19-43025700-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43025700
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43025700
    reference: chr 19
allele count: 1
allele frequency: 8.514551368288405e-6
allele num: 117446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.799-27C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-444G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.704-27C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.704-27C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.799-27C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5493C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.704-27C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96344G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.704-27C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.779-27C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.704-27C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.584-27C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36325G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.704-27C>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

19-43025707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43025707
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43025707
    reference: chr 19
allele count: 1
allele frequency: 8.573829243616784e-6
allele num: 116634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.704-34G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.799-34G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36332C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.799-34G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.704-34G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.584-34G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.704-34G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5486G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.779-34G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96351C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.704-34G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.704-34G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-437C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.704-34G>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

19-43025708-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43025708
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43025708
    reference: chr 19
allele count: 1
allele frequency: 8.576476440419219e-6
allele num: 116598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.704-35T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.704-35T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36333A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.704-35T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.704-35T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5485T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.704-35T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.799-35T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96352A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.584-35T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.779-35T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-436A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.704-35T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.799-35T>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38139
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-43025710-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43025710
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43025710
    reference: chr 19
allele count: 1
allele frequency: 8.59017970655946e-6
allele num: 116412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.779-37G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.799-37G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.704-37G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.704-37G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.704-37G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.704-37G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96354C>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5483G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36335C>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.584-37G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.704-37G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-434C>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.799-37G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.704-37G>T
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-43026026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026026
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026026
    reference: chr 19
allele count: 7
allele frequency: 5.773576813315517e-5
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.703+50G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-118C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36651C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.703+50G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.703+50G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.798+50G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96670C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.798+50G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.778+50G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.703+50G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.703+50G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.703+50G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5167G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.583+50G>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

19-43026027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026027
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026027
    reference: chr 19
allele count: 4
allele frequency: 3.298370604921169e-5
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-117G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.798+49C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.703+49C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.703+49C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.703+49C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.703+49C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36652G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5166C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96671G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.778+49C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.583+49C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.798+49C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.703+49C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.703+49C>T
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

19-43026027-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026027
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026027
    reference: chr 19
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.703+49C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.583+49C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5166C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.798+49C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96671G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.703+49C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.798+49C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.778+49C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.703+49C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.703+49C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36652G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-117G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.703+49C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.703+49C>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

19-43026031-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026031
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026031
    reference: chr 19
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.778+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.798+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36656A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.703+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.703+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.703+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.703+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.703+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5162T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.583+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96675A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.703+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.798+45T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-113A>T
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31389
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-43026041-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026041
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026041
    reference: chr 19
allele count: 2
allele frequency: 1.648804616652927e-5
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.798+35C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.703+35C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.703+35C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.583+35C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-103G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.778+35C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96685G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.798+35C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.703+35C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36666G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.703+35C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5152C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.703+35C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.703+35C>T
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

19-43026043-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026043
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026043
    reference: chr 19
allele count: 3
allele frequency: 2.472717681579902e-5
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36668A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.703+33T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.798+33T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.703+33T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.703+33T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.798+33T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-101A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.703+33T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96687A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5150T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.703+33T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.778+33T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.583+33T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.703+33T>C
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

19-43026050-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026050
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026050
    reference: chr 19
allele count: 18
allele frequency: 1.483679525222552e-4
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96694G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.798+26C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.703+26C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.703+26C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.703+26C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.703+26C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5143C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.798+26C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.583+26C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36675G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.778+26C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-94G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.703+26C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.703+26C>T
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31392
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-43026052-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026052
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026052
    reference: chr 19
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.703+24G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.583+24G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96696C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.703+24G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.798+24G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.778+24G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.703+24G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36677C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.703+24G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.798+24G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-92C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5141G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.703+24G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.703+24G>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-43026062-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026062
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026062
    reference: chr 19
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-82C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.703+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.778+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.703+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.703+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.703+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96706C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.798+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.583+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5131G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.703+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.703+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.798+14G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36687C>G
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

19-43026090-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026090
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026090
    reference: chr 19
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36715G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-54G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.569C>A
  hgvsp: ENSP00000312184.4:p.Thr190Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.784C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.689C>A
  hgvsp: ENSP00000351165.2:p.Thr230Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.689C>A
  hgvsp: ENSP00000384709.3:p.Thr230Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96734G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.784C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.689C>A
  hgvsp: ENSP00000161559.6:p.Thr230Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.689C>A
  hgvsp: ENSP00000471918.1:p.Thr230Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.764C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.689C>A
  hgvsp: ENSP00000384083.1:p.Thr230Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.689C>A
  hgvsp: ENSP00000244291.6:p.Thr230Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5103C>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31391
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr230Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

19-43026099-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026099
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026099
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.560A>G
  hgvsp: ENSP00000312184.4:p.Asp187Gly
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.680A>G
  hgvsp: ENSP00000351165.2:p.Asp227Gly
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.755A>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.680A>G
  hgvsp: ENSP00000471918.1:p.Asp227Gly
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.680A>G
  hgvsp: ENSP00000384083.1:p.Asp227Gly
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36724T>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-45T>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96743T>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.680A>G
  hgvsp: ENSP00000244291.6:p.Asp227Gly
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.680A>G
  hgvsp: ENSP00000384709.3:p.Asp227Gly
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5094A>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.680A>G
  hgvsp: ENSP00000161559.6:p.Asp227Gly
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.775A>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.775A>G
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp227Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/19-43026101-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026101
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026101
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.678T>G
  hgvsp: ENSP00000161559.6:p.Ser226Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.678T>G
  hgvsp: ENSP00000351165.2:p.Ser226Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.773T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.678T>G
  hgvsp: ENSP00000384083.1:p.Ser226Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.678T>G
  hgvsp: ENSP00000244291.6:p.Ser226Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.558T>G
  hgvsp: ENSP00000312184.4:p.Ser186Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.773T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-43A>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.678T>G
  hgvsp: ENSP00000471918.1:p.Ser226Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.678T>G
  hgvsp: ENSP00000384709.3:p.Ser226Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36726A>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96745A>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.753T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5092T>G
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser226Arg
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

19-43026105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026105
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026105
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.674G>A
  hgvsp: ENSP00000384083.1:p.Arg225His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.674G>A
  hgvsp: ENSP00000351165.2:p.Arg225His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.674G>A
  hgvsp: ENSP00000471918.1:p.Arg225His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.674G>A
  hgvsp: ENSP00000384709.3:p.Arg225His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.674G>A
  hgvsp: ENSP00000244291.6:p.Arg225His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.749G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.769G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96749C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36730C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.554G>A
  hgvsp: ENSP00000312184.4:p.Arg185His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-39C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5088G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.674G>A
  hgvsp: ENSP00000161559.6:p.Arg225His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.769G>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg225His
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-43026110-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026110
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026110
    reference: chr 19
allele count: 29
allele frequency: 2.388561262478173e-4
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.669G>A
  hgvsp: ENST00000403444.3:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.669G>A
  hgvsp: ENST00000599389.1:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.669G>A
  hgvsp: ENST00000358394.3:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.669G>A
  hgvsp: ENST00000403461.1:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.744G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.764G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.669G>A
  hgvsp: ENST00000161559.6:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.669G>A
  hgvsp: ENST00000352591.5:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5083G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.549G>A
  hgvsp: ENST00000308072.4:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.764G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36735C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96754C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-34C>T
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala223Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

19-43026111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026111
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026111
    reference: chr 19
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.668C>T
  hgvsp: ENSP00000384083.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.743C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.668C>T
  hgvsp: ENSP00000351165.2:p.Ala223Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36736G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.668C>T
  hgvsp: ENSP00000244291.6:p.Ala223Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.763C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.668C>T
  hgvsp: ENSP00000471918.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.668C>T
  hgvsp: ENSP00000161559.6:p.Ala223Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96755G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.548C>T
  hgvsp: ENSP00000312184.4:p.Ala183Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.668C>T
  hgvsp: ENSP00000384709.3:p.Ala223Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5082C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.763C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-33G>A
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala223Val
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

19-43026114-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026114
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026114
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.760G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5079G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.665G>C
  hgvsp: ENSP00000244291.6:p.Ser222Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.665G>C
  hgvsp: ENSP00000471918.1:p.Ser222Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.665G>C
  hgvsp: ENSP00000384709.3:p.Ser222Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.545G>C
  hgvsp: ENSP00000312184.4:p.Ser182Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36739C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.740G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96758C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.665G>C
  hgvsp: ENSP00000161559.6:p.Ser222Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.665G>C
  hgvsp: ENSP00000351165.2:p.Ser222Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.760G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.665G>C
  hgvsp: ENSP00000384083.1:p.Ser222Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-30C>G
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser222Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-43026116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026116
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026116
    reference: chr 19
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.663G>A
  hgvsp: ENST00000403461.1:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.663G>A
  hgvsp: ENST00000403444.3:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.738G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-28C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.758G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.543G>A
  hgvsp: ENST00000308072.4:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.758G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.663G>A
  hgvsp: ENST00000352591.5:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.663G>A
  hgvsp: ENST00000358394.3:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.663G>A
  hgvsp: ENST00000599389.1:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96760C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36741C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5077G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.663G>A
  hgvsp: ENST00000161559.6:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31387
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val221Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

19-43026117-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026117
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026117
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.757T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.662T>C
  hgvsp: ENSP00000471918.1:p.Val221Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.662T>C
  hgvsp: ENSP00000351165.2:p.Val221Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.737T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-27A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36742A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.542T>C
  hgvsp: ENSP00000312184.4:p.Val181Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96761A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.662T>C
  hgvsp: ENSP00000384083.1:p.Val221Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.662T>C
  hgvsp: ENSP00000384709.3:p.Val221Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.662T>C
  hgvsp: ENSP00000244291.6:p.Val221Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.757T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5076T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.662T>C
  hgvsp: ENSP00000161559.6:p.Val221Ala
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val221Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

19-43026122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026122
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026122
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.657C>T
  hgvsp: ENST00000403444.3:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.657C>T
  hgvsp: ENST00000352591.5:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5071C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36747G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96766G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.657C>T
  hgvsp: ENST00000358394.3:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.537C>T
  hgvsp: ENST00000308072.4:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.752C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.657C>T
  hgvsp: ENST00000403461.1:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.657C>T
  hgvsp: ENST00000599389.1:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.657C>T
  hgvsp: ENST00000161559.6:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.732C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.752C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-22G>A
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn219Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

19-43026122-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026122
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026122
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.657C>G
  hgvsp: ENSP00000351165.2:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.752C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.657C>G
  hgvsp: ENSP00000244291.6:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.657C>G
  hgvsp: ENSP00000384709.3:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-22G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5071C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.732C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.657C>G
  hgvsp: ENSP00000471918.1:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.537C>G
  hgvsp: ENSP00000312184.4:p.Asn179Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.657C>G
  hgvsp: ENSP00000384083.1:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36747G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.657C>G
  hgvsp: ENSP00000161559.6:p.Asn219Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96766G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.752C>G
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn219Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-43026129-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026129
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026129
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.725T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.650T>C
  hgvsp: ENSP00000244291.6:p.Ile217Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.650T>C
  hgvsp: ENSP00000471918.1:p.Ile217Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.650T>C
  hgvsp: ENSP00000384083.1:p.Ile217Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36754A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.650T>C
  hgvsp: ENSP00000351165.2:p.Ile217Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.650T>C
  hgvsp: ENSP00000384709.3:p.Ile217Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.530T>C
  hgvsp: ENSP00000312184.4:p.Ile177Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.745T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.745T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.650T>C
  hgvsp: ENSP00000161559.6:p.Ile217Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96773A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-15A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5064T>C
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile217Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

19-43026135-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026135
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026135
    reference: chr 19
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.739G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.644G>A
  hgvsp: ENSP00000384083.1:p.Cys215Tyr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.644G>A
  hgvsp: ENSP00000244291.6:p.Cys215Tyr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36760C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.524G>A
  hgvsp: ENSP00000312184.4:p.Cys175Tyr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.739G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.644G>A
  hgvsp: ENSP00000384709.3:p.Cys215Tyr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.644G>A
  hgvsp: ENSP00000471918.1:p.Cys215Tyr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5058G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.644G>A
  hgvsp: ENSP00000351165.2:p.Cys215Tyr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.719G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-9C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.644G>A
  hgvsp: ENSP00000161559.6:p.Cys215Tyr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96779C>T
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31387
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys215Tyr
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-43026141-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026141
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026141
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.713A>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1143-3T>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.638A>G
  hgvsp: ENSP00000384709.3:p.Tyr213Cys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.518A>G
  hgvsp: ENSP00000312184.4:p.Tyr173Cys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.733A>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.638A>G
  hgvsp: ENSP00000351165.2:p.Tyr213Cys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.638A>G
  hgvsp: ENSP00000244291.6:p.Tyr213Cys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.638A>G
  hgvsp: ENSP00000161559.6:p.Tyr213Cys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.638A>G
  hgvsp: ENSP00000471918.1:p.Tyr213Cys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96785T>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.638A>G
  hgvsp: ENSP00000384083.1:p.Tyr213Cys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36766T>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5052A>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.733A>G
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr213Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

19-43026154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026154
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026154
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5039G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.625G>A
  hgvsp: ENSP00000384083.1:p.Asp209Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.505G>A
  hgvsp: ENSP00000312184.4:p.Asp169Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.700G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1153C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.625G>A
  hgvsp: ENSP00000244291.6:p.Asp209Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.720G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.625G>A
  hgvsp: ENSP00000384709.3:p.Asp209Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.625G>A
  hgvsp: ENSP00000351165.2:p.Asp209Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.625G>A
  hgvsp: ENSP00000471918.1:p.Asp209Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36779C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96798C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.625G>A
  hgvsp: ENSP00000161559.6:p.Asp209Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.720G>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp209Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-43026169-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026169
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026169
    reference: chr 19
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.610A>C
  hgvsp: ENSP00000244291.6:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1168T>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.610A>C
  hgvsp: ENSP00000161559.6:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.705A>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.610A>C
  hgvsp: ENSP00000471918.1:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.610A>C
  hgvsp: ENSP00000384083.1:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.490A>C
  hgvsp: ENSP00000312184.4:p.Ser164Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.685A>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5024A>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.705A>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.610A>C
  hgvsp: ENSP00000351165.2:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.610A>C
  hgvsp: ENSP00000384709.3:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96813T>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36794T>G
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31387
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser204Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-43026171-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026171
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026171
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1170A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5022T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36796A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.683T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.608T>A
  hgvsp: ENSP00000161559.6:p.Leu203His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.608T>A
  hgvsp: ENSP00000244291.6:p.Leu203His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.608T>A
  hgvsp: ENSP00000351165.2:p.Leu203His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.608T>A
  hgvsp: ENSP00000471918.1:p.Leu203His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.703T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.608T>A
  hgvsp: ENSP00000384709.3:p.Leu203His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.703T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.608T>A
  hgvsp: ENSP00000384083.1:p.Leu203His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96815A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.488T>A
  hgvsp: ENSP00000312184.4:p.Leu163His
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu203His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-43026176-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026176
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026176
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.603T>C
  hgvsp: ENST00000352591.5:c.603T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.698T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.483T>C
  hgvsp: ENST00000308072.4:c.483T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.603T>C
  hgvsp: ENST00000403444.3:c.603T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.698T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36801A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.603T>C
  hgvsp: ENST00000161559.6:c.603T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.603T>C
  hgvsp: ENST00000403461.1:c.603T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.603T>C
  hgvsp: ENST00000599389.1:c.603T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.678T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5017T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.603T>C
  hgvsp: ENST00000358394.3:c.603T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1175A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96820A>G
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr201Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

19-43026182-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026182
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026182
    reference: chr 19
allele count: 12
allele frequency: 9.883701775771753e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.597C>T
  hgvsp: ENST00000358394.3:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.597C>T
  hgvsp: ENST00000403461.1:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.597C>T
  hgvsp: ENST00000352591.5:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96826G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.597C>T
  hgvsp: ENST00000161559.6:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.477C>T
  hgvsp: ENST00000308072.4:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.672C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1181G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.597C>T
  hgvsp: ENST00000403444.3:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.692C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36807G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5011C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.597C>T
  hgvsp: ENST00000599389.1:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.692C>T
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31393
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr199Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

19-43026183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026183
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026183
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.691C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.476C>T
  hgvsp: ENSP00000312184.4:p.Thr159Ile
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36808G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.596C>T
  hgvsp: ENSP00000351165.2:p.Thr199Ile
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.596C>T
  hgvsp: ENSP00000384083.1:p.Thr199Ile
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96827G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5010C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.671C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.596C>T
  hgvsp: ENSP00000244291.6:p.Thr199Ile
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.596C>T
  hgvsp: ENSP00000384709.3:p.Thr199Ile
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.596C>T
  hgvsp: ENSP00000161559.6:p.Thr199Ile
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.691C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.596C>T
  hgvsp: ENSP00000471918.1:p.Thr199Ile
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1182G>A
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr199Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

19-43026191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026191
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026191
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.663C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.588C>T
  hgvsp: ENST00000599389.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.683C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96835G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36816G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.683C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.588C>T
  hgvsp: ENST00000358394.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.588C>T
  hgvsp: ENST00000403444.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.588C>T
  hgvsp: ENST00000403461.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.468C>T
  hgvsp: ENST00000308072.4:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1190G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.588C>T
  hgvsp: ENST00000352591.5:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5002C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.588C>T
  hgvsp: ENST00000161559.6:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31388
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly196Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-43026192-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026192
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026192
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.587G>T
  hgvsp: ENSP00000471918.1:p.Gly196Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.587G>T
  hgvsp: ENSP00000384083.1:p.Gly196Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.587G>T
  hgvsp: ENSP00000161559.6:p.Gly196Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.662G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.467G>T
  hgvsp: ENSP00000312184.4:p.Gly156Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36817C>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.587G>T
  hgvsp: ENSP00000384709.3:p.Gly196Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.587G>T
  hgvsp: ENSP00000244291.6:p.Gly196Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.682G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1191C>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.587G>T
  hgvsp: ENSP00000351165.2:p.Gly196Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.682G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+5001G>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96836C>A
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly196Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

19-43026195-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026195
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026195
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.679A>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.584A>C
  hgvsp: ENSP00000161559.6:p.Asn195Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.584A>C
  hgvsp: ENSP00000384709.3:p.Asn195Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.584A>C
  hgvsp: ENSP00000471918.1:p.Asn195Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.464A>C
  hgvsp: ENSP00000312184.4:p.Asn155Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.584A>C
  hgvsp: ENSP00000351165.2:p.Asn195Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.659A>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.584A>C
  hgvsp: ENSP00000384083.1:p.Asn195Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.584A>C
  hgvsp: ENSP00000244291.6:p.Asn195Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.679A>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1194T>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4998A>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36820T>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96839T>G
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn195Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-43026201-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026201
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026201
    reference: chr 19
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.578T>G
  hgvsp: ENSP00000384083.1:p.Leu193Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.578T>G
  hgvsp: ENSP00000471918.1:p.Leu193Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.458T>G
  hgvsp: ENSP00000312184.4:p.Leu153Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.578T>G
  hgvsp: ENSP00000244291.6:p.Leu193Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.578T>G
  hgvsp: ENSP00000384709.3:p.Leu193Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.578T>G
  hgvsp: ENSP00000351165.2:p.Leu193Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.673T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.578T>G
  hgvsp: ENSP00000161559.6:p.Leu193Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36826A>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1200A>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96845A>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.653T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4992T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.673T>G
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu193Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-43026206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026206
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026206
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.573G>A
  hgvsp: ENST00000352591.5:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.573G>A
  hgvsp: ENST00000403444.3:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1205C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.573G>A
  hgvsp: ENST00000358394.3:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.668G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36831C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.573G>A
  hgvsp: ENST00000599389.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.648G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.573G>A
  hgvsp: ENST00000403461.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.573G>A
  hgvsp: ENST00000161559.6:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.453G>A
  hgvsp: ENST00000308072.4:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96850C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4987G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.668G>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31389
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu191Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

19-43026208-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026208
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026208
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1207G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36833G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.571C>G
  hgvsp: ENSP00000244291.6:p.Leu191Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.646C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.571C>G
  hgvsp: ENSP00000351165.2:p.Leu191Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.571C>G
  hgvsp: ENSP00000384083.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.571C>G
  hgvsp: ENSP00000384709.3:p.Leu191Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.571C>G
  hgvsp: ENSP00000471918.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96852G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.666C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.666C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4985C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.451C>G
  hgvsp: ENSP00000312184.4:p.Leu151Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.571C>G
  hgvsp: ENSP00000161559.6:p.Leu191Val
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu191Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

19-43026212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026212
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026212
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96856G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.567C>T
  hgvsp: ENST00000352591.5:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.447C>T
  hgvsp: ENST00000308072.4:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.567C>T
  hgvsp: ENST00000403461.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.662C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.567C>T
  hgvsp: ENST00000358394.3:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4981C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.642C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.567C>T
  hgvsp: ENST00000403444.3:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.567C>T
  hgvsp: ENST00000599389.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1211G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.662C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.567C>T
  hgvsp: ENST00000161559.6:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36837G>A
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31388
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro189Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-43026219-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026219
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026219
    reference: chr 19
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96863A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.560T>C
  hgvsp: ENSP00000351165.2:p.Val187Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1218A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.655T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36844A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.635T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.560T>C
  hgvsp: ENSP00000244291.6:p.Val187Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.560T>C
  hgvsp: ENSP00000161559.6:p.Val187Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.655T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.560T>C
  hgvsp: ENSP00000384083.1:p.Val187Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.440T>C
  hgvsp: ENSP00000312184.4:p.Val147Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.560T>C
  hgvsp: ENSP00000384709.3:p.Val187Ala
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4974T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.560T>C
  hgvsp: ENSP00000471918.1:p.Val187Ala
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val187Ala
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-43026221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026221
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026221
    reference: chr 19
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.558G>A
  hgvsp: ENST00000352591.5:c.558G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36846C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.558G>A
  hgvsp: ENST00000403461.1:c.558G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.558G>A
  hgvsp: ENST00000358394.3:c.558G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.653G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.438G>A
  hgvsp: ENST00000308072.4:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.558G>A
  hgvsp: ENST00000403444.3:c.558G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.558G>A
  hgvsp: ENST00000599389.1:c.558G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1220C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.558G>A
  hgvsp: ENST00000161559.6:c.558G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4972G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.633G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.653G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96865C>T
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro186Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

19-43026222-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026222
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026222
    reference: chr 19
allele count: 80
allele frequency: 6.589134517181168e-4
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.437C>A
  hgvsp: ENSP00000312184.4:p.Pro146Gln
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1221G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96866G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.557C>A
  hgvsp: ENSP00000351165.2:p.Pro186Gln
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.652C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.557C>A
  hgvsp: ENSP00000244291.6:p.Pro186Gln
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.557C>A
  hgvsp: ENSP00000161559.6:p.Pro186Gln
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.652C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4971C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.557C>A
  hgvsp: ENSP00000384083.1:p.Pro186Gln
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.557C>A
  hgvsp: ENSP00000384709.3:p.Pro186Gln
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36847G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.632C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.557C>A
  hgvsp: ENSP00000471918.1:p.Pro186Gln
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31402
  bin: 9.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro186Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

19-43026224-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026224
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026224
    reference: chr 19
allele count: 80
allele frequency: 6.589134517181168e-4
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.555C>G
  hgvsp: ENST00000403444.3:c.555C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.435C>G
  hgvsp: ENST00000308072.4:c.435C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.555C>G
  hgvsp: ENST00000599389.1:c.555C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1223G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4969C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.555C>G
  hgvsp: ENST00000352591.5:c.555C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.555C>G
  hgvsp: ENST00000403461.1:c.555C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36849G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.555C>G
  hgvsp: ENST00000358394.3:c.555C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.650C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.555C>G
  hgvsp: ENST00000161559.6:c.555C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.650C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.630C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96868G>C
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu185Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

19-43026225-A-AGCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026225
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026229
    reference: chr 19
allele count: 80
allele frequency: 6.589134517181168e-4
allele num: 121412
alternate allele: AGCCT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.553_554insAGGC
  hgvsp: ENSP00000351165.2:p.Leu185GlnfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36851_179+36852insCCTG
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.553_554insAGGC
  hgvsp: ENSP00000384083.1:p.Leu185GlnfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.553_554insAGGC
  hgvsp: ENSP00000471918.1:p.Leu185GlnfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.648_649insAGGC
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.433_434insAGGC
  hgvsp: ENSP00000312184.4:p.Leu145GlnfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1225_1226insCCTG
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.648_649insAGGC
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96870_1450+96871insCCTG
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.553_554insAGGC
  hgvsp: ENSP00000384709.3:p.Leu185GlnfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.628_629insAGGC
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.553_554insAGGC
  hgvsp: ENSP00000244291.6:p.Leu185GlnfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.553_554insAGGC
  hgvsp: ENSP00000161559.6:p.Leu185GlnfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4967_424+4968insAGGC
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu185GlnfsTer26
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

19-43026225-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026225
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026225
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4968T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.554T>A
  hgvsp: ENSP00000471918.1:p.Leu185His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.629T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.554T>A
  hgvsp: ENSP00000161559.6:p.Leu185His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.554T>A
  hgvsp: ENSP00000351165.2:p.Leu185His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.554T>A
  hgvsp: ENSP00000384083.1:p.Leu185His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.554T>A
  hgvsp: ENSP00000244291.6:p.Leu185His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.554T>A
  hgvsp: ENSP00000384709.3:p.Leu185His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.434T>A
  hgvsp: ENSP00000312184.4:p.Leu145His
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1224A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.649T>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36850A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96869A>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.649T>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu185His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-43026227-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026227
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026227
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96871G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.627C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.647C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.552C>A
  hgvsp: ENSP00000471918.1:p.Ser184Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.552C>A
  hgvsp: ENSP00000351165.2:p.Ser184Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.647C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36852G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.552C>A
  hgvsp: ENSP00000384709.3:p.Ser184Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.552C>A
  hgvsp: ENSP00000384083.1:p.Ser184Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1226G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.432C>A
  hgvsp: ENSP00000312184.4:p.Ser144Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.552C>A
  hgvsp: ENSP00000161559.6:p.Ser184Arg
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4966C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.552C>A
  hgvsp: ENSP00000244291.6:p.Ser184Arg
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31387
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser184Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

19-43026246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026246
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026246
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36871C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.533G>A
  hgvsp: ENSP00000384709.3:p.Trp178Ter
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.628G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96890C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.628G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.413G>A
  hgvsp: ENSP00000312184.4:p.Trp138Ter
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1245C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.533G>A
  hgvsp: ENSP00000384083.1:p.Trp178Ter
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.608G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.533G>A
  hgvsp: ENSP00000471918.1:p.Trp178Ter
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.533G>A
  hgvsp: ENSP00000161559.6:p.Trp178Ter
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4947G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.533G>A
  hgvsp: ENSP00000351165.2:p.Trp178Ter
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.533G>A
  hgvsp: ENSP00000244291.6:p.Trp178Ter
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp178Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

19-43026250-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026250
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026250
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96894G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.529C>G
  hgvsp: ENSP00000244291.6:p.Leu177Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.529C>G
  hgvsp: ENSP00000351165.2:p.Leu177Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.624C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.529C>G
  hgvsp: ENSP00000384709.3:p.Leu177Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.529C>G
  hgvsp: ENSP00000471918.1:p.Leu177Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.409C>G
  hgvsp: ENSP00000312184.4:p.Leu137Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.529C>G
  hgvsp: ENSP00000161559.6:p.Leu177Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.624C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36875G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4943C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.529C>G
  hgvsp: ENSP00000384083.1:p.Leu177Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.604C>G
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu177Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-43026254-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026254
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026254
    reference: chr 19
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36879G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.525C>G
  hgvsp: ENST00000403444.3:c.525C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.620C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.525C>G
  hgvsp: ENST00000403461.1:c.525C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.525C>G
  hgvsp: ENST00000358394.3:c.525C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96898G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.600C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.525C>G
  hgvsp: ENST00000161559.6:c.525C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.525C>G
  hgvsp: ENST00000352591.5:c.525C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+4G>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.405C>G
  hgvsp: ENST00000308072.4:c.405C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4939C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.620C>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.525C>G
  hgvsp: ENST00000599389.1:c.525C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.1249+4G>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-43026255-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026255
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026255
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+5G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.524C>A
  hgvsp: ENSP00000161559.6:p.Thr175Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.619C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.404C>A
  hgvsp: ENSP00000312184.4:p.Thr135Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96899G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.524C>A
  hgvsp: ENSP00000384083.1:p.Thr175Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.524C>A
  hgvsp: ENSP00000384709.3:p.Thr175Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.524C>A
  hgvsp: ENSP00000471918.1:p.Thr175Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4938C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.524C>A
  hgvsp: ENSP00000351165.2:p.Thr175Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36880G>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.524C>A
  hgvsp: ENSP00000244291.6:p.Thr175Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.599C>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.619C>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr175Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

19-43026262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026262
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026262
    reference: chr 19
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.612G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.517G>A
  hgvsp: ENSP00000384083.1:p.Asp173Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.397G>A
  hgvsp: ENSP00000312184.4:p.Asp133Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.517G>A
  hgvsp: ENSP00000244291.6:p.Asp173Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4931G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.517G>A
  hgvsp: ENSP00000384709.3:p.Asp173Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36887C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.517G>A
  hgvsp: ENSP00000471918.1:p.Asp173Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.612G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.517G>A
  hgvsp: ENSP00000161559.6:p.Asp173Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.517G>A
  hgvsp: ENSP00000351165.2:p.Asp173Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96906C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.592G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+12C>T
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31384
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp173Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-43026272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026272
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026272
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.602T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.507T>C
  hgvsp: ENST00000161559.6:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.507T>C
  hgvsp: ENST00000599389.1:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.507T>C
  hgvsp: ENST00000403444.3:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+22A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4921T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36897A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.507T>C
  hgvsp: ENST00000358394.3:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.387T>C
  hgvsp: ENST00000308072.4:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.507T>C
  hgvsp: ENST00000403461.1:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.582T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.507T>C
  hgvsp: ENST00000352591.5:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.602T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96916A>G
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro169Pro
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

19-43026288-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026288
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026288
    reference: chr 19
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.491C>T
  hgvsp: ENSP00000161559.6:p.Ala164Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.491C>T
  hgvsp: ENSP00000384083.1:p.Ala164Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.586C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.491C>T
  hgvsp: ENSP00000244291.6:p.Ala164Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.371C>T
  hgvsp: ENSP00000312184.4:p.Ala124Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36913G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.491C>T
  hgvsp: ENSP00000351165.2:p.Ala164Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.586C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+38G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.566C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.491C>T
  hgvsp: ENSP00000471918.1:p.Ala164Val
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4905C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96932G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.491C>T
  hgvsp: ENSP00000384709.3:p.Ala164Val
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala164Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

19-43026290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026290
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.489G>A
  hgvsp: ENST00000599389.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4903G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.489G>A
  hgvsp: ENST00000403444.3:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.564G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.489G>A
  hgvsp: ENST00000403461.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.489G>A
  hgvsp: ENST00000352591.5:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36915C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.369G>A
  hgvsp: ENST00000308072.4:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+40C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.584G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.489G>A
  hgvsp: ENST00000358394.3:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.489G>A
  hgvsp: ENST00000161559.6:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.584G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96934C>T
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val163Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-43026296-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026296
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026296
    reference: chr 19
allele count: 8
allele frequency: 6.589243060703402e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.578T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.483T>G
  hgvsp: ENSP00000384709.3:p.Asp161Glu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.578T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4897T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.483T>G
  hgvsp: ENSP00000471918.1:p.Asp161Glu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.558T>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36921A>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.483T>G
  hgvsp: ENSP00000351165.2:p.Asp161Glu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.363T>G
  hgvsp: ENSP00000312184.4:p.Asp121Glu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.483T>G
  hgvsp: ENSP00000244291.6:p.Asp161Glu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.483T>G
  hgvsp: ENSP00000384083.1:p.Asp161Glu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.483T>G
  hgvsp: ENSP00000161559.6:p.Asp161Glu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+46A>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96940A>C
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31385
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp161Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

19-43026299-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026299
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026299
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.555G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.480G>C
  hgvsp: ENSP00000351165.2:p.Lys160Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.360G>C
  hgvsp: ENSP00000312184.4:p.Lys120Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.480G>C
  hgvsp: ENSP00000244291.6:p.Lys160Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.480G>C
  hgvsp: ENSP00000161559.6:p.Lys160Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4894G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.480G>C
  hgvsp: ENSP00000384083.1:p.Lys160Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.480G>C
  hgvsp: ENSP00000384709.3:p.Lys160Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+49C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.480G>C
  hgvsp: ENSP00000471918.1:p.Lys160Asn
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96943C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36924C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.575G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.575G>C
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys160Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-43026307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026307
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026307
    reference: chr 19
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36932C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.472G>A
  hgvsp: ENSP00000384083.1:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+57C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.472G>A
  hgvsp: ENSP00000471918.1:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.472G>A
  hgvsp: ENSP00000244291.6:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4886G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.472G>A
  hgvsp: ENSP00000384709.3:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.352G>A
  hgvsp: ENSP00000312184.4:p.Glu118Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96951C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.472G>A
  hgvsp: ENSP00000351165.2:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.472G>A
  hgvsp: ENSP00000161559.6:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.567G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.547G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.567G>A
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu158Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

19-43026310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026310
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026310
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.564G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.469G>A
  hgvsp: ENSP00000384709.3:p.Val157Met
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.544G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36935C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.469G>A
  hgvsp: ENSP00000471918.1:p.Val157Met
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+60C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.349G>A
  hgvsp: ENSP00000312184.4:p.Val117Met
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.469G>A
  hgvsp: ENSP00000244291.6:p.Val157Met
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96954C>T
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.564G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.469G>A
  hgvsp: ENSP00000351165.2:p.Val157Met
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4883G>A
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.469G>A
  hgvsp: ENSP00000384083.1:p.Val157Met
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.469G>A
  hgvsp: ENSP00000161559.6:p.Val157Met
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val157Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-43026311-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026311
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026311
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.563T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.468T>C
  hgvsp: ENST00000352591.5:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.468T>C
  hgvsp: ENST00000403444.3:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.468T>C
  hgvsp: ENST00000358394.3:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96955A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.468T>C
  hgvsp: ENST00000161559.6:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.468T>C
  hgvsp: ENST00000599389.1:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36936A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.543T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.563T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.468T>C
  hgvsp: ENST00000403461.1:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4882T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.348T>C
  hgvsp: ENST00000308072.4:c.348T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+61A>G
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro156Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-43026314-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026314
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026313
    reference: chr 19
allele count: 5
allele frequency: 4.11834475487612e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.464delA
  hgvsp: ENSP00000384083.1:p.Asn155ThrfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.559delA
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+66delT
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.464delA
  hgvsp: ENSP00000384709.3:p.Asn155ThrfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.539delA
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.464delA
  hgvsp: ENSP00000351165.2:p.Asn155ThrfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.559delA
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.464delA
  hgvsp: ENSP00000161559.6:p.Asn155ThrfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96960delT
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.464delA
  hgvsp: ENSP00000244291.6:p.Asn155ThrfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36941delT
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.464delA
  hgvsp: ENSP00000471918.1:p.Asn155ThrfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.344delA
  hgvsp: ENSP00000312184.4:p.Asn115ThrfsTer26
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4878delA
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31383
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn155ThrfsTer26
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: GT
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

19-43026321-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026321
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026321
    reference: chr 19
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.458A>G
  hgvsp: ENSP00000471918.1:p.Asn153Ser
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.458A>G
  hgvsp: ENSP00000384083.1:p.Asn153Ser
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.458A>G
  hgvsp: ENSP00000161559.6:p.Asn153Ser
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.533A>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.458A>G
  hgvsp: ENSP00000384709.3:p.Asn153Ser
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4872A>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96965T>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.458A>G
  hgvsp: ENSP00000244291.6:p.Asn153Ser
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.338A>G
  hgvsp: ENSP00000312184.4:p.Asn113Ser
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.458A>G
  hgvsp: ENSP00000351165.2:p.Asn153Ser
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36946T>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.553A>G
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+71T>C
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.553A>G
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31382
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn153Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

19-43026327-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026327
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026327
    reference: chr 19
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36952C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96971C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.452G>C
  hgvsp: ENSP00000244291.6:p.Ser151Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.452G>C
  hgvsp: ENSP00000384083.1:p.Ser151Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.452G>C
  hgvsp: ENSP00000161559.6:p.Ser151Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.452G>C
  hgvsp: ENSP00000471918.1:p.Ser151Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.547G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.527G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.547G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.452G>C
  hgvsp: ENSP00000351165.2:p.Ser151Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4866G>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.452G>C
  hgvsp: ENSP00000384709.3:p.Ser151Thr
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+77C>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.332G>C
  hgvsp: ENSP00000312184.4:p.Ser111Thr
  variant of: http://identifiers.org/hgnc/1814
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31382
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser151Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-43026337-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026337
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026337
    reference: chr 19
allele count: 28
allele frequency: 2.306615042425241e-4
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+87A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.442T>C
  hgvsp: ENSP00000384083.1:p.Ser148Pro
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.442T>C
  hgvsp: ENSP00000471918.1:p.Ser148Pro
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.537T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.517T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36962A>G
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.442T>C
  hgvsp: ENSP00000244291.6:p.Ser148Pro
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.442T>C
  hgvsp: ENSP00000161559.6:p.Ser148Pro
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.442T>C
  hgvsp: ENSP00000351165.2:p.Ser148Pro
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.442T>C
  hgvsp: ENSP00000384709.3:p.Ser148Pro
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.322T>C
  hgvsp: ENSP00000312184.4:p.Ser108Pro
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.537T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4856T>C
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96981A>G
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser148Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

19-43026339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43026339
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43026339
    reference: chr 19
allele count: 5
allele frequency: 4.11936265221045e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594624
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594624.2:n.179+36964G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000351165
  ensembl transcript: ENST00000358394
  gene symbol: CEACAM1
  hgvsc: ENST00000358394.3:c.440C>T
  hgvsp: ENSP00000351165.2:p.Pro147Leu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000377806
  gene symbol: CEACAM1
  hgvsc: ENST00000377806.3:n.535C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000161559
  ensembl transcript: ENST00000161559
  gene symbol: CEACAM1
  hgvsc: ENST00000161559.6:c.440C>T
  hgvsp: ENSP00000161559.6:p.Pro147Leu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384083
  ensembl transcript: ENST00000403461
  gene symbol: CEACAM1
  hgvsc: ENST00000403461.1:c.440C>T
  hgvsp: ENSP00000384083.1:p.Pro147Leu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000325946
  ensembl transcript: ENST00000351134
  gene symbol: CEACAM1
  hgvsc: ENST00000351134.3:c.424+4854C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000384709
  ensembl transcript: ENST00000403444
  gene symbol: CEACAM1
  hgvsc: ENST00000403444.3:c.440C>T
  hgvsp: ENSP00000384709.3:p.Pro147Leu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000457234
  gene symbol: LIPE-AS1
  hgvsc: ENST00000457234.2:n.1249+89G>A
  variant of: http://identifiers.org/hgnc/48589
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000344391
  gene symbol: CEACAM1
  hgvsc: ENST00000344391.5:n.515C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079385
  ensembl transcript: ENST00000403136
  gene symbol: CEACAM1
  hgvsc: ENST00000403136.1:n.535C>T
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000471918
  ensembl transcript: ENST00000599389
  gene symbol: CEACAM1
  hgvsc: ENST00000599389.1:c.440C>T
  hgvsp: ENSP00000471918.1:p.Pro147Leu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000312184
  ensembl transcript: ENST00000308072
  gene symbol: CEACAM1
  hgvsc: ENST00000308072.4:c.320C>T
  hgvsp: ENSP00000312184.4:p.Pro107Leu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079385
  ensembl protein: ENSP00000244291
  ensembl transcript: ENST00000352591
  gene symbol: CEACAM1
  hgvsc: ENST00000352591.5:c.440C>T
  hgvsp: ENSP00000244291.6:p.Pro147Leu
  variant of: http://identifiers.org/hgnc/1814
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213904
  ensembl transcript: ENST00000594688
  gene symbol: LIPE-AS1
  hgvsc: ENST00000594688.1:n.1450+96983G>A
  variant of: http://identifiers.org/hgnc/48589
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro147Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

GenotypeDepth
all individuals: 1825
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 883
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2907
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

African
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Other
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European (Non-Finnish)
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allele num: 65642
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East Asian
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VQSLOD
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DP
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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allele num: 6614
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Other
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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MQRankSum
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
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allele frequency: 7.572315614114796e-5
allele num: 13206
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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African
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European (Non-Finnish)
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.528677999266235e-5
allele num: 65416
num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
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South Asian
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DP
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VQSLOD
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 4.499640028797696e-5
allele num: 66672
num of homozygotes: 0

East Asian
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Latino
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African
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allele frequency: 3.846153846153846e-4
allele num: 10400
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European (Finnish)
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South Asian
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Other
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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FS
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DP
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16440
num of homozygotes: 0

African
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allele num: 10398
num of homozygotes: 0

European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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East Asian
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8654
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South Asian
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European (Finnish)
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African
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Latino
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Other
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VQSLOD
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DP
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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QD
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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Latino
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African
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East Asian
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QD
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DP
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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Other
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African
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European (Finnish)
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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QD
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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FS
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GenotypeDepth
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 8.19e-1

ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
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DP
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FS
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MQRankSum
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SIO_000300: -1.61e-1

InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
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ClippingRankSum
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SIO_000300: -2.2e-2

MQRankSum
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 2.22e-1

InbreedingCoeff
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SIO_000300: 0.0e0

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
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allele count: 0
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MQ
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SIO_000300: 5.924e1

MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
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European (Finnish)
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European (Non-Finnish)
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allele count: 26
allele frequency: 3.895714713814804e-4
allele num: 66740
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DP
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MQ
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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European (Non-Finnish)
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allele num: 66740
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Latino
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European (Finnish)
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South Asian
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VQSLOD
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InbreedingCoeff
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QD
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FS
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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Other
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DP
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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FS
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VQSLOD
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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FS
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DP
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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DP
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BaseQRankSum
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VQSLOD
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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FS
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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African
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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African
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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MQ
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VQSLOD
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South Asian
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African
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European (Non-Finnish)
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DP
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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DP
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QD
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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DP
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QD
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African
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DP
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MQ
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MQ
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GenotypeQuality
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VQSLOD
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African
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European (Non-Finnish)
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FS
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VQSLOD
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MQ
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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MQ
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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QD
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FS
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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QD
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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African
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South Asian
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European (Finnish)
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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DP
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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MQRankSum
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FS
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VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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Latino
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South Asian
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African
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East Asian
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ReadPosRankSum
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DP
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MQ
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FS
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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African
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Other
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MQRankSum
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VQSLOD
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DP
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FS
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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Other
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European (Non-Finnish)
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Latino
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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Other
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African
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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FS
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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African
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South Asian
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European (Finnish)
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InbreedingCoeff
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QD
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DP
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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East Asian
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FS
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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ClippingRankSum
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East Asian
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European (Finnish)
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African
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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DP
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 66740
num of homozygotes: 0

African
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East Asian
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Latino
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South Asian
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European (Finnish)
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Other
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MQ
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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African
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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DP
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ClippingRankSum
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FS
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VQSLOD
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African
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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DP
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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East Asian
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European (Finnish)
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Latino
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QD
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FS
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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MQRankSum
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DP
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Non-Finnish)
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Other
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South Asian
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VQSLOD
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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ClippingRankSum
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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MQRankSum
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MQ
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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South Asian
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
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GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.493555542233679e-5
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQ
type: SiteQuality
SIO_000300: 5.693e1