgvsc: ENST00000527824.1:n.491G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.849+50G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.829+50G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534727
  gene symbol: NPEPPS
  hgvsc: ENST00000534727.1:n.303G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.837+50G>C
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
hgvs: c.*346+5G>C
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

17-45663467-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663467
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663467
    reference: chr 17
allele count: 6
allele frequency: 1.187648456057007e-3
allele num: 5052
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.850-47T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3994-47T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*347-47T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.830-47T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.610-47T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-264T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.838-47T>C
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-45663475-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663475
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663473
    reference: chr 17
allele count: 1
allele frequency: 2.012882447665056e-4
allele num: 4968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.838-36_838-35delAT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.850-36_850-35delAT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*347-36_*347-35delAT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3994-36_3994-35delAT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.830-36_830-35delAT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-253_33-252delAT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.610-36_610-35delAT
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: CAT
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

17-45663505-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663505
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663504
    reference: chr 17
allele count: 1
allele frequency: 2.053388090349076e-4
allele num: 4870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.610-5delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*347-5delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.3994-5delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.850-5delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.830-5delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-222delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.838-5delT
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7284
  bin: 7.5e0
  variant carriers: 0
hgvs: c.850-5delT
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: CT
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-45663554-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663554
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663554
    reference: chr 17
allele count: 2
allele frequency: 3.800836183960471e-4
allele num: 5262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4034A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.650A>G
  hgvsp: ENSP00000442461.1:p.Asn217Ser
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.41A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.878A>G
  hgvsp: ENSP00000433287.1:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.870A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-177A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.890A>G
  hgvsp: ENSP00000320324.4:p.Asn297Ser
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*387A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10088
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn297Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

17-45663586-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663586
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663586
    reference: chr 17
allele count: 1
allele frequency: 1.8910741301059e-4
allele num: 5288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-145A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.902A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.73A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4066A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.910A>G
  hgvsp: ENSP00000433287.1:p.Ile304Val
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.922A>G
  hgvsp: ENSP00000320324.4:p.Ile308Val
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*419A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.682A>G
  hgvsp: ENSP00000442461.1:p.Ile228Val
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile308Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP

17-45663682-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663682
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663682
    reference: chr 17
allele count: 1
allele frequency: 5.512679162072767e-4
allele num: 1814
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-49A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-49A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-49A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-49A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-49A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-54A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-49A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-49A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-49A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13797
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

17-45663682-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663682
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663682
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-49A>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-49A>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-49A>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-49A>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-49A>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-54A>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-49A>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-49A>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-49A>T
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-45663687-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663687
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663687
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 16700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-44T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-44T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-44T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-44T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-44T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-49T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-44T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-44T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-44T>A
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10968
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4755
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-45663694-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663694
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663694
    reference: chr 17
allele count: 1
allele frequency: 5.751754285056943e-5
allele num: 17386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-37A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-37A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-42A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-37A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-37A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-37A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-37A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-37A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-37A>C
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-45663698-ATATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663698
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663694
    reference: chr 17
allele count: 2
allele frequency: 1.085658451851048e-4
allele num: 18422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-32_927-29delTATC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-37_-34delTATC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-32_947-29delTATC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-32_4091-29delTATC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-32_935-29delTATC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-32_33-29delTATC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-32_*444-29delTATC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-32_98-29delTATC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-32_707-29delTATC
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: ATATC
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

17-45663700-A-ATATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663700
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663704
    reference: chr 17
allele count: 449
allele frequency: 2.589388696655133e-2
allele num: 17340
alternate allele: ATATC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-30_33-29insATCT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-30_*444-29insATCT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-30_947-29insATCT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-30_935-29insATCT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-35_-34insATCT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-30_98-29insATCT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-30_707-29insATCT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-30_927-29insATCT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-30_4091-29insATCT
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 16527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.75e1
  variant carriers: 35
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-45663700-A-ATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663700
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663702
    reference: chr 17
allele count: 324
allele frequency: 1.868512110726643e-2
allele num: 17340
alternate allele: ATC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-30_33-29dupTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-30_98-29dupTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-30_707-29dupTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-30_935-29dupTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.-34_-33insTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-35_-34dupTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-30_947-29dupTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-30_927-29dupTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-30_4091-29dupTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-30_*444-29dupTC
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 16527
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.25e1
  variant carriers: 18
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

17-45663700-ATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663700
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663698
    reference: chr 17
allele count: 60
allele frequency: 3.460207612456748e-3
allele num: 17340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-30_33-29delTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-30_947-29delTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-30_927-29delTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-30_98-29delTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-30_935-29delTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-35_-34delTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-30_*444-29delTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-30_707-29delTC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-30_4091-29delTC
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16527
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13788
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: ATC
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/17-45663700-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663700
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663700
    reference: chr 17
allele count: 61
allele frequency: 3.517877739331027e-3
allele num: 17340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-31A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-31A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-31A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-31A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-31A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-31A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-31A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-31A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-36A>C
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13788
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.75e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/17-45663702-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663702
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663702
    reference: chr 17
allele count: 647
allele frequency: 3.388853970249319e-2
allele num: 19092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.-34C>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.707-29C>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.98-29C>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.-34C>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4091-29C>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.927-29C>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.947-29C>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*444-29C>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.935-29C>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.33-29C>A
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 2.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19192
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.25e1
  variant carriers: 3
num of homozygotes: 13
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-45663749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663749
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663749
    reference: chr 17
allele count: 34
allele frequency: 1.399637740820023e-3
allele num: 24292
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.965G>A
  hgvsp: ENSP00000320324.4:p.Gly322Asp
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.116G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.945G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.725G>A
  hgvsp: ENSP00000442461.1:p.Gly242Asp
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4109G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.14G>A
  hgvsp: ENSP00000435966.1:p.Gly5Asp
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.14G>A
  hgvsp: ENSP00000436733.1:p.Gly5Asp
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.51G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.953G>A
  hgvsp: ENSP00000433287.1:p.Gly318Asp
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*462G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.14G>A
  hgvsp: ENSP00000435639.1:p.Gly5Asp
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18228
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Gly322Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

17-45663785-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663785
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663785
    reference: chr 17
allele count: 1
allele frequency: 3.957261574990107e-5
allele num: 25270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+21C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+21C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+21C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+21C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.29+21C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+21C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+21C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+21C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.152C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+21C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+21C>T
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13201
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-45663790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663790
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663790
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 25046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.157C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.29+26C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+26C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+26C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+26C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+26C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+26C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+26C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+26C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+26C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+26C>T
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30662
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11298
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

17-45663980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663980
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663980
    reference: chr 17
allele count: 1
allele frequency: 7.803964413922273e-5
allele num: 12814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.30-47G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+216G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.347G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+216G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+216G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+216G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+216G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+216G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+216G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.92G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+216G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+216G>A
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-45663981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663981
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663981
    reference: chr 17
allele count: 1
allele frequency: 7.848061528802385e-5
allele num: 12742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.93G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+217G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+217G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+217G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.348G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+217G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+217G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.30-46G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+217G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+217G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+217G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+217G>A
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

17-45663987-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663987
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663987
    reference: chr 17
allele count: 9
allele frequency: 7.202304737516005e-4
allele num: 12496
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+223G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+223G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+223G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.30-40G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+223G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+223G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+223G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+223G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+223G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.99G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.354G>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+223G>C
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

17-45663999-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45663999
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45663999
    reference: chr 17
allele count: 19
allele frequency: 1.575978765759788e-3
allele num: 12056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+235A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+235A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+235A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.111A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+235A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525401
  gene symbol: NPEPPS
  hgvsc: ENST00000525401.1:n.366A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+235A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+235A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+235A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+235A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+235A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.30-28A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 1
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

17-45664075-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664075
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664075
    reference: chr 17
allele count: 1
allele frequency: 9.1441111923921e-5
allele num: 10936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+311A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+311A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.187A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+311A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+311A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+311A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.78A>G
  hgvsp: ENSP00000435966.1:p.Ile26Met
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+311A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+311A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+311A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+311A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile26Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

17-45664112-CATAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664112
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664108
    reference: chr 17
allele count: 3
allele frequency: 2.81214848143982e-4
allele num: 10668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+350_4124+353delTAAA
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.226_229delTAAA
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.117_120delTAAA
  hgvsp: ENSP00000435966.1:p.Lys40IlefsTer30
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+350_*477+353delTAAA
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+350_968+353delTAAA
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+350_29+353delTAAA
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+350_740+353delTAAA
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+350_960+353delTAAA
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+350_980+353delTAAA
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+350_29+353delTAAA
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+350_66+353delTAAA
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys40IlefsTer30
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: CATAA
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

17-45664119-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664119
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664119
    reference: chr 17
allele count: 14
allele frequency: 1.327014218009479e-3
allele num: 10550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.122A>G
  hgvsp: ENSP00000435966.1:p.His41Arg
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+355A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+355A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+355A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+355A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+355A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.231A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+355A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+355A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+355A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+355A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.His41Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

17-45664120-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664120
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664120
    reference: chr 17
allele count: 2
allele frequency: 1.897173211914248e-4
allele num: 10542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*477+356T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.980+356T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.740+356T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4124+356T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.232T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.960+356T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.123T>A
  hgvsp: ENSP00000435966.1:p.His41Gln
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.968+356T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.66+356T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.29+356T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.29+356T>A
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His41Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-45664561-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664561
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664561
    reference: chr 17
allele count: 1
allele frequency: 4.062068405231944e-5
allele num: 24618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.73T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-35T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-87T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-35T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-35T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-35T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.673T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-35T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-35T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-35T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-35T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-35T>G
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26553
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-45664563-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664563
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664563
    reference: chr 17
allele count: 14
allele frequency: 5.447046922418489e-4
allele num: 25702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.675A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.75A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-33A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-33A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-33A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-33A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-33A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-33A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-33A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-85A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-33A>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-33A>C
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20389
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25140
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

17-45664568-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664568
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664568
    reference: chr 17
allele count: 87
allele frequency: 2.979247996712554e-3
allele num: 29202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-28T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-28T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.80T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-28T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-28T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.680T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-28T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-80T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-28T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-28T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-28T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-28T>C
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21468
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22605
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

17-45664573-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664573
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664574
    reference: chr 17
allele count: 1167
allele frequency: 4.019425501136598e-2
allele num: 29034
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.699dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-9dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.99dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-9dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-9dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-9dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-9dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-61dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-9dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-9dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-9dupT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-9dupT
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 2.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 1.25e1
  variant carriers: 522
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 22902
  bin: 7.5e0
  variant carriers: 592
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-45664573-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664573
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664572
    reference: chr 17
allele count: 11610
allele frequency: 3.998760074395536e-1
allele num: 29034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-9delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.699delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-9delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-9delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.99delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-9delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-9delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-9delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-9delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-9delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-61delT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-9delT
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.25e1
  variant carriers: 1167
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 1255
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 1197
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 2.5e0
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 1.25e1
  variant carriers: 3734
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 793
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.75e1
  variant carriers: 1615
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 504
genotype depth: GenotypeDepth
  all individuals: 22902
  bin: 7.5e0
  variant carriers: 3220
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.25e1
  variant carriers: 1072
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 125
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: CT
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

17-45664573-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664573
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664571
    reference: chr 17
allele count: 501
allele frequency: 1.725563132878694e-2
allele num: 29034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-10_30-9delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-10_67-9delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.98_99delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-10_741-9delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.698_699delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-10_*478-9delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-10_969-9delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-62_124-61delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-10_4125-9delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-10_30-9delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-10_961-9delTT
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-10_981-9delTT
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 2.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 22902
  bin: 7.5e0
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 1.25e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: CTT
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

17-45664573-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664573
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664570
    reference: chr 17
allele count: 9
allele frequency: 3.09981401115933e-4
allele num: 29034
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22902
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5326
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28188
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4599
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 6.127450980392157e-4
  allele num: 1632
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 278
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 2
  allele frequency: 1.157407407407407e-3
  allele num: 1728
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 4
  allele frequency: 5.356186395286556e-4
  allele num: 7468
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: CTTT
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

17-45664575-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664575
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664575
    reference: chr 17
allele count: 512
allele frequency: 6.889128094725511e-2
allele num: 7432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-21T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-73T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-21T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-21T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.87T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.687T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-21T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-21T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-21T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-21T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-21T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-21T>C
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 2.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 1.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 20431
  bin: 7.5e0
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 13026
  bin: 1.25e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

17-45664576-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664576
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664576
    reference: chr 17
allele count: 5
allele frequency: 1.239218796470705e-4
allele num: 40348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-20T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-20T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.88T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-20T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-20T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-20T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-20T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-20T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.688T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-20T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-72T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-20T>C
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21875
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13763
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

17-45664577-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664577
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664578
    reference: chr 17
allele count: 1
allele frequency: 1.748251748251748e-5
allele num: 57200
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.89_90insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-19_961-18insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.689_690insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-71_124-70insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-19_*478-18insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-19_969-18insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-19_30-18insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-19_981-18insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-19_30-18insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-19_741-18insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-19_4125-18insC
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-19_67-18insC
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 14205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

17-45664579-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664579
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664579
    reference: chr 17
allele count: 1
allele frequency: 1.676558360996546e-5
allele num: 59646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-17T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-17T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-17T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-69T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-17T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-17T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.91T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-17T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.691T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-17T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-17T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-17T>C
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

17-45664583-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664583
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664583
    reference: chr 17
allele count: 1
allele frequency: 1.645169781521453e-5
allele num: 60784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-13T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-13T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-65T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-13T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-13T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-13T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-13T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.695T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-13T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.95T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-13T>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-13T>G
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15766
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

17-45664587-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664587
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664587
    reference: chr 17
allele count: 4
allele frequency: 6.732646603379788e-5
allele num: 59412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-9T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-9T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-9T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.99T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-9T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-9T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-61T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-9T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-9T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-9T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.699T>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-9T>A
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17880
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20601
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

17-45664593-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664593
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664593
    reference: chr 17
allele count: 5928
allele frequency: 1.116342134006252e-1
allele num: 53102
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.981-3C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4125-3C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.741-3C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.961-3C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.67-3C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.969-3C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.105C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*478-3C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.30-3C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.705C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-55C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.30-3C>T
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.75e1
  variant carriers: 481
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 17117
  bin: 1.25e1
  variant carriers: 1105
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 15812
  bin: 7.5e0
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 2.25e1
  variant carriers: 693
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 1.75e1
  variant carriers: 1231
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 448
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.25e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 647
genotype quality: GenotypeQuality
hgvs: c.981-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

17-45664603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664603
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664603
    reference: chr 17
allele count: 16
allele frequency: 1.873141492425484e-4
allele num: 85418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.115G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.748G>A
  hgvsp: ENSP00000442461.1:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.715G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.988G>A
  hgvsp: ENSP00000320324.4:p.Ala330Thr
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-45G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.976G>A
  hgvsp: ENSP00000433287.1:p.Ala326Thr
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*485G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.37G>A
  hgvsp: ENSP00000436733.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4132G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.37G>A
  hgvsp: ENSP00000435639.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.968G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.74G>A
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15867
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala330Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP

17-45664605-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664605
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664605
    reference: chr 17
allele count: 134
allele frequency: 1.551823972206138e-3
allele num: 86350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.39A>G
  hgvsp: ENST00000530514.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.750A>G
  hgvsp: ENST00000544660.1:c.750A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.978A>G
  hgvsp: ENST00000530173.1:c.978A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.717A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.990A>G
  hgvsp: ENST00000322157.4:c.990A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.970A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4134A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.39A>G
  hgvsp: ENST00000527964.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*487A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.76A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.117A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-43A>G
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16267
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15570
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 1.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 2.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala330Ala
num of homozygotes: 2
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

17-45664628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664628
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664628
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 95682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.993C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*510C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.1013C>T
  hgvsp: ENSP00000320324.4:p.Ser338Phe
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4157C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.773C>T
  hgvsp: ENSP00000442461.1:p.Ser258Phe
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.1001C>T
  hgvsp: ENSP00000433287.1:p.Ser334Phe
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-20C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.740C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.62C>T
  hgvsp: ENSP00000436733.1:p.Ser21Phe
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.62C>T
  hgvsp: ENSP00000435639.1:p.Ser21Phe
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.140C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.99C>T
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser338Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

17-45664634-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664634
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664634
    reference: chr 17
allele count: 1
allele frequency: 1.019326429095654e-5
allele num: 98104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.1007C>G
  hgvsp: ENSP00000433287.1:p.Ser336Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.999C>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-14C>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.779C>G
  hgvsp: ENSP00000442461.1:p.Ser260Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.105C>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.1019C>G
  hgvsp: ENSP00000320324.4:p.Ser340Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.146C>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*516C>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.68C>G
  hgvsp: ENSP00000435639.1:p.Ser23Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4163C>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.68C>G
  hgvsp: ENSP00000436733.1:p.Ser23Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.746C>G
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser340Cys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-45664635-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664635
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664635
    reference: chr 17
allele count: 1
allele frequency: 1.011510995124517e-5
allele num: 98862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.69T>C
  hgvsp: ENST00000527964.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.69T>C
  hgvsp: ENST00000530514.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.1008T>C
  hgvsp: ENST00000530173.1:c.1008T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*517T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.1020T>C
  hgvsp: ENST00000322157.4:c.1020T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.106T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.1000T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.147T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.780T>C
  hgvsp: ENST00000544660.1:c.780T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.747T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4164T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-13T>C
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser340Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

17-45664642-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664642
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664642
    reference: chr 17
allele count: 2
allele frequency: 1.932852697295939e-5
allele num: 103474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-6C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.754C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*524C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.76C>T
  hgvsp: ENSP00000435639.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.76C>T
  hgvsp: ENSP00000436733.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4171C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.1027C>T
  hgvsp: ENSP00000320324.4:p.Arg343Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.787C>T
  hgvsp: ENSP00000442461.1:p.Arg263Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.113C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.1015C>T
  hgvsp: ENSP00000433287.1:p.Arg339Cys
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.154C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.1007C>T
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg343Cys
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

17-45664643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664643
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664643
    reference: chr 17
allele count: 3
allele frequency: 2.881456864590737e-5
allele num: 104114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-5G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.77G>A
  hgvsp: ENSP00000435639.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.114G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.788G>A
  hgvsp: ENSP00000442461.1:p.Arg263His
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*525G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.1008G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4172G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.77G>A
  hgvsp: ENSP00000436733.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.155G>A
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.1028G>A
  hgvsp: ENSP00000320324.4:p.Arg343His
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.1016G>A
  hgvsp: ENSP00000433287.1:p.Arg339His
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.755G>A
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30779
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg343His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

17-45664644-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664644
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664644
    reference: chr 17
allele count: 5
allele frequency: 4.772814051164567e-5
allele num: 104760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.156C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.78C>T
  hgvsp: ENST00000530514.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.115C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.756C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4173C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.78C>T
  hgvsp: ENST00000527964.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.1029C>T
  hgvsp: ENST00000322157.4:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124-4C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.1009C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.789C>T
  hgvsp: ENST00000544660.1:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.1017C>T
  hgvsp: ENST00000530173.1:c.1017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*526C>T
  variant of: http://identifiers.org/hgnc/7900
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31231
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.124-4C>T
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-45664648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664648
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664648
    reference: chr 17
allele count: 1
allele frequency: 9.489466691971911e-6
allele num: 105380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*530T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.793T>C
  hgvsp: ENSP00000442461.1:p.Trp265Arg
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.124T>C
  hgvsp: ENSP00000435966.1:p.Trp42Arg
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.1021T>C
  hgvsp: ENSP00000433287.1:p.Trp341Arg
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.82T>C
  hgvsp: ENSP00000435639.1:p.Trp28Arg
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.760T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.119T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.1033T>C
  hgvsp: ENSP00000320324.4:p.Trp345Arg
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.82T>C
  hgvsp: ENSP00000436733.1:p.Trp28Arg
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4177T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.160T>C
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.1013T>C
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30839
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp345Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

17-45664677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664677
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664677
    reference: chr 17
allele count: 2341
allele frequency: 2.632466714645556e-2
allele num: 88928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.822C>T
  hgvsp: ENST00000544660.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.789C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.148C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.189C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.153C>T
  hgvsp: ENST00000527360.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.1062C>T
  hgvsp: ENST00000322157.4:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4206C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.1050C>T
  hgvsp: ENST00000530173.1:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.1042C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.111C>T
  hgvsp: ENST00000530514.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*559C>T
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.111C>T
  hgvsp: ENST00000527964.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 1.75e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 2.75e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 3.25e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 1.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 18326
  bin: 2.25e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
hgvs: p.Leu354Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

17-45664686-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45664686
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 45664686
    reference: chr 17
allele count: 290
allele frequency: 2.911997429409166e-3
allele num: 99588
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000320324
  ensembl transcript: ENST00000322157
  gene symbol: NPEPPS
  hgvsc: ENST00000322157.4:c.1071A>G
  hgvsp: ENST00000322157.4:c.1071A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000533538
  gene symbol: NPEPPS
  hgvsc: ENST00000533538.1:n.798A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435966
  ensembl transcript: ENST00000527360
  gene symbol: NPEPPS
  hgvsc: ENST00000527360.1:c.162A>G
  hgvsp: ENST00000527360.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000534814
  gene symbol: NPEPPS
  hgvsc: ENST00000534814.1:n.157A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000436733
  ensembl transcript: ENST00000530514
  gene symbol: NPEPPS
  hgvsc: ENST00000530514.1:c.120A>G
  hgvsp: ENST00000530514.1:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000442461
  ensembl transcript: ENST00000544660
  gene symbol: NPEPPS
  hgvsc: ENST00000544660.1:c.831A>G
  hgvsp: ENST00000544660.1:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525021
  gene symbol: NPEPPS
  hgvsc: ENST00000525021.1:n.198A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000433287
  ensembl transcript: ENST00000530173
  gene symbol: NPEPPS
  hgvsc: ENST00000530173.1:c.1059A>G
  hgvsp: ENST00000530173.1:c.1059A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000434585
  ensembl transcript: ENST00000527298
  gene symbol: NPEPPS
  hgvsc: ENST00000527298.1:c.*568A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000602788
  gene symbol: NPEPPS
  hgvsc: ENST00000602788.1:n.4215A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141279
  ensembl transcript: ENST00000525037
  gene symbol: NPEPPS
  hgvsc: ENST00000525037.1:n.1051A>G
  variant of: http://identifiers.org/hgnc/7900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141279
  ensembl protein: ENSP00000435639
  ensembl transcript: ENST00000527964
  gene symbol: NPEPPS
  hgvsc: ENST00000527964.1:c.120A>G
  hgvsp: ENST00000527964.1:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13209
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 15812
  bin: 2.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 11444
  bin: 2.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 3
hgvs: p.Gln357Gln
num of homozygotes: 4
reference allele: A

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6408
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7228
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21580547112462e-4
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.4e0

MQRankSum
type: SiteQuality
SIO_000300: 2.79e0

MQ
type: SiteQuality
SIO_000300: 5.544e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.628472e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.301e1

VQSLOD
type: SiteQuality
SIO_000300: -1.619e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

GenotypeQuality
all individuals: 2032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6441
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.634849e6

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.359e1

VQSLOD
type: SiteQuality
SIO_000300: -1.139e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.468e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

QD
type: SiteQuality
SIO_000300: 1.038e1

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37079
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

DP
type: SiteQuality
SIO_000300: 1.646159e6

FS
type: SiteQuality
SIO_000300: 3.406e0

MQ
type: SiteQuality
SIO_000300: 5.163e1

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.84e1

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6480
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.476e0

VQSLOD
type: SiteQuality
SIO_000300: -1.026e0

MQ
type: SiteQuality
SIO_000300: 5.213e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.397e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 1.646401e6

GenotypeQuality
all individuals: 2870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6491
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1012
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7381
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.037703216879972e-3
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

VQSLOD
type: SiteQuality
SIO_000300: -1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 5.357e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

FS
type: SiteQuality
SIO_000300: 2.488e0

DP
type: SiteQuality
SIO_000300: 1.647194e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

MQ
type: SiteQuality
SIO_000300: 5.599e1

FS
type: SiteQuality
SIO_000300: 6.811e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.375e0

QD
type: SiteQuality
SIO_000300: 1.565e1

DP
type: SiteQuality
SIO_000300: 1.64755e6

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.622e0

DP
type: SiteQuality
SIO_000300: 1.647666e6

VQSLOD
type: SiteQuality
SIO_000300: -3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 6.888e0

MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

MQ
type: SiteQuality
SIO_000300: 5.405e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 1013
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.65e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

DP
type: SiteQuality
SIO_000300: 1.647837e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.109e0

FS
type: SiteQuality
SIO_000300: 2.1008e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

GenotypeQuality
all individuals: 7374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6527
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 2180
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 36
allele frequency: 3.673469387755102e-3
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.457814661134163e-4
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.653143e6

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-1

MQ
type: SiteQuality
SIO_000300: 5.804e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

QD
type: SiteQuality
SIO_000300: 1.58e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.67e0

GenotypeQuality
all individuals: 2060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1014
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variant carriers: 0

GenotypeQuality
all individuals: 6523
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variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2180
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variant carriers: 0

GenotypeQuality
all individuals: 7378
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

DP
type: SiteQuality
SIO_000300: 1.650316e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

FS
type: SiteQuality
SIO_000300: 1.3674e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.723e1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7374
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 2061
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37068
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6529
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.319281271596407e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.676e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.651315e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.213e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.651e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.415e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.77e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6530
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

VQSLOD
type: SiteQuality
SIO_000300: -1.974e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.650955e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.943e0

FS
type: SiteQuality
SIO_000300: 1.1738e1

MQ
type: SiteQuality
SIO_000300: 5.745e1

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 3.406e0

DP
type: SiteQuality
SIO_000300: 1.650949e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

QD
type: SiteQuality
SIO_000300: 1.226e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.656e1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 37056
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 7378
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 6532
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2182
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.65112e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.091e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.89e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-1

MQ
type: SiteQuality
SIO_000300: 5.824e1

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
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GenotypeQuality
all individuals: 2871
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.651681e6

MQ
type: SiteQuality
SIO_000300: 5.796e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.217e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.669e0

VQSLOD
type: SiteQuality
SIO_000300: -7.882e-1

GenotypeQuality
all individuals: 7368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
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GenotypeQuality
all individuals: 2870
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variant carriers: 0

GenotypeQuality
all individuals: 36951
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 2181
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496942079386017e-5
allele num: 66712
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.627e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.23e1

DP
type: SiteQuality
SIO_000300: 1.650478e6

VQSLOD
type: SiteQuality
SIO_000300: -1.513e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.437e0

MQ
type: SiteQuality
SIO_000300: 5.744e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 1282
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

MQ
type: SiteQuality
SIO_000300: 5.652e1

QD
type: SiteQuality
SIO_000300: 1.674e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.242e-1

DP
type: SiteQuality
SIO_000300: 1.639887e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.89e0

GenotypeQuality
all individuals: 238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 1281
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variant carriers: 0

GenotypeQuality
all individuals: 793
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variant carriers: 0

GenotypeQuality
all individuals: 6534
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 477
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GenotypeQuality
all individuals: 1007
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variant carriers: 0

GenotypeQuality
all individuals: 2053
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 411
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variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.055e0

DP
type: SiteQuality
SIO_000300: 1.636236e6

MQ
type: SiteQuality
SIO_000300: 5.365e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

VQSLOD
type: SiteQuality
SIO_000300: -1.367e0

QD
type: SiteQuality
SIO_000300: 1.4e1

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
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GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 224
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variant carriers: 0

GenotypeQuality
all individuals: 745
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.880733944954129e-3
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3170
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.9259e4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.05e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

MQ
type: SiteQuality
SIO_000300: 3.349e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -2.497e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.47e-2

GenotypeQuality
all individuals: 3252
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 856
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.209242618741977e-4
allele num: 3116
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.01e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 3.336e1

DP
type: SiteQuality
SIO_000300: 7.8932e4

FS
type: SiteQuality
SIO_000300: 5.379e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
all individuals: 66
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 200
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GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.3003300330033e-4
allele num: 3030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.9758e4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.17e1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.87e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.671e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

QD
type: SiteQuality
SIO_000300: 9.5e0

GenotypeQuality
all individuals: 5098
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
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GenotypeQuality
all individuals: 189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.514657980456026e-4
allele num: 3070
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.569999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.24242e5

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

VQSLOD
type: SiteQuality
SIO_000300: -2.969e0

MQ
type: SiteQuality
SIO_000300: 3.283e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

GenotypeQuality
all individuals: 925
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9185
bin: 7.5e0
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GenotypeQuality
all individuals: 21
bin: 8.75e1
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GenotypeQuality
all individuals: 467
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 165
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 197
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variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.324468085106383e-4
allele num: 3008
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

MQ
type: SiteQuality
SIO_000300: 3.219e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.53e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.399e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.741e0

MQRankSum
type: SiteQuality
SIO_000300: 9.74e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.16861e5

GenotypeQuality
all individuals: 267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 7.5e0
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GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.162790697674419e-2
allele num: 86
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.456e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 3.979e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.389e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 2.80817e5

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.979e0

MQ
type: SiteQuality
SIO_000300: 4.456e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 2.80817e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.389e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

GenotypeQuality
all individuals: 450
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 353
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 2.8352e5

VQSLOD
type: SiteQuality
SIO_000300: -4.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.081e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 2.93e1

GenotypeQuality
all individuals: 206
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 829
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variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8503
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variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618646811265782e-4
allele num: 6178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.34e0

DP
type: SiteQuality
SIO_000300: 2.98806e5

FS
type: SiteQuality
SIO_000300: 3.775e0

MQ
type: SiteQuality
SIO_000300: 4.595e1

QD
type: SiteQuality
SIO_000300: 1.994e1

VQSLOD
type: SiteQuality
SIO_000300: -2.966e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.29e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.494e0

GenotypeQuality
all individuals: 1051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2933
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GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11938
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GenotypeQuality
all individuals: 592
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GenotypeQuality
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 3445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 196
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GenotypeQuality
all individuals: 268
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GenotypeQuality
all individuals: 853
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 436
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.377031120903333e-4
allele num: 7262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.426940639269406e-4
allele num: 7008
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 1.324e0

MQ
type: SiteQuality
SIO_000300: 5.132e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

DP
type: SiteQuality
SIO_000300: 3.25071e5

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 4.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.75e-2

GenotypeQuality
all individuals: 897
bin: 9.75e1
variant carriers: 194

GenotypeQuality
all individuals: 226
bin: 1.75e1
variant carriers: 23

GenotypeQuality
all individuals: 3628
bin: 2.5e0
variant carriers: 23

GenotypeQuality
all individuals: 521
bin: 2.75e1
variant carriers: 21

GenotypeQuality
all individuals: 13788
bin: 7.5e0
variant carriers: 21

GenotypeQuality
all individuals: 364
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 15

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 15

GenotypeQuality
all individuals: 940
bin: 6.75e1
variant carriers: 23

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 3017
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 314
bin: 1.25e1
variant carriers: 17

Other
type: Population
allele count: 7
allele frequency: 3.5e-2
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 4.72636815920398e-2
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 49
allele frequency: 3.566229985443959e-2
allele num: 1374
num of homozygotes: 0

African
type: Population
allele count: 147
allele frequency: 9.233668341708542e-2
allele num: 1592
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 6.206896551724138e-2
allele num: 290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 135
allele frequency: 2.0e-2
allele num: 6750
num of homozygotes: 0

South Asian
type: Population
allele count: 74
allele frequency: 1.099227569815805e-2
allele num: 6732
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.57569e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -2.173e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 2.769e0

MQ
type: SiteQuality
SIO_000300: 5.007e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.202e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.389e-1

QD
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.345e0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1808
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 3628
bin: 2.5e0
variant carriers: 30

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 15

GenotypeQuality
all individuals: 940
bin: 6.75e1
variant carriers: 12

GenotypeQuality
all individuals: 376
bin: 7.25e1
variant carriers: 12

GenotypeQuality
all individuals: 226
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 521
bin: 2.75e1
variant carriers: 19

GenotypeQuality
all individuals: 552
bin: 3.25e1
variant carriers: 17

GenotypeQuality
all individuals: 13788
bin: 7.5e0
variant carriers: 21

GenotypeQuality
all individuals: 3017
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 13

GenotypeQuality
all individuals: 364
bin: 7.75e1
variant carriers: 17

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 897
bin: 9.75e1
variant carriers: 114

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 14

African
type: Population
allele count: 47
allele frequency: 2.952261306532663e-2
allele num: 1592
num of homozygotes: 0

South Asian
type: Population
allele count: 101
allele frequency: 1.500297088532383e-2
allele num: 6732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 109
allele frequency: 1.614814814814815e-2
allele num: 6750
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 2.0e-2
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.741293532338309e-2
allele num: 402
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 3.793103448275862e-2
allele num: 290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 45
allele frequency: 3.275109170305677e-2
allele num: 1374
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -2.173e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.345e0

MQ
type: SiteQuality
SIO_000300: 5.007e1

QD
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 2.769e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.202e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.389e-1

DP
type: SiteQuality
SIO_000300: 3.57569e5

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 248
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 521
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1808
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 226
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 314
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 897
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 225
bin: 8.25e1
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GenotypeQuality
all individuals: 364
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3017
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 7.25e1
variant carriers: 4

South Asian
type: Population
allele count: 41
allele frequency: 6.090314913844325e-3
allele num: 6732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.074074074074074e-3
allele num: 6750
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 7.462686567164179e-3
allele num: 402
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.896551724137931e-3
allele num: 290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.345e0

VQSLOD
type: SiteQuality
SIO_000300: -4.389e-1

MQ
type: SiteQuality
SIO_000300: 5.007e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 2.769e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -2.173e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.202e-1

DP
type: SiteQuality
SIO_000300: 3.57569e5

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1808
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 248
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 552
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3628
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 940
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 376
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 521
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3017
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 2.9708853238265e-3
allele num: 6732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 7.27802037845706e-4
allele num: 1374
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.03448275862069e-2
allele num: 290
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.0e-2
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 5.025125628140704e-3
allele num: 1592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 4.0e-3
allele num: 6750
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.389e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.202e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 2.769e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -2.173e0

MQ
type: SiteQuality
SIO_000300: 5.007e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.345e0

DP
type: SiteQuality
SIO_000300: 3.57569e5

GenotypeQuality
all individuals: 458
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2951
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 399
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1027
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 16515
bin: 7.5e0
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GenotypeQuality
all individuals: 360
bin: 2.75e1
variant carriers: 9

GenotypeQuality
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bin: 9.75e1
variant carriers: 594

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 445
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 1

African
type: Population
allele count: 14
allele frequency: 7.383966244725738e-3
allele num: 1896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 3.311258278145695e-3
allele num: 1510
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 3.181818181818181e-2
allele num: 220
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 3.592814371257485e-2
allele num: 334
num of homozygotes: 0

East Asian
type: Population
allele count: 33
allele frequency: 6.846473029045644e-2
allele num: 482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 185
allele frequency: 2.458145096997077e-2
allele num: 7526
num of homozygotes: 1

South Asian
type: Population
allele count: 391
allele frequency: 5.488489612577204e-2
allele num: 7124
num of homozygotes: 12

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.34e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQ
type: SiteQuality
SIO_000300: 5.215e1

FS
type: SiteQuality
SIO_000300: 2.816e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.155e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 3.72433e5

QD
type: SiteQuality
SIO_000300: 9.23e0

GenotypeDepth
all individuals: 378
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
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variant carriers: 3

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 17411
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 4

GenotypeQuality
all individuals: 23
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 634
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 407
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variant carriers: 1

GenotypeQuality
all individuals: 272
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variant carriers: 2

GenotypeQuality
all individuals: 1135
bin: 9.75e1
variant carriers: 15

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.421307506053269e-3
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 1.31307447008066e-3
allele num: 10662
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 7.413509060955519e-3
allele num: 2428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.61701e5

VQSLOD
type: SiteQuality
SIO_000300: -5.319e0

QD
type: SiteQuality
SIO_000300: 7.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.649e0

FS
type: SiteQuality
SIO_000300: 2.891e0

MQ
type: SiteQuality
SIO_000300: 5.186e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.876e0

MQRankSum
type: SiteQuality
SIO_000300: -3.234e0

GenotypeQuality
all individuals: 1660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 225
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variant carriers: 0

GenotypeQuality
all individuals: 10610
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GenotypeQuality
all individuals: 1176
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6222
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 1902
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GenotypeQuality
all individuals: 1188
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variant carriers: 1

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 1729
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
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GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.885729518393461e-5
allele num: 11254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.66e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.076e0

DP
type: SiteQuality
SIO_000300: 5.3809e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

QD
type: SiteQuality
SIO_000300: 6.98e0

GenotypeQuality
all individuals: 1262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 610
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variant carriers: 0

GenotypeQuality
all individuals: 2543
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 7712
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variant carriers: 0

GenotypeQuality
all individuals: 28560
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1187
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5847
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 409
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variant carriers: 0

GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 647
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 5.22447e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.96e-2

MQ
type: SiteQuality
SIO_000300: 5.344e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.123e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.068e1

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 698
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GenotypeQuality
all individuals: 2179
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GenotypeQuality
all individuals: 395
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GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 657
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GenotypeQuality
all individuals: 112
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variant carriers: 0

GenotypeQuality
all individuals: 3050
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GenotypeQuality
all individuals: 1775
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variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
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GenotypeQuality
all individuals: 459
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GenotypeQuality
all individuals: 687
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variant carriers: 0

GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 385
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 71
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.388503193557345e-4
allele num: 7202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.39551e5

QD
type: SiteQuality
SIO_000300: 1.425e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.327e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

MQ
type: SiteQuality
SIO_000300: 5.793e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.555e0

GenotypeDepth
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 641
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 684
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 395
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GenotypeQuality
all individuals: 771
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 452
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GenotypeQuality
all individuals: 320
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.386962552011096e-4
allele num: 7210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.15e-2

FS
type: SiteQuality
SIO_000300: 3.358e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 4.789e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.256e0

QD
type: SiteQuality
SIO_000300: 1.057e1

DP
type: SiteQuality
SIO_000300: 1.39098e5

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 337
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2160
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GenotypeQuality
all individuals: 2653
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 308
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 9

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.243781094527363e-3
allele num: 7236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-2

MQ
type: SiteQuality
SIO_000300: 4.601e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

BaseQRankSum
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MQRankSum
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SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e-1

DP
type: SiteQuality
SIO_000300: 1.39992e5

VQSLOD
type: SiteQuality
SIO_000300: -1.547e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 82
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
all individuals: 4
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.462686567164179e-3
allele num: 134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

South Asian
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allele count: 18
allele frequency: 2.459688439464335e-3
allele num: 7318
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.349e0

MQ
type: SiteQuality
SIO_000300: 4.573e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

QD
type: SiteQuality
SIO_000300: 1.644e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.43945e5

FS
type: SiteQuality
SIO_000300: 1.201e0

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.329433661260303e-4
allele num: 7522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.37003e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.713e0

QD
type: SiteQuality
SIO_000300: 7.71e0

MQ
type: SiteQuality
SIO_000300: 3.925e1

VQSLOD
type: SiteQuality
SIO_000300: -4.21e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 8.474576271186441e-3
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2674
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.689618074233459e-4
allele num: 7436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

DP
type: SiteQuality
SIO_000300: 1.29989e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

MQ
type: SiteQuality
SIO_000300: 3.063e1

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 8.474576271186441e-3
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.222222222222222e-2
allele num: 90
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.802281368821293e-4
allele num: 2630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.356116083536751e-3
allele num: 7374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.268e0

MQ
type: SiteQuality
SIO_000300: 3.106e1

QD
type: SiteQuality
SIO_000300: 1.163e1

InbreedingCoeff
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SIO_000300: -3.42e-2

FS
type: SiteQuality
SIO_000300: 1.684e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

DP
type: SiteQuality
SIO_000300: 1.26715e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 2.712967986977754e-4
allele num: 7372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2630
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

InbreedingCoeff
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SIO_000300: -3.45e-2

DP
type: SiteQuality
SIO_000300: 1.26596e5

MQ
type: SiteQuality
SIO_000300: 3.133e1

FS
type: SiteQuality
SIO_000300: 3.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.126e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2462
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 9.708737864077669e-4
allele num: 1030
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10486
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.856e1

FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: 7.27e-1

InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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SIO_000300: 7.27e-1

DP
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SIO_000300: 6.20006e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.018e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2046
num of homozygotes: 0

European (Non-Finnish)
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allele count: 14
allele frequency: 1.261715933669791e-3
allele num: 11096
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

QD
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 3.024e0

MQRankSum
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MQ
type: SiteQuality
SIO_000300: 4.956e1

InbreedingCoeff
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SIO_000300: -4.15e-2

DP
type: SiteQuality
SIO_000300: 6.39497e5

ClippingRankSum
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SIO_000300: -3.65e-1

GenotypeDepth
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2681
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 253
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21218
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 522
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3633
bin: 6.25e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 3.866976024748647e-4
allele num: 12930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

African
type: Population
allele count: 78
allele frequency: 2.559055118110236e-2
allele num: 3048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2188
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.747252747252747e-3
allele num: 1456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

DP
type: SiteQuality
SIO_000300: 6.85433e5

MQ
type: SiteQuality
SIO_000300: 4.507e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.737e0

QD
type: SiteQuality
SIO_000300: 6.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 8.59e-1

GenotypeDepth
all individuals: 95
bin: 9.25e1
variant carriers: 13

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 29

GenotypeQuality
all individuals: 926
bin: 1.75e1
variant carriers: 62

GenotypeQuality
all individuals: 779
bin: 7.25e1
variant carriers: 64

GenotypeQuality
all individuals: 5326
bin: 7.5e0
variant carriers: 88

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 28

GenotypeQuality
all individuals: 1114
bin: 3.75e1
variant carriers: 157

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 37

GenotypeQuality
all individuals: 976
bin: 3.25e1
variant carriers: 100

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 43

GenotypeQuality
all individuals: 4599
bin: 9.75e1
variant carriers: 348

GenotypeQuality
all individuals: 712
bin: 6.75e1
variant carriers: 68

GenotypeQuality
all individuals: 1405
bin: 5.25e1
variant carriers: 185

GenotypeQuality
all individuals: 28188
bin: 2.5e0
variant carriers: 43

GenotypeQuality
all individuals: 3990
bin: 2.25e1
variant carriers: 80

GenotypeQuality
all individuals: 1650
bin: 5.75e1
variant carriers: 98

GenotypeQuality
all individuals: 1028
bin: 6.25e1
variant carriers: 89

GenotypeQuality
all individuals: 1184
bin: 4.25e1
variant carriers: 156

GenotypeQuality
all individuals: 812
bin: 2.75e1
variant carriers: 80

GenotypeQuality
all individuals: 1167
bin: 1.25e1
variant carriers: 73

GenotypeQuality
all individuals: 1309
bin: 4.75e1
variant carriers: 151

Other
type: Population
allele count: 6
allele frequency: 2.158273381294964e-2
allele num: 278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 336
allele frequency: 2.596198423736671e-2
allele num: 12942
num of homozygotes: 0

East Asian
type: Population
allele count: 149
allele frequency: 9.129901960784313e-2
allele num: 1632
num of homozygotes: 0

African
type: Population
allele count: 374
allele frequency: 1.191841937539834e-1
allele num: 3138
num of homozygotes: 0

South Asian
type: Population
allele count: 171
allele frequency: 2.289769683985003e-2
allele num: 7468
num of homozygotes: 0

Latino
type: Population
allele count: 113
allele frequency: 6.539351851851852e-2
allele num: 1728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 9.74025974025974e-3
allele num: 1848
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.006e-1

QD
type: SiteQuality
SIO_000300: 2.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

FS
type: SiteQuality
SIO_000300: 2.016e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQ
type: SiteQuality
SIO_000300: 4.932e1

DP
type: SiteQuality
SIO_000300: 9.92993e5

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeDepth
all individuals: 134
bin: 8.25e1
variant carriers: 90

GenotypeQuality
all individuals: 5326
bin: 7.5e0
variant carriers: 305

GenotypeQuality
all individuals: 926
bin: 1.75e1
variant carriers: 378

GenotypeQuality
all individuals: 1114
bin: 3.75e1
variant carriers: 799

GenotypeQuality
all individuals: 976
bin: 3.25e1
variant carriers: 676

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 358

GenotypeQuality
all individuals: 1167
bin: 1.25e1
variant carriers: 434

GenotypeQuality
all individuals: 1184
bin: 4.25e1
variant carriers: 880

GenotypeQuality
all individuals: 28188
bin: 2.5e0
variant carriers: 245

GenotypeQuality
all individuals: 712
bin: 6.75e1
variant carriers: 570

GenotypeQuality
all individuals: 1309
bin: 4.75e1
variant carriers: 1032

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 334

GenotypeQuality
all individuals: 1650
bin: 5.75e1
variant carriers: 1410

GenotypeQuality
all individuals: 812
bin: 2.75e1
variant carriers: 454

GenotypeQuality
all individuals: 3990
bin: 2.25e1
variant carriers: 439

GenotypeQuality
all individuals: 4599
bin: 9.75e1
variant carriers: 4092

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 452

GenotypeQuality
all individuals: 779
bin: 7.25e1
variant carriers: 647

GenotypeQuality
all individuals: 1028
bin: 6.25e1
variant carriers: 823

GenotypeQuality
all individuals: 1405
bin: 5.25e1
variant carriers: 1121

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 600

African
type: Population
allele count: 1003
allele frequency: 3.196303377947737e-1
allele num: 3138
num of homozygotes: 0

Latino
type: Population
allele count: 649
allele frequency: 3.755787037037037e-1
allele num: 1728
num of homozygotes: 0

Other
type: Population
allele count: 107
allele frequency: 3.848920863309352e-1
allele num: 278
num of homozygotes: 0

South Asian
type: Population
allele count: 3294
allele frequency: 4.410819496518479e-1
allele num: 7468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 672
allele frequency: 3.636363636363636e-1
allele num: 1848
num of homozygotes: 0

East Asian
type: Population
allele count: 599
allele frequency: 3.670343137254902e-1
allele num: 1632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5286
allele frequency: 4.084376448771442e-1
allele num: 12942
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 9.92993e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.006e-1

FS
type: SiteQuality
SIO_000300: 2.016e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 2.59e0

MQ
type: SiteQuality
SIO_000300: 4.932e1

GenotypeDepth
all individuals: 334
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 37

GenotypeQuality
all individuals: 3990
bin: 2.25e1
variant carriers: 73

GenotypeQuality
all individuals: 4599
bin: 9.75e1
variant carriers: 71

GenotypeQuality
all individuals: 1028
bin: 6.25e1
variant carriers: 27

GenotypeQuality
all individuals: 812
bin: 2.75e1
variant carriers: 74

GenotypeQuality
all individuals: 976
bin: 3.25e1
variant carriers: 46

GenotypeQuality
all individuals: 926
bin: 1.75e1
variant carriers: 92

GenotypeQuality
all individuals: 28188
bin: 2.5e0
variant carriers: 65

GenotypeQuality
all individuals: 1167
bin: 1.25e1
variant carriers: 107

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 28

GenotypeQuality
all individuals: 712
bin: 6.75e1
variant carriers: 34

GenotypeQuality
all individuals: 1184
bin: 4.25e1
variant carriers: 72

GenotypeQuality
all individuals: 5326
bin: 7.5e0
variant carriers: 110

GenotypeQuality
all individuals: 1114
bin: 3.75e1
variant carriers: 50

GenotypeQuality
all individuals: 1650
bin: 5.75e1
variant carriers: 79

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 46

GenotypeQuality
all individuals: 1405
bin: 5.25e1
variant carriers: 54

GenotypeQuality
all individuals: 1309
bin: 4.75e1
variant carriers: 56

GenotypeQuality
all individuals: 779
bin: 7.25e1
variant carriers: 36

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 18

African
type: Population
allele count: 25
allele frequency: 7.966857871255577e-3
allele num: 3138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 3.246753246753247e-3
allele num: 1848
num of homozygotes: 0

South Asian
type: Population
allele count: 218
allele frequency: 2.919121585431173e-2
allele num: 7468
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 1.798561151079137e-2
allele num: 278
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 4.901960784313725e-3
allele num: 1632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 201
allele frequency: 1.553082985628187e-2
allele num: 12942
num of homozygotes: 0

Latino
type: Population
allele count: 38
allele frequency: 2.199074074074074e-2
allele num: 1728
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 2.016e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.006e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQ
type: SiteQuality
SIO_000300: 4.932e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 2.59e0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

DP
type: SiteQuality
SIO_000300: 9.92993e5

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.726781023025808e-5
allele num: 12942
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.186743148502231e-4
allele num: 3138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1848
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

FS
type: SiteQuality
SIO_000300: 2.016e0

QD
type: SiteQuality
SIO_000300: 2.59e0

MQ
type: SiteQuality
SIO_000300: 4.932e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.006e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

DP
type: SiteQuality
SIO_000300: 9.92993e5

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 273
bin: 3.75e1
variant carriers: 37

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 28

GenotypeQuality
all individuals: 1337
bin: 1.75e1
variant carriers: 53

GenotypeQuality
all individuals: 1198
bin: 1.25e1
variant carriers: 46

GenotypeQuality
all individuals: 370
bin: 9.75e1
variant carriers: 114

GenotypeQuality
all individuals: 546
bin: 2.75e1
variant carriers: 34

GenotypeQuality
all individuals: 75
bin: 8.25e1
variant carriers: 19

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 50

GenotypeQuality
all individuals: 37190
bin: 2.5e0
variant carriers: 43

GenotypeQuality
all individuals: 3601
bin: 2.25e1
variant carriers: 53

GenotypeQuality
all individuals: 4937
bin: 7.5e0
variant carriers: 62

GenotypeQuality
all individuals: 108
bin: 7.75e1
variant carriers: 45

GenotypeQuality
all individuals: 257
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 111
bin: 7.25e1
variant carriers: 30

GenotypeQuality
all individuals: 46
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 27

GenotypeQuality
all individuals: 424
bin: 3.25e1
variant carriers: 41

GenotypeQuality
all individuals: 150
bin: 6.75e1
variant carriers: 27

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 42

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 46

European (Finnish)
type: Population
allele count: 11
allele frequency: 2.736318407960199e-2
allele num: 402
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.681818181818182e-3
allele num: 528
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 8.375634517766498e-2
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 270
allele frequency: 7.718696397941681e-2
allele num: 3498
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 3.114186851211072e-2
allele num: 1156
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 6.060606060606061e-2
allele num: 66
num of homozygotes: 0

South Asian
type: Population
allele count: 155
allele frequency: 1.11671469740634e-1
allele num: 1388
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 7.72251e5

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 4.823e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.456e1

GenotypeDepth
all individuals: 4281
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3236
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3442
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 369
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2189
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11835
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 4801
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 14155
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7800
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 606
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 313
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.715340522685319e-5
allele num: 20586
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.952569169960474e-4
allele num: 5060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3036
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.05761316872428e-4
allele num: 4860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.02e-1

MQ
type: SiteQuality
SIO_000300: 4.904e1

DP
type: SiteQuality
SIO_000300: 8.93193e5

FS
type: SiteQuality
SIO_000300: 1.6256e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeDepth
all individuals: 1214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4318
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7916
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5410
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3826
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.613695765812859e-4
allele num: 3826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.0e0

MQ
type: SiteQuality
SIO_000300: 4.856e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.155e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.53e-2

DP
type: SiteQuality
SIO_000300: 1.005729e6

FS
type: SiteQuality
SIO_000300: 3.871e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

GenotypeDepth
all individuals: 126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

South Asian
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allele num: 10188
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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MQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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SIO_000300: -1.42e-2

ClippingRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.282132072994617e-5
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num of homozygotes: 0

African
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East Asian
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South Asian
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MQ
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SIO_000300: 4.21e1

InbreedingCoeff
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ClippingRankSum
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FS
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QD
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 29812
num of homozygotes: 0

European (Finnish)
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South Asian
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allele frequency: 1.997602876548142e-4
allele num: 10012
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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MQ
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 471
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variant carriers: 252

European (Non-Finnish)
type: Population
allele count: 1956
allele frequency: 6.998211091234346e-2
allele num: 27950
num of homozygotes: 0

African
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allele count: 1272
allele frequency: 2.287769784172662e-1
allele num: 5560
num of homozygotes: 0

East Asian
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allele frequency: 7.566684812193794e-2
allele num: 3674
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South Asian
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allele count: 1719
allele frequency: 2.08667152221413e-1
allele num: 8238
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European (Finnish)
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allele count: 57
allele frequency: 1.552287581699346e-2
allele num: 3672
num of homozygotes: 0

Latino
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allele count: 601
allele frequency: 1.685361749859787e-1
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Other
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allele frequency: 1.018099547511312e-1
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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DP
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ClippingRankSum
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SIO_000300: -1.335e0

MQ
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InbreedingCoeff
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SIO_000300: -1.213e-1

FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.280081925243216e-4
allele num: 7812
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 2.439673527324343e-4
allele num: 45088
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Other
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allele count: 0
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South Asian
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allele frequency: 3.270111183780249e-4
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 2.550369803621525e-4
allele num: 7842
num of homozygotes: 0

East Asian
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South Asian
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Other
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African
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allele count: 131
allele frequency: 1.544082979726544e-2
allele num: 8484
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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African
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European (Finnish)
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Other
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South Asian
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East Asian
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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QD
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DP
type: SiteQuality
SIO_000300: 1.35496e6

GenotypeDepth
all individuals: 262
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1223
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12497
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26988
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4289
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.459346561241235e-5
allele num: 13406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9066
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.398922e6

FS
type: SiteQuality
SIO_000300: 8.323e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.457e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 3.988e1

VQSLOD
type: SiteQuality
SIO_000300: -3.242e0

QD
type: SiteQuality
SIO_000300: 7.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

GenotypeDepth
all individuals: 554
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 466
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4289
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 632
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.091226538629419e-4
allele num: 9164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13466
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.945e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.9e0

MQ
type: SiteQuality
SIO_000300: 3.849e1

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

FS
type: SiteQuality
SIO_000300: 2.363e0

DP
type: SiteQuality
SIO_000300: 1.406419e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

QD
type: SiteQuality
SIO_000300: 7.04e0

GenotypeDepth
all individuals: 198
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1223
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9657
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4297
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.542079909322754e-5
allele num: 56464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.337e1

VQSLOD
type: SiteQuality
SIO_000300: -1.257e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 6.84e0

FS
type: SiteQuality
SIO_000300: 1.622e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

DP
type: SiteQuality
SIO_000300: 1.478113e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

GenotypeDepth
all individuals: 250
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1223
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35428
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1404
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 524
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.758953071132062e-5
allele num: 56852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.089087344805053e-4
allele num: 9182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.030502885408079e-4
allele num: 9704
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 4.206e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

DP
type: SiteQuality
SIO_000300: 1.488144e6

FS
type: SiteQuality
SIO_000300: 9.91e-1

QD
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
SIO_000300: -3.258e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

GenotypeDepth
all individuals: 7865
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 163
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1223
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4305
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.729964730942487e-5
allele num: 57274
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.492409e6

VQSLOD
type: SiteQuality
SIO_000300: -2.588e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.148e0

MQ
type: SiteQuality
SIO_000300: 4.108e1

MQRankSum
type: SiteQuality
SIO_000300: -1.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 7.39e0

GenotypeDepth
all individuals: 163
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3639
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.734785927416557e-5
allele num: 57644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.13e-1

QD
type: SiteQuality
SIO_000300: 3.18e0

DP
type: SiteQuality
SIO_000300: 1.498956e6

VQSLOD
type: SiteQuality
SIO_000300: -3.94e0

FS
type: SiteQuality
SIO_000300: 7.968e0

MQRankSum
type: SiteQuality
SIO_000300: -1.426e0

MQ
type: SiteQuality
SIO_000300: 3.867e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

GenotypeDepth
all individuals: 356
bin: 6.25e1
variant carriers: 78

GenotypeDepth
all individuals: 370
bin: 5.25e1
variant carriers: 65

GenotypeDepth
all individuals: 349
bin: 6.75e1
variant carriers: 77

GenotypeQuality
all individuals: 5005
bin: 2.5e0
variant carriers: 28

GenotypeQuality
all individuals: 1390
bin: 7.5e0
variant carriers: 57

GenotypeQuality
all individuals: 1459
bin: 1.25e1
variant carriers: 99

GenotypeQuality
all individuals: 1758
bin: 3.75e1
variant carriers: 216

GenotypeQuality
all individuals: 12590
bin: 2.25e1
variant carriers: 225

GenotypeQuality
all individuals: 1345
bin: 5.25e1
variant carriers: 127

GenotypeQuality
all individuals: 1629
bin: 3.25e1
variant carriers: 180

GenotypeQuality
all individuals: 1605
bin: 2.75e1
variant carriers: 208

GenotypeQuality
all individuals: 2760
bin: 9.75e1
variant carriers: 455

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 50

GenotypeQuality
all individuals: 479
bin: 7.25e1
variant carriers: 76

GenotypeQuality
all individuals: 2002
bin: 6.75e1
variant carriers: 103

GenotypeQuality
all individuals: 1531
bin: 4.25e1
variant carriers: 183

GenotypeQuality
all individuals: 1462
bin: 4.75e1
variant carriers: 153

GenotypeQuality
all individuals: 1661
bin: 1.75e1
variant carriers: 147

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 58

GenotypeQuality
all individuals: 21494
bin: 6.25e1
variant carriers: 80

GenotypeQuality
all individuals: 416
bin: 7.75e1
variant carriers: 74

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 47

GenotypeQuality
all individuals: 1201
bin: 5.75e1
variant carriers: 107

African
type: Population
allele count: 676
allele frequency: 9.177301113222916e-2
allele num: 7366
num of homozygotes: 0

East Asian
type: Population
allele count: 93
allele frequency: 1.38187221396731e-2
allele num: 6730
num of homozygotes: 0

South Asian
type: Population
allele count: 583
allele frequency: 5.023263829053937e-2
allele num: 11606
num of homozygotes: 0

Latino
type: Population
allele count: 336
allele frequency: 4.54914703493095e-2
allele num: 7386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 611
allele frequency: 1.227548519307269e-2
allele num: 49774
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 2.571428571428571e-2
allele num: 700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 24
allele frequency: 4.472605292582929e-3
allele num: 5366
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.144e1

MQRankSum
type: SiteQuality
SIO_000300: -1.165e0

FS
type: SiteQuality
SIO_000300: 3.671e1

QD
type: SiteQuality
SIO_000300: 9.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.665023e6

VQSLOD
type: SiteQuality
SIO_000300: -8.294e0

GenotypeDepth
all individuals: 957
bin: 3.75e1
variant carriers: 16