16-15100279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100279
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100279
    reference: chr 16
allele count: 8
allele frequency: 6.614740950207537e-5
allele num: 120942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455613
  ensembl transcript: ENST00000563667
  gene symbol: PDXDC1
  hgvsc: ENST00000563667.1:c.552G>A
  hgvsp: ENSP00000455613.1:p.Glu185Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.418G>A
  hgvsp: ENSP00000437835.2:p.Glu140Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.145G>A
  hgvsp: ENSP00000400310.2:p.Glu49Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4634G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.373G>A
  hgvsp: ENSP00000454910.1:p.Glu125Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.418G>A
  hgvsp: ENSP00000406703.2:p.Glu140Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.418G>A
  hgvsp: ENSP00000379691.4:p.Glu140Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.513G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.373G>A
  hgvsp: ENSP00000322807.7:p.Glu125Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.334G>A
  hgvsp: ENSP00000391147.2:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.472G>A
  hgvsp: ENSP00000454791.1:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*203G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.337G>A
  hgvsp: ENSP00000455070.1:p.Glu113Lys
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu140Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

16-15100280-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100280
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100280
    reference: chr 16
allele count: 34
allele frequency: 2.809963801054563e-4
allele num: 120998
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.419A>G
  hgvsp: ENSP00000406703.2:p.Glu140Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.374A>G
  hgvsp: ENSP00000454910.1:p.Glu125Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.514A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.374A>G
  hgvsp: ENSP00000322807.7:p.Glu125Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.335A>G
  hgvsp: ENSP00000391147.2:p.Glu112Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.338A>G
  hgvsp: ENSP00000455070.1:p.Glu113Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.146A>G
  hgvsp: ENSP00000400310.2:p.Glu49Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.473A>G
  hgvsp: ENSP00000454791.1:p.Glu158Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.419A>G
  hgvsp: ENSP00000437835.2:p.Glu140Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4635A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455613
  ensembl transcript: ENST00000563667
  gene symbol: PDXDC1
  hgvsc: ENST00000563667.1:c.553A>G
  hgvsp: ENSP00000455613.1:p.Glu185Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*204A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.419A>G
  hgvsp: ENSP00000379691.4:p.Glu140Gly
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu140Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

16-15100284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100284
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100284
    reference: chr 16
allele count: 156
allele frequency: 1.287978863936592e-3
allele num: 121120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.477G>A
  hgvsp: ENST00000563679.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.378G>A
  hgvsp: ENST00000567306.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.150G>A
  hgvsp: ENST00000447912.2:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.518G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*208G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.423G>A
  hgvsp: ENST00000535621.2:c.423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.378G>A
  hgvsp: ENST00000325823.7:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.423G>A
  hgvsp: ENST00000455313.2:c.423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.339G>A
  hgvsp: ENST00000450288.2:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.423G>A
  hgvsp: ENST00000396410.4:c.423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.342G>A
  hgvsp: ENST00000569715.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4639G>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 9.75e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 9572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu141Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-15100293-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100293
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100293
    reference: chr 16
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.527A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.348A>G
  hgvsp: ENST00000450288.2:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*217A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.432A>G
  hgvsp: ENST00000396410.4:c.432A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.432A>G
  hgvsp: ENST00000455313.2:c.432A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.387A>G
  hgvsp: ENST00000325823.7:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.351A>G
  hgvsp: ENST00000569715.1:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.387A>G
  hgvsp: ENST00000567306.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.486A>G
  hgvsp: ENST00000563679.1:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4648A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.159A>G
  hgvsp: ENST00000447912.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.432A>G
  hgvsp: ENST00000535621.2:c.432A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu144Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

16-15100295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100295
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100295
    reference: chr 16
allele count: 227
allele frequency: 1.871516670514131e-3
allele num: 121292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.353G>A
  hgvsp: ENSP00000455070.1:p.Gly118Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.434G>A
  hgvsp: ENSP00000437835.2:p.Gly145Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.434G>A
  hgvsp: ENSP00000406703.2:p.Gly145Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.389G>A
  hgvsp: ENSP00000322807.7:p.Gly130Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.529G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.434G>A
  hgvsp: ENSP00000379691.4:p.Gly145Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.161G>A
  hgvsp: ENSP00000400310.2:p.Gly54Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.389G>A
  hgvsp: ENSP00000454910.1:p.Gly130Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4650G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.350G>A
  hgvsp: ENSP00000391147.2:p.Gly117Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.488G>A
  hgvsp: ENSP00000454791.1:p.Gly163Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*219G>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7079
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Gly145Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

16-15100301-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100301
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100301
    reference: chr 16
allele count: 220
allele frequency: 1.812907904278463e-3
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.494C>T
  hgvsp: ENSP00000454791.1:p.Ala165Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.535C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.440C>T
  hgvsp: ENSP00000379691.4:p.Ala147Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.356C>T
  hgvsp: ENSP00000391147.2:p.Ala119Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.359C>T
  hgvsp: ENSP00000455070.1:p.Ala120Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4656C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.440C>T
  hgvsp: ENSP00000437835.2:p.Ala147Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.395C>T
  hgvsp: ENSP00000322807.7:p.Ala132Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.440C>T
  hgvsp: ENSP00000406703.2:p.Ala147Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.167C>T
  hgvsp: ENSP00000400310.2:p.Ala56Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.395C>T
  hgvsp: ENSP00000454910.1:p.Ala132Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*225C>T
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala147Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-15100305-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100305
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100305
    reference: chr 16
allele count: 4
allele frequency: 3.295707341188102e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.399G>T
  hgvsp: ENSP00000454910.1:p.Lys133Asn
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.360G>T
  hgvsp: ENSP00000391147.2:p.Lys120Asn
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.444G>T
  hgvsp: ENSP00000406703.2:p.Lys148Asn
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.498G>T
  hgvsp: ENSP00000454791.1:p.Lys166Asn
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.539G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.171G>T
  hgvsp: ENSP00000400310.2:p.Lys57Asn
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.444G>T
  hgvsp: ENSP00000437835.2:p.Lys148Asn
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.444G>T
  hgvsp: ENSP00000379691.4:p.Lys148Asn
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.363G>T
  hgvsp: ENSP00000455070.1:p.Lys121Asn
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.399G>T
  hgvsp: ENSP00000322807.7:p.Lys133Asn
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4660G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*229G>T
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys148Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

16-15100306-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100306
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100306
    reference: chr 16
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.445A>T
  hgvsp: ENSP00000406703.2:p.Ile149Leu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*230A>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.445A>T
  hgvsp: ENSP00000379691.4:p.Ile149Leu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4661A>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.445A>T
  hgvsp: ENSP00000437835.2:p.Ile149Leu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.361A>T
  hgvsp: ENSP00000391147.2:p.Ile121Leu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.540A>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.364A>T
  hgvsp: ENSP00000455070.1:p.Ile122Leu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.400A>T
  hgvsp: ENSP00000454910.1:p.Ile134Leu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.499A>T
  hgvsp: ENSP00000454791.1:p.Ile167Leu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.400A>T
  hgvsp: ENSP00000322807.7:p.Ile134Leu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.172A>T
  hgvsp: ENSP00000400310.2:p.Ile58Leu
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile149Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

16-15100307-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100307
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100307
    reference: chr 16
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.500T>C
  hgvsp: ENSP00000454791.1:p.Ile167Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.446T>C
  hgvsp: ENSP00000406703.2:p.Ile149Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.541T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.362T>C
  hgvsp: ENSP00000391147.2:p.Ile121Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.446T>C
  hgvsp: ENSP00000437835.2:p.Ile149Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.401T>C
  hgvsp: ENSP00000454910.1:p.Ile134Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.446T>C
  hgvsp: ENSP00000379691.4:p.Ile149Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.173T>C
  hgvsp: ENSP00000400310.2:p.Ile58Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4662T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*231T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.401T>C
  hgvsp: ENSP00000322807.7:p.Ile134Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.365T>C
  hgvsp: ENSP00000455070.1:p.Ile122Thr
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile149Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

16-15100309-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100309
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100309
    reference: chr 16
allele count: 19
allele frequency: 1.565280432346932e-4
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.448T>C
  hgvsp: ENSP00000406703.2:p.Cys150Arg
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.543T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*233T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.364T>C
  hgvsp: ENSP00000391147.2:p.Cys122Arg
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.448T>C
  hgvsp: ENSP00000379691.4:p.Cys150Arg
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.175T>C
  hgvsp: ENSP00000400310.2:p.Cys59Arg
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.502T>C
  hgvsp: ENSP00000454791.1:p.Cys168Arg
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.403T>C
  hgvsp: ENSP00000454910.1:p.Cys135Arg
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.403T>C
  hgvsp: ENSP00000322807.7:p.Cys135Arg
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.367T>C
  hgvsp: ENSP00000455070.1:p.Cys123Arg
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4664T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.448T>C
  hgvsp: ENSP00000437835.2:p.Cys150Arg
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys150Arg
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

16-15100312-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100312
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100312
    reference: chr 16
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.546A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4667A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.505A>G
  hgvsp: ENSP00000454791.1:p.Arg169Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.406A>G
  hgvsp: ENSP00000322807.7:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.451A>G
  hgvsp: ENSP00000379691.4:p.Arg151Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.406A>G
  hgvsp: ENSP00000454910.1:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.451A>G
  hgvsp: ENSP00000437835.2:p.Arg151Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.178A>G
  hgvsp: ENSP00000400310.2:p.Arg60Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.370A>G
  hgvsp: ENSP00000455070.1:p.Arg124Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.451A>G
  hgvsp: ENSP00000406703.2:p.Arg151Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.367A>G
  hgvsp: ENSP00000391147.2:p.Arg123Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*236A>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg151Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-15100318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100318
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100318
    reference: chr 16
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.457G>A
  hgvsp: ENSP00000437835.2:p.Ala153Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.412G>A
  hgvsp: ENSP00000454910.1:p.Ala138Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.373G>A
  hgvsp: ENSP00000391147.2:p.Ala125Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.457G>A
  hgvsp: ENSP00000406703.2:p.Ala153Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4673G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.511G>A
  hgvsp: ENSP00000454791.1:p.Ala171Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.376G>A
  hgvsp: ENSP00000455070.1:p.Ala126Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.457G>A
  hgvsp: ENSP00000379691.4:p.Ala153Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*242G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.184G>A
  hgvsp: ENSP00000400310.2:p.Ala62Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.412G>A
  hgvsp: ENSP00000322807.7:p.Ala138Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.552G>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala153Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

16-15100330-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100330
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100330
    reference: chr 16
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.196C>G
  hgvsp: ENSP00000400310.2:p.Arg66Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.564C>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.385C>G
  hgvsp: ENSP00000391147.2:p.Arg129Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.424C>G
  hgvsp: ENSP00000322807.7:p.Arg142Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.424C>G
  hgvsp: ENSP00000454910.1:p.Arg142Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.388C>G
  hgvsp: ENSP00000455070.1:p.Arg130Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.469C>G
  hgvsp: ENSP00000437835.2:p.Arg157Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.469C>G
  hgvsp: ENSP00000406703.2:p.Arg157Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.523C>G
  hgvsp: ENSP00000454791.1:p.Arg175Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.469C>G
  hgvsp: ENSP00000379691.4:p.Arg157Gly
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*254C>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4685C>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg157Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

16-15100331-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100331
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100331
    reference: chr 16
allele count: 6
allele frequency: 4.942502224126001e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.470G>A
  hgvsp: ENSP00000406703.2:p.Arg157Gln
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.386G>A
  hgvsp: ENSP00000391147.2:p.Arg129Gln
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.197G>A
  hgvsp: ENSP00000400310.2:p.Arg66Gln
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.425G>A
  hgvsp: ENSP00000322807.7:p.Arg142Gln
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.470G>A
  hgvsp: ENSP00000437835.2:p.Arg157Gln
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.470G>A
  hgvsp: ENSP00000379691.4:p.Arg157Gln
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.524G>A
  hgvsp: ENSP00000454791.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.389G>A
  hgvsp: ENSP00000455070.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.565G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*255G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.425G>A
  hgvsp: ENSP00000454910.1:p.Arg142Gln
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4686G>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg157Gln
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

16-15100338-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100338
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100338
    reference: chr 16
allele count: 53
allele frequency: 4.365661191743134e-4
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.572A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.432A>G
  hgvsp: ENST00000567306.1:c.432A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4693A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.477A>G
  hgvsp: ENST00000396410.4:c.477A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.393A>G
  hgvsp: ENST00000450288.2:c.393A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.477A>G
  hgvsp: ENST00000455313.2:c.477A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.396A>G
  hgvsp: ENST00000569715.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.432A>G
  hgvsp: ENST00000325823.7:c.432A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.477A>G
  hgvsp: ENST00000535621.2:c.477A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.531A>G
  hgvsp: ENST00000563679.1:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.204A>G
  hgvsp: ENST00000447912.2:c.204A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*262A>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu159Glu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

16-15100341-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100341
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100341
    reference: chr 16
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.480C>G
  hgvsp: ENSP00000379691.4:p.Asp160Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.207C>G
  hgvsp: ENSP00000400310.2:p.Asp69Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4696C>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*265C>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.480C>G
  hgvsp: ENSP00000406703.2:p.Asp160Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.399C>G
  hgvsp: ENSP00000455070.1:p.Asp133Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.435C>G
  hgvsp: ENSP00000454910.1:p.Asp145Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.575C>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.435C>G
  hgvsp: ENSP00000322807.7:p.Asp145Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.396C>G
  hgvsp: ENSP00000391147.2:p.Asp132Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.480C>G
  hgvsp: ENSP00000437835.2:p.Asp160Glu
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.534C>G
  hgvsp: ENSP00000454791.1:p.Asp178Glu
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp160Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

16-15100341-CTTCG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100341
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100337
    reference: chr 16
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.209_212delTCGT
  hgvsp: ENSP00000400310.2:p.Phe70Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.437_440delTCGT
  hgvsp: ENSP00000322807.7:p.Phe146Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*267_*270delTCGT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.482_485delTCGT
  hgvsp: ENSP00000406703.2:p.Phe161Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.482_485delTCGT
  hgvsp: ENSP00000437835.2:p.Phe161Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.401_404delTCGT
  hgvsp: ENSP00000455070.1:p.Phe134Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4698_174+4701delTCGT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.482_485delTCGT
  hgvsp: ENSP00000379691.4:p.Phe161Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.437_440delTCGT
  hgvsp: ENSP00000454910.1:p.Phe146Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.577_580delTCGT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.398_401delTCGT
  hgvsp: ENSP00000391147.2:p.Phe133Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.536_539delTCGT
  hgvsp: ENSP00000454791.1:p.Phe179Ter
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe161Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: CTTCG
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-15100344-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100344
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100344
    reference: chr 16
allele count: 5
allele frequency: 4.118616144975288e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.402C>T
  hgvsp: ENST00000569715.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.399C>T
  hgvsp: ENST00000450288.2:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.537C>T
  hgvsp: ENST00000563679.1:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.483C>T
  hgvsp: ENST00000455313.2:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.483C>T
  hgvsp: ENST00000535621.2:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*268C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.210C>T
  hgvsp: ENST00000447912.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4699C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.438C>T
  hgvsp: ENST00000567306.1:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.483C>T
  hgvsp: ENST00000396410.4:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.438C>T
  hgvsp: ENST00000325823.7:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.578C>T
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe161Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

16-15100345-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100345
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100345
    reference: chr 16
allele count: 123
allele frequency: 1.013179571663921e-3
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.439G>A
  hgvsp: ENSP00000322807.7:p.Val147Ile
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.484G>A
  hgvsp: ENSP00000379691.4:p.Val162Ile
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.439G>A
  hgvsp: ENSP00000454910.1:p.Val147Ile
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.579G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.484G>A
  hgvsp: ENSP00000406703.2:p.Val162Ile
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.211G>A
  hgvsp: ENSP00000400310.2:p.Val71Ile
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*269G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.484G>A
  hgvsp: ENSP00000437835.2:p.Val162Ile
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4700G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.538G>A
  hgvsp: ENSP00000454791.1:p.Val180Ile
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.400G>A
  hgvsp: ENSP00000391147.2:p.Val134Ile
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.403G>A
  hgvsp: ENSP00000455070.1:p.Val135Ile
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val162Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

16-15100349-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100349
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100349
    reference: chr 16
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.488T>C
  hgvsp: ENSP00000406703.2:p.Val163Ala
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*273T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.583T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.443T>C
  hgvsp: ENSP00000322807.7:p.Val148Ala
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.404T>C
  hgvsp: ENSP00000391147.2:p.Val135Ala
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.215T>C
  hgvsp: ENSP00000400310.2:p.Val72Ala
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.488T>C
  hgvsp: ENSP00000437835.2:p.Val163Ala
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.443T>C
  hgvsp: ENSP00000454910.1:p.Val148Ala
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.407T>C
  hgvsp: ENSP00000455070.1:p.Val136Ala
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4704T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.488T>C
  hgvsp: ENSP00000379691.4:p.Val163Ala
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.542T>C
  hgvsp: ENSP00000454791.1:p.Val181Ala
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val163Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

16-15100361-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100361
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100361
    reference: chr 16
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.554A>G
  hgvsp: ENSP00000454791.1:p.Asn185Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*285A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.455A>G
  hgvsp: ENSP00000322807.7:p.Asn152Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.500A>G
  hgvsp: ENSP00000379691.4:p.Asn167Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.227A>G
  hgvsp: ENSP00000400310.2:p.Asn76Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.455A>G
  hgvsp: ENSP00000454910.1:p.Asn152Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4716A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.500A>G
  hgvsp: ENSP00000437835.2:p.Asn167Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.416A>G
  hgvsp: ENSP00000391147.2:p.Asn139Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.595A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.500A>G
  hgvsp: ENSP00000406703.2:p.Asn167Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.419A>G
  hgvsp: ENSP00000455070.1:p.Asn140Ser
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn167Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

16-15100367-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100367
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100368
    reference: chr 16
allele count: 14
allele frequency: 1.153288519836563e-4
allele num: 121392
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.507dupA
  hgvsp: ENSP00000406703.2:p.Tyr170IlefsTer2
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.423dupA
  hgvsp: ENSP00000391147.2:p.Tyr142IlefsTer2
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.561dupA
  hgvsp: ENSP00000454791.1:p.Tyr188IlefsTer2
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.507dupA
  hgvsp: ENSP00000437835.2:p.Tyr170IlefsTer2
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.462dupA
  hgvsp: ENSP00000454910.1:p.Tyr155IlefsTer2
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.602dupA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.507dupA
  hgvsp: ENSP00000379691.4:p.Tyr170IlefsTer2
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.426dupA
  hgvsp: ENSP00000455070.1:p.Tyr143IlefsTer2
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*292dupA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4723dupA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.462dupA
  hgvsp: ENSP00000322807.7:p.Tyr155IlefsTer2
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.234dupA
  hgvsp: ENSP00000400310.2:p.Tyr79IlefsTer2
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr170IlefsTer2
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-15100374-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100374
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100374
    reference: chr 16
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.608C>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.513C>A
  hgvsp: ENSP00000379691.4:p.Asn171Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.567C>A
  hgvsp: ENSP00000454791.1:p.Asn189Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.429C>A
  hgvsp: ENSP00000391147.2:p.Asn143Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.468C>A
  hgvsp: ENSP00000322807.7:p.Asn156Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.240C>A
  hgvsp: ENSP00000400310.2:p.Asn80Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.432C>A
  hgvsp: ENSP00000455070.1:p.Asn144Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.513C>A
  hgvsp: ENSP00000437835.2:p.Asn171Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*298C>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.468C>A
  hgvsp: ENSP00000454910.1:p.Asn156Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.513C>A
  hgvsp: ENSP00000406703.2:p.Asn171Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4729C>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn171Lys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

16-15100374-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100374
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100374
    reference: chr 16
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.429C>G
  hgvsp: ENSP00000391147.2:p.Asn143Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.513C>G
  hgvsp: ENSP00000437835.2:p.Asn171Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.513C>G
  hgvsp: ENSP00000379691.4:p.Asn171Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.432C>G
  hgvsp: ENSP00000455070.1:p.Asn144Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4729C>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.513C>G
  hgvsp: ENSP00000406703.2:p.Asn171Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.567C>G
  hgvsp: ENSP00000454791.1:p.Asn189Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.240C>G
  hgvsp: ENSP00000400310.2:p.Asn80Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.468C>G
  hgvsp: ENSP00000454910.1:p.Asn156Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.608C>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.468C>G
  hgvsp: ENSP00000322807.7:p.Asn156Lys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*298C>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn171Lys
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

16-15100387-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100387
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100387
    reference: chr 16
allele count: 4
allele frequency: 3.296304842271814e-5
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4742A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.526A>G
  hgvsp: ENSP00000437835.2:p.Ile176Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.481A>G
  hgvsp: ENSP00000454910.1:p.Ile161Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.442A>G
  hgvsp: ENSP00000391147.2:p.Ile148Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.621A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.253A>G
  hgvsp: ENSP00000400310.2:p.Ile85Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.526A>G
  hgvsp: ENSP00000406703.2:p.Ile176Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.580A>G
  hgvsp: ENSP00000454791.1:p.Ile194Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.445A>G
  hgvsp: ENSP00000455070.1:p.Ile149Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.481A>G
  hgvsp: ENSP00000322807.7:p.Ile161Val
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*311A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.526A>G
  hgvsp: ENSP00000379691.4:p.Ile176Val
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile176Val
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-15100391-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100391
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100391
    reference: chr 16
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.485A>G
  hgvsp: ENSP00000322807.7:p.Tyr162Cys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.449A>G
  hgvsp: ENSP00000455070.1:p.Tyr150Cys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.485A>G
  hgvsp: ENSP00000454910.1:p.Tyr162Cys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4746A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.530A>G
  hgvsp: ENSP00000406703.2:p.Tyr177Cys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*315A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.446A>G
  hgvsp: ENSP00000391147.2:p.Tyr149Cys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.584A>G
  hgvsp: ENSP00000454791.1:p.Tyr195Cys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.530A>G
  hgvsp: ENSP00000379691.4:p.Tyr177Cys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.257A>G
  hgvsp: ENSP00000400310.2:p.Tyr86Cys
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.625A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.530A>G
  hgvsp: ENSP00000437835.2:p.Tyr177Cys
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr177Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-15100392-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100392
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100392
    reference: chr 16
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.450T>C
  hgvsp: ENST00000569715.1:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.486T>C
  hgvsp: ENST00000567306.1:c.486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.626T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.531T>C
  hgvsp: ENST00000396410.4:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.531T>C
  hgvsp: ENST00000455313.2:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4747T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.585T>C
  hgvsp: ENST00000563679.1:c.585T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.447T>C
  hgvsp: ENST00000450288.2:c.447T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*316T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.486T>C
  hgvsp: ENST00000325823.7:c.486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.531T>C
  hgvsp: ENST00000535621.2:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.258T>C
  hgvsp: ENST00000447912.2:c.258T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr177Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-15100399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100399
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100399
    reference: chr 16
allele count: 101
allele frequency: 8.332095893349172e-4
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.265G>A
  hgvsp: ENSP00000400310.2:p.Ala89Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.493G>A
  hgvsp: ENSP00000454910.1:p.Ala165Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.457G>A
  hgvsp: ENSP00000455070.1:p.Ala153Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.538G>A
  hgvsp: ENSP00000437835.2:p.Ala180Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.493G>A
  hgvsp: ENSP00000322807.7:p.Ala165Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*323G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.538G>A
  hgvsp: ENSP00000406703.2:p.Ala180Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.538G>A
  hgvsp: ENSP00000379691.4:p.Ala180Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.454G>A
  hgvsp: ENSP00000391147.2:p.Ala152Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.592G>A
  hgvsp: ENSP00000454791.1:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4754G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.633G>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 9.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9656
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala180Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP

16-15100405-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100405
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100405
    reference: chr 16
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.271G>T
  hgvsp: ENSP00000400310.2:p.Ala91Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.499G>T
  hgvsp: ENSP00000322807.7:p.Ala167Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4760G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.499G>T
  hgvsp: ENSP00000454910.1:p.Ala167Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.598G>T
  hgvsp: ENSP00000454791.1:p.Ala200Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.639G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.544G>T
  hgvsp: ENSP00000379691.4:p.Ala182Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.544G>T
  hgvsp: ENSP00000437835.2:p.Ala182Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.544G>T
  hgvsp: ENSP00000406703.2:p.Ala182Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.460G>T
  hgvsp: ENSP00000391147.2:p.Ala154Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.463G>T
  hgvsp: ENSP00000455070.1:p.Ala155Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*329G>T
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala182Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

16-15100407-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100407
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100407
    reference: chr 16
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*331T>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.546T>A
  hgvsp: ENST00000455313.2:c.546T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.546T>A
  hgvsp: ENST00000535621.2:c.546T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.465T>A
  hgvsp: ENST00000569715.1:c.465T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.462T>A
  hgvsp: ENST00000450288.2:c.462T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.501T>A
  hgvsp: ENST00000567306.1:c.501T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.546T>A
  hgvsp: ENST00000396410.4:c.546T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.600T>A
  hgvsp: ENST00000563679.1:c.600T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.501T>A
  hgvsp: ENST00000325823.7:c.501T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.641T>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4762T>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.273T>A
  hgvsp: ENST00000447912.2:c.273T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala182Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

16-15100411-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100411
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100411
    reference: chr 16
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.505C>T
  hgvsp: ENSP00000322807.7:p.Pro169Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4766C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.505C>T
  hgvsp: ENSP00000454910.1:p.Pro169Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.550C>T
  hgvsp: ENSP00000437835.2:p.Pro184Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.550C>T
  hgvsp: ENSP00000406703.2:p.Pro184Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.604C>T
  hgvsp: ENSP00000454791.1:p.Pro202Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.469C>T
  hgvsp: ENSP00000455070.1:p.Pro157Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.645C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*335C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.550C>T
  hgvsp: ENSP00000379691.4:p.Pro184Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.466C>T
  hgvsp: ENSP00000391147.2:p.Pro156Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.277C>T
  hgvsp: ENSP00000400310.2:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro184Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-15100413-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100413
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100413
    reference: chr 16
allele count: 1
allele frequency: 8.268152729317216e-6
allele num: 120946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.552T>G
  hgvsp: ENST00000535621.2:c.552T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.468T>G
  hgvsp: ENST00000450288.2:c.468T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.507T>G
  hgvsp: ENST00000325823.7:c.507T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.471T>G
  hgvsp: ENST00000569715.1:c.471T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.507T>G
  hgvsp: ENST00000567306.1:c.507T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.647T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4768T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.552T>G
  hgvsp: ENST00000396410.4:c.552T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.552T>G
  hgvsp: ENST00000455313.2:c.552T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.606T>G
  hgvsp: ENST00000563679.1:c.606T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*337T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.279T>G
  hgvsp: ENST00000447912.2:c.279T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro184Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum

16-15100414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100414
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100414
    reference: chr 16
allele count: 2
allele frequency: 1.654095540558423e-5
allele num: 120912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.553G>A
  hgvsp: ENSP00000406703.2:p.Gly185Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.553G>A
  hgvsp: ENSP00000379691.4:p.Gly185Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.472G>A
  hgvsp: ENSP00000455070.1:p.Gly158Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.508G>A
  hgvsp: ENSP00000322807.7:p.Gly170Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.508G>A
  hgvsp: ENSP00000454910.1:p.Gly170Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.553G>A
  hgvsp: ENSP00000437835.2:p.Gly185Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.280G>A
  hgvsp: ENSP00000400310.2:p.Gly94Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4769G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.469G>A
  hgvsp: ENSP00000391147.2:p.Gly157Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.648G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.607G>A
  hgvsp: ENSP00000454791.1:p.Gly203Ser
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*338G>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly185Ser
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

16-15100416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100416
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100416
    reference: chr 16
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.510C>T
  hgvsp: ENST00000567306.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.555C>T
  hgvsp: ENST00000396410.4:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.510C>T
  hgvsp: ENST00000325823.7:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.474C>T
  hgvsp: ENST00000569715.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.471C>T
  hgvsp: ENST00000450288.2:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.555C>T
  hgvsp: ENST00000535621.2:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.650C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*340C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.282C>T
  hgvsp: ENST00000447912.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.555C>T
  hgvsp: ENST00000455313.2:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4771C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.609C>T
  hgvsp: ENST00000563679.1:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly185Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-15100417-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100417
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100417
    reference: chr 16
allele count: 1
allele frequency: 8.276090374906894e-6
allele num: 120830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.283C>T
  hgvsp: ENST00000447912.2:c.283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.511C>T
  hgvsp: ENST00000325823.7:c.511C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.610C>T
  hgvsp: ENST00000563679.1:c.610C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.475C>T
  hgvsp: ENST00000569715.1:c.475C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.556C>T
  hgvsp: ENST00000396410.4:c.556C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.556C>T
  hgvsp: ENST00000455313.2:c.556C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*341C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.472C>T
  hgvsp: ENST00000450288.2:c.472C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.556C>T
  hgvsp: ENST00000535621.2:c.556C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4772C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.511C>T
  hgvsp: ENST00000567306.1:c.511C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.651C>T
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu186Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

16-15100421-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100421
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100422
    reference: chr 16
allele count: 2
allele frequency: 1.656671415791392e-5
allele num: 120724
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.481dupC
  hgvsp: ENSP00000455070.1:p.Gln161ProfsTer5
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.562dupC
  hgvsp: ENSP00000437835.2:p.Gln188ProfsTer5
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.657dupC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4778dupC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.562dupC
  hgvsp: ENSP00000406703.2:p.Gln188ProfsTer5
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.562dupC
  hgvsp: ENSP00000379691.4:p.Gln188ProfsTer5
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.478dupC
  hgvsp: ENSP00000391147.2:p.Gln160ProfsTer5
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.517dupC
  hgvsp: ENSP00000454910.1:p.Gln173ProfsTer5
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.517dupC
  hgvsp: ENSP00000322807.7:p.Gln173ProfsTer5
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.289dupC
  hgvsp: ENSP00000400310.2:p.Gln97ProfsTer5
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*347dupC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.616dupC
  hgvsp: ENSP00000454791.1:p.Gln206ProfsTer5
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln188ProfsTer5
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-15100422-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100422
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100422
    reference: chr 16
allele count: 14
allele frequency: 1.160169716255635e-4
allele num: 120672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.477C>A
  hgvsp: ENST00000450288.2:c.477C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.656C>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4777C>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.561C>A
  hgvsp: ENST00000455313.2:c.561C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.516C>A
  hgvsp: ENST00000325823.7:c.516C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.615C>A
  hgvsp: ENST00000563679.1:c.615C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.516C>A
  hgvsp: ENST00000567306.1:c.516C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.561C>A
  hgvsp: ENST00000396410.4:c.561C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.561C>A
  hgvsp: ENST00000535621.2:c.561C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.480C>A
  hgvsp: ENST00000569715.1:c.480C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.288C>A
  hgvsp: ENST00000447912.2:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*346C>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly187Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

16-15100425-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100425
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100425
    reference: chr 16
allele count: 1
allele frequency: 8.296414289743973e-6
allele num: 120534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.659A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.483A>G
  hgvsp: ENST00000569715.1:c.483A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4780A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.618A>G
  hgvsp: ENST00000563679.1:c.618A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.564A>G
  hgvsp: ENST00000455313.2:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.564A>G
  hgvsp: ENST00000396410.4:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.564A>G
  hgvsp: ENST00000535621.2:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.519A>G
  hgvsp: ENST00000325823.7:c.519A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.480A>G
  hgvsp: ENST00000450288.2:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.291A>G
  hgvsp: ENST00000447912.2:c.291A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.519A>G
  hgvsp: ENST00000567306.1:c.519A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*349A>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln188Gln
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-15100426-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100426
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100426
    reference: chr 16
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.565T>C
  hgvsp: ENSP00000379691.4:p.Tyr189His
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.619T>C
  hgvsp: ENSP00000454791.1:p.Tyr207His
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.565T>C
  hgvsp: ENSP00000437835.2:p.Tyr189His
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.520T>C
  hgvsp: ENSP00000454910.1:p.Tyr174His
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.292T>C
  hgvsp: ENSP00000400310.2:p.Tyr98His
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.520T>C
  hgvsp: ENSP00000322807.7:p.Tyr174His
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.565T>C
  hgvsp: ENSP00000406703.2:p.Tyr189His
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.481T>C
  hgvsp: ENSP00000391147.2:p.Tyr161His
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4781T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*350T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.484T>C
  hgvsp: ENSP00000455070.1:p.Tyr162His
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.660T>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr189His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-15100428-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100428
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100428
    reference: chr 16
allele count: 1
allele frequency: 8.303716743614441e-6
allele num: 120428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.483C>A
  hgvsp: ENSP00000391147.2:p.Tyr161Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.662C>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.522C>A
  hgvsp: ENSP00000322807.7:p.Tyr174Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.567C>A
  hgvsp: ENSP00000406703.2:p.Tyr189Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4783C>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.567C>A
  hgvsp: ENSP00000437835.2:p.Tyr189Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*352C>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.567C>A
  hgvsp: ENSP00000379691.4:p.Tyr189Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.486C>A
  hgvsp: ENSP00000455070.1:p.Tyr162Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.294C>A
  hgvsp: ENSP00000400310.2:p.Tyr98Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.522C>A
  hgvsp: ENSP00000454910.1:p.Tyr174Ter
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.621C>A
  hgvsp: ENSP00000454791.1:p.Tyr207Ter
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr189Ter
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

16-15100429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100429
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100429
    reference: chr 16
allele count: 1
allele frequency: 8.304544246611745e-6
allele num: 120416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.622C>T
  hgvsp: ENSP00000454791.1:p.Leu208Phe
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*353C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.568C>T
  hgvsp: ENSP00000406703.2:p.Leu190Phe
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.523C>T
  hgvsp: ENSP00000454910.1:p.Leu175Phe
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.484C>T
  hgvsp: ENSP00000391147.2:p.Leu162Phe
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.663C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.568C>T
  hgvsp: ENSP00000437835.2:p.Leu190Phe
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.487C>T
  hgvsp: ENSP00000455070.1:p.Leu163Phe
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.568C>T
  hgvsp: ENSP00000379691.4:p.Leu190Phe
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.523C>T
  hgvsp: ENSP00000322807.7:p.Leu175Phe
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4784C>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.295C>T
  hgvsp: ENSP00000400310.2:p.Leu99Phe
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu190Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

16-15100431-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100431
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100431
    reference: chr 16
allele count: 4
allele frequency: 3.323252799840484e-5
allele num: 120364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4786T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.525T>G
  hgvsp: ENST00000567306.1:c.525T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.570T>G
  hgvsp: ENST00000455313.2:c.570T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.525T>G
  hgvsp: ENST00000325823.7:c.525T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*355T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.665T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.570T>G
  hgvsp: ENST00000535621.2:c.570T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.570T>G
  hgvsp: ENST00000396410.4:c.570T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.486T>G
  hgvsp: ENST00000450288.2:c.486T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.297T>G
  hgvsp: ENST00000447912.2:c.297T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.489T>G
  hgvsp: ENST00000569715.1:c.489T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.624T>G
  hgvsp: ENST00000563679.1:c.624T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu190Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

16-15100449-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100449
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100449
    reference: chr 16
allele count: 1
allele frequency: 8.342231713828083e-6
allele num: 119872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4804G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+9G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+9G>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

16-15100449-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100449
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100449
    reference: chr 16
allele count: 1
allele frequency: 8.342231713828083e-6
allele num: 119872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4804G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+9G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+9G>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

16-15100449-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100449
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100449
    reference: chr 16
allele count: 1
allele frequency: 8.342231713828083e-6
allele num: 119872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4804G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+9G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+9G>T
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

16-15100462-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100462
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100463
    reference: chr 16
allele count: 192
allele frequency: 1.607824747102566e-3
allele num: 119416
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4821dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+26dupT
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+26dupT
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6306
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 8670
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8953
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 4.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-15100462-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100462
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100462
    reference: chr 16
allele count: 13
allele frequency: 1.088631339184029e-4
allele num: 119416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4817A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+22A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+22A>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

16-15100465-TTAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100465
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100462
    reference: chr 16
allele count: 1
allele frequency: 8.377875705836028e-6
allele num: 119362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+26_534+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+26_498+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+26_579+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+26_495+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+26_*364+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+26_306+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+26_674+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+26_534+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+26_579+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4821_174+4823delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+26_633+28delTAA
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+26_579+28delTAA
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: TTAA
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/16-15100469-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100469
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100469
    reference: chr 16
allele count: 1
allele frequency: 8.382932349735938e-6
allele num: 119290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4824A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+29A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+29A>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

16-15100470-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100470
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100470
    reference: chr 16
allele count: 1
allele frequency: 8.385322331790435e-6
allele num: 119256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4825G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+30G>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+30G>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-15100470-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100470
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100470
    reference: chr 16
allele count: 4
allele frequency: 3.354128932716174e-5
allele num: 119256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4825G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+30G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+30G>T
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-15100471-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100471
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100471
    reference: chr 16
allele count: 1
allele frequency: 8.385603595746822e-6
allele num: 119252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4826A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+31A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+31A>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

16-15100475-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100475
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100475
    reference: chr 16
allele count: 1
allele frequency: 8.39433214693439e-6
allele num: 119128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4830A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+35A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+35A>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-15100488-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15100488
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15100488
    reference: chr 16
allele count: 5
allele frequency: 4.242033461159942e-5
allele num: 117868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.498+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.633+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.495+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.306+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*364+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.534+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+4843G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.579+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.674+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.579+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.534+48G>T
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.579+48G>T
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/16-15102590-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102590
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102590
    reference: chr 16
allele count: 4
allele frequency: 3.298751422586551e-5
allele num: 121258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-46A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-46A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-46A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-948A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-46A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-46A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-46A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-46A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-46A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-46A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6945A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-948A>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27225
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

16-15102591-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102591
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102591
    reference: chr 16
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-45T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6946T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-45T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-45T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-45T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-45T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-45T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-45T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-45T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-947T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-45T>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-947T>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-15102591-T-TTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102591
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102593
    reference: chr 16
allele count: 112
allele frequency: 9.235742322789194e-4
allele num: 121268
alternate allele: TTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-45_496-44insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-45_535-44insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6946_174+6947insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-45_580-44insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-45_307-44insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-45_634-44insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-45_675-44insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-45_499-44insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-947_580-946insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-947_535-946insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-45_580-44insTC
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-45_*365-44insTC
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27230
  bin: 9.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

16-15102596-C-CAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102596
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102598
    reference: chr 16
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: CAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-35_634-34dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-35_535-34dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-35_499-34dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-35_580-34dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-35_496-34dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-35_580-34dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-35_675-34dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-35_*365-34dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-937_580-936dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6956_174+6957dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-35_307-34dupAG
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-937_535-936dupAG
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-15102597-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102597
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102597
    reference: chr 16
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-39A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-39A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-39A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-39A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-39A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-39A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-39A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-941A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-39A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6952A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-941A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-39A>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

16-15102602-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102602
    reference: chr 16
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-34G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-34G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-34G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-34G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-936G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-936G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6957G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-34G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-34G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-34G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-34G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-34G>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27228
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

16-15102613-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102613
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102613
    reference: chr 16
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-23A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-23A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-925A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-23A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-23A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6968A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-925A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-23A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-23A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-23A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-23A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-23A>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27229
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/16-15102613-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102613
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102613
    reference: chr 16
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-23A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-925A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-23A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-23A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-23A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-23A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6968A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-23A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-23A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-23A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-23A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-925A>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27229
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS

http://identifiers.org/exac.variant/16-15102614-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102614
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102614
    reference: chr 16
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-22A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-22A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-22A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6969A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-22A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-924A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-22A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-924A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-22A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-22A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-22A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-22A>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27228
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

16-15102615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102615
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102615
    reference: chr 16
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-21G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-21G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-21G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-21G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-21G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-21G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-21G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-21G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-923G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-923G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6970G>A
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-21G>A
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-15102618-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102618
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102618
    reference: chr 16
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-18A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6973A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-18A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-18A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-18A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-18A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-18A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-18A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-920A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-920A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-18A>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-18A>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27229
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-15102618-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102618
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102618
    reference: chr 16
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-18A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-920A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-18A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-18A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-18A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-18A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-18A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-18A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-18A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-18A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-920A>G
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6973A>G
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27229
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

16-15102621-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15102621
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15102621
    reference: chr 16
allele count: 4
allele frequency: 3.296196189597204e-5
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl transcript: ENST00000570001
  gene symbol: PDXDC1
  hgvsc: ENST00000570001.1:n.675-15T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000400310
  ensembl transcript: ENST00000447912
  gene symbol: PDXDC1
  hgvsc: ENST00000447912.2:c.307-15T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000406703
  ensembl transcript: ENST00000455313
  gene symbol: PDXDC1
  hgvsc: ENST00000455313.2:c.580-917T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455070
  ensembl transcript: ENST00000569715
  gene symbol: PDXDC1
  hgvsc: ENST00000569715.1:c.499-15T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454791
  ensembl transcript: ENST00000563679
  gene symbol: PDXDC1
  hgvsc: ENST00000563679.1:c.634-15T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000437835
  ensembl transcript: ENST00000535621
  gene symbol: PDXDC1
  hgvsc: ENST00000535621.2:c.580-15T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000322807
  ensembl transcript: ENST00000325823
  gene symbol: PDXDC1
  hgvsc: ENST00000325823.7:c.535-15T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000379691
  ensembl transcript: ENST00000396410
  gene symbol: PDXDC1
  hgvsc: ENST00000396410.4:c.580-15T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000391147
  ensembl transcript: ENST00000450288
  gene symbol: PDXDC1
  hgvsc: ENST00000450288.2:c.496-15T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000455486
  ensembl transcript: ENST00000562119
  gene symbol: PDXDC1
  hgvsc: ENST00000562119.1:c.174+6976T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454910
  ensembl transcript: ENST00000567306
  gene symbol: PDXDC1
  hgvsc: ENST00000567306.1:c.535-917T>C
  variant of: http://identifiers.org/hgnc/28995
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179889
  ensembl protein: ENSP00000454279
  ensembl transcript: ENST00000565362
  gene symbol: PDXDC1
  hgvsc: ENST00000565362.1:c.*365-15T>C
  variant of: http://identifiers.org/hgnc/28995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27230
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 2663
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 410
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3790
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1231
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 682
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24400
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000660145231951e-5
allele num: 66652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.816027740319784e-4
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

FS
type: SiteQuality
SIO_000300: 6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQ
type: SiteQuality
SIO_000300: 3.653e1

DP
type: SiteQuality
SIO_000300: 2.638877e6

QD
type: SiteQuality
SIO_000300: 5.78e0

VQSLOD
type: SiteQuality
SIO_000300: -2.217e0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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bin: 6.75e1
variant carriers: 6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 34

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5181
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 2.035780382479951e-3
allele num: 16210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 3.757e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

FS
type: SiteQuality
SIO_000300: 1.425e0

QD
type: SiteQuality
SIO_000300: 5.52e0

VQSLOD
type: SiteQuality
SIO_000300: -2.927e0

DP
type: SiteQuality
SIO_000300: 2.640085e6

GenotypeDepth
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bin: 7.75e1
variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 156

GenotypeQuality
all individuals: 3659
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 105
allele frequency: 1.587541578469912e-2
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.31858407079646e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.048590281943611e-4
allele num: 66680
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.655994e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

FS
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 4.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 3.623e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.327e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 2278
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variant carriers: 0

GenotypeQuality
all individuals: 24365
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

QD
type: SiteQuality
SIO_000300: 6.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 2.639883e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 5.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.236e0

MQ
type: SiteQuality
SIO_000300: 4.948e1

GenotypeDepth
all individuals: 2964
bin: 9.75e1
variant carriers: 189

GenotypeDepth
all individuals: 3787
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variant carriers: 4

GenotypeDepth
all individuals: 1226
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variant carriers: 3

GenotypeDepth
all individuals: 413
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variant carriers: 5

GenotypeQuality
all individuals: 3659
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 24428
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variant carriers: 225

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16701
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 103
allele frequency: 1.543857545416392e-3
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218026796589525e-4
allele num: 16420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.502418797512094e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 102
allele frequency: 9.802037286181049e-3
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.209555488358028e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 4.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.957e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.423e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

MQ
type: SiteQuality
SIO_000300: 3.902e1

DP
type: SiteQuality
SIO_000300: 2.663173e6

GenotypeDepth
all individuals: 2644
bin: 5.75e1
variant carriers: 0

GenotypeDepth
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bin: 9.75e1
variant carriers: 213

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 219

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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variant carriers: 0

European (Finnish)
type: Population
allele count: 37
allele frequency: 5.594194133655882e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 169
allele frequency: 2.532594035666117e-3
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 6
allele frequency: 5.183137525915688e-4
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.996e1

DP
type: SiteQuality
SIO_000300: 2.666808e6

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

BaseQRankSum
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.901e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 2281
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.321e0

ClippingRankSum
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SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 4.029e1

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 3.76e0

VQSLOD
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DP
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SIO_000300: 2.637004e6

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 3157
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3456
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GenotypeQuality
all individuals: 1
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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European (Non-Finnish)
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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South Asian
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East Asian
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VQSLOD
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DP
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FS
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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MQ
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VQSLOD
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QD
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FS
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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East Asian
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European (Non-Finnish)
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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South Asian
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ClippingRankSum
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DP
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VQSLOD
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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DP
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FS
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VQSLOD
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East Asian
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African
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VQSLOD
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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African
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Latino
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East Asian
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South Asian
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DP
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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MQRankSum
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MQ
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ClippingRankSum
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QD
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FS
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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East Asian
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European (Non-Finnish)
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South Asian
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African
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Latino
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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African
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Other
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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MQ
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MQRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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South Asian
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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DP
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.798183834327329e-4
allele num: 66734
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.21e-1

DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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SIO_000300: -1.317e0

VQSLOD
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SIO_000300: 1.29e0

MQ
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SIO_000300: 4.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.634395e6

ReadPosRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -1.47e0

MQRankSum
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SIO_000300: -8.3e-2

FS
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SIO_000300: 2.247e0

MQ
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SIO_000300: 4.825e1

BaseQRankSum
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SIO_000300: -2.91e-1

InbreedingCoeff
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SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.163e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.47e0

FS
type: SiteQuality
SIO_000300: 2.247e0

DP
type: SiteQuality
SIO_000300: 2.634395e6

MQRankSum
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SIO_000300: -8.3e-2

QD
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SIO_000300: 1.163e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.91e-1

InbreedingCoeff
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SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.62e-1

MQ
type: SiteQuality
SIO_000300: 4.825e1

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.885170225043277e-4
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

FS
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
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SIO_000300: 1.62e0

ClippingRankSum
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SIO_000300: -1.382e0

VQSLOD
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SIO_000300: -1.493e0

QD
type: SiteQuality
SIO_000300: 1.02e1

MQ
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SIO_000300: 4.71e1

DP
type: SiteQuality
SIO_000300: 2.633882e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

GenotypeDepth
all individuals: 868
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1800
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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DP
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SIO_000300: 2.633154e6

ClippingRankSum
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SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 5.98e-1

BaseQRankSum
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SIO_000300: 5.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.321e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 4.445e1

QD
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FS
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SIO_000300: 2.143e0

MQRankSum
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BaseQRankSum
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DP
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SIO_000300: 2.632874e6

InbreedingCoeff
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SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 94
allele frequency: 9.041939207387457e-3
allele num: 10396
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.494678778067572e-5
allele num: 66714
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 1.156336725254394e-4
allele num: 8648
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Other
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South Asian
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allele frequency: 0.0e0
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African
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66682
num of homozygotes: 0

Other
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Latino
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European (Finnish)
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num of homozygotes: 0

South Asian
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FS
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VQSLOD
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QD
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.192717364379489e-5
allele num: 16148
num of homozygotes: 0

Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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QD
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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QD
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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Latino
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Other
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European (Non-Finnish)
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BaseQRankSum
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QD
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MQ
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VQSLOD
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MQRankSum
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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East Asian
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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DP
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MQRankSum
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QD
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MQ
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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Other
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MQ
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BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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African
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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QD
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MQ
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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Other
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African
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South Asian
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European (Non-Finnish)
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Latino
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FS
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DP
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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QD
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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South Asian
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East Asian
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European (Finnish)
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Latino
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African
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ClippingRankSum
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DP
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MQ
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.642525533890436e-4
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.616338e6

ClippingRankSum
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MQRankSum
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QD
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SIO_000300: 1.052e1

FS
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SIO_000300: 4.67e-1

MQ
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SIO_000300: 4.056e1

BaseQRankSum
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SIO_000300: 2.45e0

InbreedingCoeff
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SIO_000300: 5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.761e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.492663290481755e-5
allele num: 15402
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

MQRankSum
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SIO_000300: 1.83e0

MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 7.0e-3

FS
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SIO_000300: 9.130000000000001e0

QD
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SIO_000300: 4.02e0

DP
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SIO_000300: 2.603602e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 350
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.130000000000001e0

ReadPosRankSum
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SIO_000300: 9.340000000000001e-1

InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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SIO_000300: 3.94e1

QD
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SIO_000300: 4.02e0

ClippingRankSum
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SIO_000300: -1.161e0

DP
type: SiteQuality
SIO_000300: 2.603602e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -1.161e0

VQSLOD
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MQRankSum
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FS
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SIO_000300: 9.130000000000001e0

BaseQRankSum
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SIO_000300: -3.182e0

DP
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SIO_000300: 2.603602e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 3.94e1

QD
type: SiteQuality
SIO_000300: 4.02e0

GenotypeDepth
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 181

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3149
bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 6
allele frequency: 3.969829297340214e-4
allele num: 15114
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.79896013864818e-4
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 163
allele frequency: 2.453636801541426e-3
allele num: 66432
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.923406743324888e-4
allele num: 10262
num of homozygotes: 0

European (Finnish)
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allele count: 11
allele frequency: 1.663138796492289e-3
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.248e1

QD
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 9.8e-1

MQRankSum
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SIO_000300: 4.05e-1

InbreedingCoeff
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SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.655828516377649e-4
allele num: 66432
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.323276432446738e-4
allele num: 15114
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: -5.3e-2

VQSLOD
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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MQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 1
allele frequency: 6.632179334129194e-5
allele num: 15078
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
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allele frequency: 6.651589729945457e-5
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QD
type: SiteQuality
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DP
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -5.718e0

MQ
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SIO_000300: 4.229e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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SIO_000300: 2.76e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66406
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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East Asian
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South Asian
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allele num: 15016
num of homozygotes: 0

Other
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num of homozygotes: 0

MQRankSum
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SIO_000300: 5.9e-2

FS
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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SIO_000300: -2.329e0

ClippingRankSum
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SIO_000300: -4.97e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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DP
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

BaseQRankSum
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SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 4.411e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506205566935775e-5
allele num: 66392
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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African
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South Asian
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FS
type: SiteQuality
SIO_000300: 1.2402e1

DP
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MQ
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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European (Non-Finnish)
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South Asian
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African
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allele num: 10124
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MQ
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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East Asian
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Latino
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Other
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European (Non-Finnish)
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South Asian
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MQ
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VQSLOD
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MQRankSum
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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African
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

DP
type: SiteQuality
SIO_000300: 5.881385e6

MQ
type: SiteQuality
SIO_000300: 5.187e1

QD
type: SiteQuality
SIO_000300: 7.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

GenotypeDepth
all individuals: 2685
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54276
bin: 9.75e1
variant carriers: 111

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.884060757546626e-4
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 104
allele frequency: 1.559080142715798e-3
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.187e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

DP
type: SiteQuality
SIO_000300: 5.881385e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

QD
type: SiteQuality
SIO_000300: 7.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeDepth
all individuals: 3165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 154
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GenotypeQuality
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GenotypeQuality
all individuals: 803
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 408
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variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 54272
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 655
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.034e1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

DP
type: SiteQuality
SIO_000300: 5.882033e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 4.989e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.655e0

GenotypeDepth
all individuals: 2971
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
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variant carriers: 0

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 826
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 1958
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 54271
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 413
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090875867949811e-5
allele num: 16418
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.415e0

VQSLOD
type: SiteQuality
SIO_000300: -1.639e0

QD
type: SiteQuality
SIO_000300: 7.56e0

MQ
type: SiteQuality
SIO_000300: 5.181e1

MQRankSum
type: SiteQuality
SIO_000300: -1.031e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.708e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.05e-1

DP
type: SiteQuality
SIO_000300: 5.882532e6

GenotypeDepth
all individuals: 2913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
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variant carriers: 0

GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 660
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54274
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 457
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.512e0

FS
type: SiteQuality
SIO_000300: 1.049e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.6e-1

DP
type: SiteQuality
SIO_000300: 5.884259e6

VQSLOD
type: SiteQuality
SIO_000300: -1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.149e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 5.28e0

GenotypeDepth
all individuals: 3166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 857
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variant carriers: 0

GenotypeQuality
all individuals: 664
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variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
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variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54277
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 6.671e0

MQRankSum
type: SiteQuality
SIO_000300: -1.777e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.887684e6

ReadPosRankSum
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SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -2.447e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQ
type: SiteQuality
SIO_000300: 5.34e1

QD
type: SiteQuality
SIO_000300: 3.22e0

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 46
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2423
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54277
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 415
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.447e0

ClippingRankSum
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SIO_000300: -1.15e-1

BaseQRankSum
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SIO_000300: 3.33e0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.777e0

QD
type: SiteQuality
SIO_000300: 3.22e0

DP
type: SiteQuality
SIO_000300: 5.887684e6

MQ
type: SiteQuality
SIO_000300: 5.34e1

FS
type: SiteQuality
SIO_000300: 6.671e0

GenotypeDepth
all individuals: 1521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 468
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2429
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 415
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GenotypeQuality
all individuals: 662
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 6.75e1
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GenotypeQuality
all individuals: 22
bin: 4.25e1
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GenotypeQuality
all individuals: 678
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54276
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.16e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.887903e6

MQ
type: SiteQuality
SIO_000300: 5.242e1

FS
type: SiteQuality
SIO_000300: 7.857e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 4.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

GenotypeDepth
all individuals: 3166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54276
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.888049e6

QD
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.042e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.185e1

GenotypeDepth
all individuals: 1390
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54273
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2503
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.889008e6

VQSLOD
type: SiteQuality
SIO_000300: -5.033e0

MQ
type: SiteQuality
SIO_000300: 5.183e1

QD
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: -5.381e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

FS
type: SiteQuality
SIO_000300: 1.128e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

GenotypeDepth
all individuals: 3166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54273
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.183e1

FS
type: SiteQuality
SIO_000300: 1.128e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

QD
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: -5.381e0

DP
type: SiteQuality
SIO_000300: 5.889008e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.033e0

GenotypeDepth
all individuals: 2913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 7.75e1
variant carriers: 0