17-6663913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663913
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663913
    reference: chr 17
allele count: 1
allele frequency: 8.705947903607744e-6
allele num: 114864
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.414C>T
  hgvsp: ENST00000361842.3:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.512C>T
  hgvsp: ENSP00000460315.1:p.Ser171Leu
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.414C>T
  hgvsp: ENST00000438512.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.414C>T
  hgvsp: ENST00000574962.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.357C>T
  hgvsp: ENST00000346752.4:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.357C>T
  hgvsp: ENST00000572546.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*206C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.357C>T
  hgvsp: ENST00000571673.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.414C>T
  hgvsp: ENST00000441631.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.414C>T
  hgvsp: ENST00000576724.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*433C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1561C>T
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser171Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

17-6663914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663914
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663914
    reference: chr 17
allele count: 171
allele frequency: 1.491261729514773e-3
allele num: 114668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*207G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.358G>A
  hgvsp: ENSP00000341029.4:p.Gly120Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.415G>A
  hgvsp: ENSP00000354822.3:p.Gly139Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.415G>A
  hgvsp: ENSP00000413199.1:p.Gly139Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.415G>A
  hgvsp: ENSP00000406233.1:p.Gly139Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.513G>A
  hgvsp: ENST00000574907.1:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.415G>A
  hgvsp: ENSP00000458229.1:p.Gly139Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.358G>A
  hgvsp: ENSP00000461698.1:p.Gly120Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*434G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.415G>A
  hgvsp: ENSP00000458321.1:p.Gly139Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.358G>A
  hgvsp: ENSP00000461196.1:p.Gly120Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1560G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21188
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21000
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Gly139Arg
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-6663916-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663916
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663916
    reference: chr 17
allele count: 1
allele frequency: 8.755034144633164e-6
allele num: 114220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.417G>A
  hgvsp: ENST00000441631.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*436G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.417G>A
  hgvsp: ENST00000576724.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.360G>A
  hgvsp: ENST00000571673.1:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.417G>A
  hgvsp: ENST00000361842.3:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.417G>A
  hgvsp: ENST00000574962.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.417G>A
  hgvsp: ENST00000438512.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.515G>A
  hgvsp: ENSP00000460315.1:p.Gly172Glu
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.360G>A
  hgvsp: ENST00000572546.1:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.360G>A
  hgvsp: ENST00000346752.4:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*209G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1558G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly172Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-6663935-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663935
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663935
    reference: chr 17
allele count: 2
allele frequency: 1.825117263784198e-5
allele num: 109582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.421+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*440+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.421+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.364+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.421+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.519+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.364+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*213+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.421+15T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1539T>C
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12954
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

17-6663937-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663937
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663937
    reference: chr 17
allele count: 1
allele frequency: 9.190331770976933e-6
allele num: 108810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.364+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.519+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.421+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.421+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*213+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.421+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1537G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*440+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.421+17G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.364+17G>C
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-6663941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663941
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663941
    reference: chr 17
allele count: 5
allele frequency: 4.634349800722958e-5
allele num: 107890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*213+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1533G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.519+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.421+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*440+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.364+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.364+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.421+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.421+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.421+21G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15601
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13857
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-6663945-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663945
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663945
    reference: chr 17
allele count: 1
allele frequency: 9.360841726888082e-6
allele num: 106828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1529G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.421+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.421+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.421+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.519+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.364+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.364+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*440+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.421+25G>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*213+25G>T
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10771
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

17-6663951-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663951
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663951
    reference: chr 17
allele count: 2
allele frequency: 1.910730663405686e-5
allele num: 104672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*440+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.421+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1523C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.421+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.364+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.364+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.519+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.421+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*213+31C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.421+31C>T
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10649
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-6663952-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663952
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663952
    reference: chr 17
allele count: 2
allele frequency: 1.918943813325146e-5
allele num: 104224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*213+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.421+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.364+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.421+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.421+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*440+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.519+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1522G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.421+32G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.364+32G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18297
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

17-6663970-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6663970
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6663970
    reference: chr 17
allele count: 3
allele frequency: 3.048222886057428e-5
allele num: 98418
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.421+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.364+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.364+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.519+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.421+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.421+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*213+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.421+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*440+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+50T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-1504T>C
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14853
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17220
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10021
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-6665166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665166
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665166
    reference: chr 17
allele count: 151
allele frequency: 1.236083824492469e-2
allele num: 12216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-308G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.130G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1246G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-308G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.422-39G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1246G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-308G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-308G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-308G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.422-39G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.365-39G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-308G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*214-39G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6279
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 3
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-6665217-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665217
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665217
    reference: chr 17
allele count: 159
allele frequency: 1.225716928769658e-2
allele num: 12972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1297A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-257A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*226A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-257A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1297A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.377A>T
  hgvsp: ENSP00000461698.1:p.Asp126Val
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.434A>T
  hgvsp: ENSP00000406233.1:p.Asp145Val
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.181A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-257A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.434A>T
  hgvsp: ENSP00000458321.1:p.Asp145Val
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-257A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-257A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-257A>T
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Asp145Val
num of homozygotes: 3
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

17-6665222-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665222
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665222
    reference: chr 17
allele count: 1
allele frequency: 7.668711656441718e-5
allele num: 13040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-252G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-252G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1302G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-252G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.439G>C
  hgvsp: ENSP00000406233.1:p.Gly147Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*231G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-252G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.382G>C
  hgvsp: ENSP00000461698.1:p.Gly128Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-252G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.186G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.439G>C
  hgvsp: ENSP00000458321.1:p.Gly147Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-252G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1302G>C
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly147Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

17-6665242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665242
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665242
    reference: chr 17
allele count: 1
allele frequency: 7.403020432336393e-5
allele num: 13508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.459G>A
  hgvsp: ENST00000438512.1:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-232G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1322G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.402G>A
  hgvsp: ENST00000572546.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.459G>A
  hgvsp: ENST00000576724.1:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.206G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-232G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-232G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-232G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-232G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1322G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*251G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-232G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr153Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

17-6665263-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665263
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665263
    reference: chr 17
allele count: 1
allele frequency: 6.953135864274787e-5
allele num: 14382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-211A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1343A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.480A>G
  hgvsp: ENST00000438512.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.423A>G
  hgvsp: ENST00000572546.1:c.423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.480A>G
  hgvsp: ENST00000576724.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-211A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-211A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1343A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*272A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.227A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-211A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-211A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-211A>G
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala160Ala
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

17-6665273-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665273
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665273
    reference: chr 17
allele count: 2
allele frequency: 1.349892008639309e-4
allele num: 14816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-201C>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1353C>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-201C>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.433C>G
  hgvsp: ENSP00000461698.1:p.Pro145Ala
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.237C>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-201C>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-201C>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000406233
  ensembl transcript: ENST00000438512
  gene symbol: XAF1
  hgvsc: ENST00000438512.1:c.490C>G
  hgvsp: ENSP00000406233.1:p.Pro164Ala
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-201C>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.490C>G
  hgvsp: ENSP00000458321.1:p.Pro164Ala
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1353C>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-201C>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*282C>G
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro164Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

17-6665285-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665285
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665285
    reference: chr 17
allele count: 1
allele frequency: 6.435834727764191e-5
allele num: 15538
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-189T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-189T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1365T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*7T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1365T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.249T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-189T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-189T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-189T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*7T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*294T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-189T>C
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-6665292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665292
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665292
    reference: chr 17
allele count: 1
allele frequency: 6.252344629235963e-5
allele num: 15994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*14G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-182G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*301G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-182G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1372G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*14G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-182G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-182G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-182G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.256G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1372G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-182G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30107
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

17-6665297-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665297
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665297
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 16306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-177T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-177T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*306T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*19T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1377T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-177T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.261T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*19T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1377T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-177T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-177T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-177T>G
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-6665299-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665299
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665299
    reference: chr 17
allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-175C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-175C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-175C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.263C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-175C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1379C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1379C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*308C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-175C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-175C>T
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

17-6665300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665300
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665300
    reference: chr 17
allele count: 2
allele frequency: 1.205836247437598e-4
allele num: 16586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1380G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-174G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-174G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.264G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-174G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*309G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1380G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-174G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-174G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-174G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/17-6665331-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665331
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665331
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 19792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-143C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*53C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-143C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.295C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*340C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-143C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1411C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-143C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*53C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-143C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1411C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-143C>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14046
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-6665332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665332
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665332
    reference: chr 17
allele count: 3
allele frequency: 1.488981536628946e-4
allele num: 20148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-142G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*341G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-142G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*54G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-142G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-142G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-142G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*54G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1412G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-142G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.296G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1412G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14817
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

17-6665337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665337
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665337
    reference: chr 17
allele count: 3
allele frequency: 1.443973815941471e-4
allele num: 20776
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-137C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*59C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-137C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-137C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.301C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1417C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*346C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-137C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1417C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-137C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-137C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*59C>T
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17295
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

17-6665337-CGCAGGAAAGTCAAGACCAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665337
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665318
    reference: chr 17
allele count: 1
allele frequency: 4.813246053138236e-5
allele num: 20776
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*65_*78+5delAAAGTCAAGACCAGGCAGG
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: CGCAGGAAAGTCAAGACCAG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

17-6665338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665338
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665338
    reference: chr 17
allele count: 11
allele frequency: 5.119612771106768e-4
allele num: 21486
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-136G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*347G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1418G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-136G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-136G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.302G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-136G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-136G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1418G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-136G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18273
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

17-6665342-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665342
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665342
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 22636
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-132G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-132G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1422G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*64G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*64G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-132G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-132G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-132G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.306G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*351G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1422G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-132G>C
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21384
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/17-6665343-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665343
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665343
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 22898
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*65A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.307A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-131A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-131A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-131A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1423A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*65A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-131A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-131A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-131A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460632
  ensembl transcript: ENST00000575147
  gene symbol: XAF1
  hgvsc: ENST00000575147.1:c.*352A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1423A>C
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22071
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-6665348-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665348
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665348
    reference: chr 17
allele count: 1
allele frequency: 4.210526315789474e-5
allele num: 23750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-126C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.312C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1428C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-126C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1428C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-126C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*70C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-126C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*70C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-126C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-126C>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-6665353-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665353
    reference: chr 17
allele count: 1
allele frequency: 4.016386858382199e-5
allele num: 24898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-121C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1433C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-121C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-121C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-121C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-121C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1433C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-121C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*75C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.317C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*75C>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20080
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-6665354-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665354
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665354
    reference: chr 17
allele count: 1
allele frequency: 3.967309370784734e-5
allele num: 25206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1434C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-120C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1434C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-120C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-120C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*76C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-120C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.318C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-120C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*76C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-120C>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27483
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*76C>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

17-6665364-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665364
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665365
    reference: chr 17
allele count: 6
allele frequency: 2.042066571370227e-4
allele num: 29382
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+14dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-104dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+14dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-104dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-104dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-104dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-104dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1450dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.334dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1450dupG
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-104dupG
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-6665364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665364
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665364
    reference: chr 17
allele count: 1
allele frequency: 3.403444285617044e-5
allele num: 29382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+8C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.328C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1444C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-110C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-110C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-110C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-110C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+8C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-110C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-110C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1444C>T
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*78+8C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

17-6665369-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665369
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665369
    reference: chr 17
allele count: 7
allele frequency: 2.04990043340752e-4
allele num: 34148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-105G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.333G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-105G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-105G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1449G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-105G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-105G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+13G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+13G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1449G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-105G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33776
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-6665370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665370
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665370
    reference: chr 17
allele count: 1
allele frequency: 2.89234685023428e-5
allele num: 34574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-104G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1450G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-104G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+14G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.334G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-104G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+14G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-104G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-104G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1450G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-104G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-6665372-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665372
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665372
    reference: chr 17
allele count: 2
allele frequency: 5.541701302299806e-5
allele num: 36090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.336A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-102A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-102A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-102A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1452A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1452A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-102A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-102A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-102A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+16A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+16A>G
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-6665376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665376
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665376
    reference: chr 17
allele count: 5
allele frequency: 1.313370107696349e-4
allele num: 38070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-98C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-98C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-98C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.340C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1456C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1456C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-98C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+20C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+20C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-98C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-98C>T
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

17-6665377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665377
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665377
    reference: chr 17
allele count: 2
allele frequency: 4.985541928407618e-5
allele num: 40116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-97G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-97G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-97G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.341G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-97G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1457G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1457G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-97G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+21G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-97G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-6665383-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665383
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665383
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 46962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-91A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-91A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1463A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-91A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+27A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-91A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.347A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-91A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+27A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1463A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-91A>G
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33710
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

17-6665384-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665384
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665384
    reference: chr 17
allele count: 1
allele frequency: 2.091000334560053e-5
allele num: 47824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1464T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-90T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-90T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+28T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-90T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1464T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-90T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+28T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.348T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-90T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-90T>C
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-6665389-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665389
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665389
    reference: chr 17
allele count: 11
allele frequency: 2.065029661335136e-4
allele num: 53268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-85A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-85A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-85A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-85A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1469A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.353A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1469A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*78+33A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-85A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*78+33A>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-85A>C
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31674
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12966
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-6665427-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665427
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665427
    reference: chr 17
allele count: 1
allele frequency: 8.457517887650332e-6
allele num: 118238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1507C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-47C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1507C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-47C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-47C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-47C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-47C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.391C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-47C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-47C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-47C>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-6665428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665428
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665428
    reference: chr 17
allele count: 1
allele frequency: 8.458376330079678e-6
allele num: 118226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1508G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-46G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1508G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-46G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-46G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-46G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.392G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-46G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-46G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-46G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-46G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15281
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

17-6665434-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665434
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665434
    reference: chr 17
allele count: 4
allele frequency: 3.373819163292847e-5
allele num: 118560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-40A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.398A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-40A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-40A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1514A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-40A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-40A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-40A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-40A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-40A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1514A>G
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

17-6665435-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665435
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665435
    reference: chr 17
allele count: 32
allele frequency: 2.699191929416131e-4
allele num: 118554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-39A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-39A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-39A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-39A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-39A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1515A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-39A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-39A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-39A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.399A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1515A>G
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24342
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16136
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-6665436-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665436
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665436
    reference: chr 17
allele count: 1
allele frequency: 8.443663874628478e-6
allele num: 118432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-38G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-38G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-38G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1516G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.400G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-38G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-38G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-38G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-38G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1516G>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-38G>C
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-6665438-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665438
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665438
    reference: chr 17
allele count: 1
allele frequency: 8.429428821903027e-6
allele num: 118632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-36A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-36A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-36A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-36A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-36A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.402A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1518A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1518A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-36A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-36A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-36A>T
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-6665440-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665440
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665440
    reference: chr 17
allele count: 1
allele frequency: 8.426587569098018e-6
allele num: 118672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-34A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.404A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-34A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1520A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-34A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-34A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-34A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-34A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1520A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-34A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-34A>T
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-6665443-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665443
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665443
    reference: chr 17
allele count: 1
allele frequency: 8.429428821903027e-6
allele num: 118632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-31C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-31C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-31C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-31C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-31C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1523C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-31C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.407C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1523C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-31C>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-31C>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

17-6665450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665450
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665450
    reference: chr 17
allele count: 4
allele frequency: 3.365813432961411e-5
allele num: 118842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-24G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.414G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1530G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-24G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-24G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-24G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-24G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-24G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-24G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-24G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1530G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17657
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ

17-6665454-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665454
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665454
    reference: chr 17
allele count: 7
allele frequency: 5.876920493661322e-5
allele num: 119110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-20T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-20T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-20T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.418T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-20T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-20T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-20T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-20T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1534T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1534T>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-20T>G
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28251
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-6665455-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665455
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665455
    reference: chr 17
allele count: 25
allele frequency: 2.098265992983399e-4
allele num: 119146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-19T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-19T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-19T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-19T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.419T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1535T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-19T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-19T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1535T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-19T>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-19T>A
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28479
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18003
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-6665458-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665458
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665458
    reference: chr 17
allele count: 1
allele frequency: 8.38447865311735e-6
allele num: 119268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.422T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1538T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.422-16T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*79-16T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.422-16T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.169-16T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*79-16T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*441-16T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.520-16T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.365-16T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1538T>C
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-6665483-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665483
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665483
    reference: chr 17
allele count: 9
allele frequency: 7.486275162202629e-5
allele num: 120220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.374T>C
  hgvsp: ENSP00000341029.4:p.Ile125Thr
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.431T>C
  hgvsp: ENSP00000354822.3:p.Ile144Thr
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*88T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.447T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*88T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.529T>C
  hgvsp: ENSP00000460315.1:p.Phe177Leu
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1563T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*450T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.431T>C
  hgvsp: ENSP00000413199.1:p.Ile144Thr
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.178T>C
  hgvsp: ENSP00000459543.1:p.Phe60Leu
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1563T>C
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile144Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

17-6665487-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665487
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665487
    reference: chr 17
allele count: 174
allele frequency: 1.446576435768681e-3
allele num: 120284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.435A>G
  hgvsp: ENST00000441631.1:c.435A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*92A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*454A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.378A>G
  hgvsp: ENST00000346752.4:c.378A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*92A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.451A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1567A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.182A>G
  hgvsp: ENSP00000459543.1:p.Gln61Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.533A>G
  hgvsp: ENSP00000460315.1:p.Gln178Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.435A>G
  hgvsp: ENST00000361842.3:c.435A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1567A>G
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19749
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 31519
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
hgvs: p.Gln61Arg
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

17-6665488-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665488
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665488
    reference: chr 17
allele count: 3
allele frequency: 2.493475406020912e-5
allele num: 120314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*93G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*455G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.436G>A
  hgvsp: ENSP00000413199.1:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.452G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.534G>A
  hgvsp: ENST00000574907.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.436G>A
  hgvsp: ENSP00000354822.3:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.379G>A
  hgvsp: ENSP00000341029.4:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.183G>A
  hgvsp: ENST00000571217.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*93G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1568G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1568G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala146Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

17-6665490-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665490
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665490
    reference: chr 17
allele count: 1
allele frequency: 8.307441806370146e-6
allele num: 120374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1570T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*95T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.185T>C
  hgvsp: ENSP00000459543.1:p.Leu62Pro
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.454T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.438T>C
  hgvsp: ENST00000441631.1:c.438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1570T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*95T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*457T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.536T>C
  hgvsp: ENSP00000460315.1:p.Leu179Pro
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.438T>C
  hgvsp: ENST00000361842.3:c.438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.381T>C
  hgvsp: ENST00000346752.4:c.381T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu62Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-6665498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665498
    reference: chr 17
allele count: 3
allele frequency: 2.492025518341308e-5
allele num: 120384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*103G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.193G>A
  hgvsp: ENSP00000459543.1:p.Gly65Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.389G>A
  hgvsp: ENSP00000341029.4:p.Arg130Lys
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.446G>A
  hgvsp: ENSP00000354822.3:p.Arg149Lys
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.446G>A
  hgvsp: ENSP00000413199.1:p.Arg149Lys
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1578G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1578G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.544G>A
  hgvsp: ENSP00000460315.1:p.Gly182Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.462G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*103G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*465G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg149Lys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-6665509-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665509
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665509
    reference: chr 17
allele count: 10
allele frequency: 8.310893919750008e-5
allele num: 120324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*114T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1589T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.555T>C
  hgvsp: ENST00000574907.1:c.555T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461698
  ensembl transcript: ENST00000572546
  gene symbol: XAF1
  hgvsc: ENST00000572546.1:c.*114T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.473T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.457T>C
  hgvsp: ENSP00000354822.3:p.Cys153Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1589T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.457T>C
  hgvsp: ENSP00000413199.1:p.Cys153Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*476T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.400T>C
  hgvsp: ENSP00000341029.4:p.Cys134Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.204T>C
  hgvsp: ENST00000571217.1:c.204T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31512
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys153Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

17-6665512-CATT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665512
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665509
    reference: chr 17
allele count: 1
allele frequency: 8.312413758707254e-6
allele num: 120302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.464_466delATT
  hgvsp: ENSP00000413199.1:p.Tyr155del
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.464_466delATT
  hgvsp: ENSP00000354822.3:p.Tyr155del
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1596_364+1598delATT
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.211_213delATT
  hgvsp: ENSP00000459543.1:p.Ile71del
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*483_*485delATT
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.407_409delATT
  hgvsp: ENSP00000341029.4:p.Tyr136del
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*121_*123delATT
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.562_564delATT
  hgvsp: ENSP00000460315.1:p.Ile188del
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.480_482delATT
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1596_421+1598delATT
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr155del
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: CATT
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

17-6665518-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665518
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665518
    reference: chr 17
allele count: 2
allele frequency: 1.666388935177471e-5
allele num: 120020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.482T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.466T>C
  hgvsp: ENSP00000413199.1:p.Cys156Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.466T>C
  hgvsp: ENSP00000354822.3:p.Cys156Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.409T>C
  hgvsp: ENSP00000341029.4:p.Cys137Arg
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*485T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.213T>C
  hgvsp: ENST00000571217.1:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1598T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.564T>C
  hgvsp: ENST00000574907.1:c.564T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*123T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1598T>C
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys156Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

17-6665523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665523
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665523
    reference: chr 17
allele count: 2
allele frequency: 1.672156915204923e-5
allele num: 119606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*128C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.414C>T
  hgvsp: ENST00000346752.4:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000460315
  ensembl transcript: ENST00000574907
  gene symbol: XAF1
  hgvsc: ENST00000574907.1:c.569C>T
  hgvsp: ENSP00000460315.1:p.Thr190Ile
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1603C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.487C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*490C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.471C>T
  hgvsp: ENST00000441631.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.471C>T
  hgvsp: ENST00000361842.3:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.218C>T
  hgvsp: ENSP00000459543.1:p.Thr73Ile
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1603C>T
  variant of: http://identifiers.org/hgnc/30932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr190Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

17-6665526-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665526
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665526
    reference: chr 17
allele count: 1
allele frequency: 8.361064196250898e-6
allele num: 119602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.474A>T
  hgvsp: ENSP00000413199.1:p.Gln158His
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.221A>T
  hgvsp: ENSP00000459543.1:p.Lys74Ile
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1606A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*131A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*493A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.474A>T
  hgvsp: ENSP00000354822.3:p.Gln158His
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.490A>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.417A>T
  hgvsp: ENSP00000341029.4:p.Gln139His
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1606A>T
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30559
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln158His
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

17-6665553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665553
    reference: chr 17
allele count: 3
allele frequency: 2.648211574450055e-5
allele num: 113284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.501C>T
  hgvsp: ENST00000441631.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*520C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.501C>T
  hgvsp: ENST00000361842.3:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1633C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*158C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.517C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1633C>T
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.444C>T
  hgvsp: ENST00000346752.4:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23052
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18625
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His167His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

17-6665556-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665556
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665556
    reference: chr 17
allele count: 1
allele frequency: 8.970057946574335e-6
allele num: 111482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*523T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.*26T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.504T>C
  hgvsp: ENST00000361842.3:c.504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.447T>C
  hgvsp: ENST00000346752.4:c.447T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1636T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.520T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.504T>C
  hgvsp: ENST00000441631.1:c.504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*161T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1636T>C
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His168His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS

17-6665557-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665557
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665557
    reference: chr 17
allele count: 2
allele frequency: 1.793850679869408e-5
allele num: 111492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.*27A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*524A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*162A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1637A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.505A>G
  hgvsp: ENSP00000354822.3:p.Met169Val
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.448A>G
  hgvsp: ENSP00000341029.4:p.Met150Val
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.505A>G
  hgvsp: ENSP00000413199.1:p.Met169Val
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.521A>G
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1637A>G
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17791
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20569
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met169Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

17-6665558-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665558
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665558
    reference: chr 17
allele count: 1
allele frequency: 9.013068949977467e-6
allele num: 110950
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.506T>C
  hgvsp: ENSP00000354822.3:p.Met169Thr
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.*28T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.506T>C
  hgvsp: ENSP00000413199.1:p.Met169Thr
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.522T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.449T>C
  hgvsp: ENSP00000341029.4:p.Met150Thr
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1638T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*525T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*163T>C
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1638T>C
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17494
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met169Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-6665560-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6665560
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 6665560
    reference: chr 17
allele count: 1
allele frequency: 9.094050672050345e-6
allele num: 109962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458229
  ensembl transcript: ENST00000574962
  gene symbol: XAF1
  hgvsc: ENST00000574962.1:c.421+1640G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461750
  ensembl transcript: ENST00000575369
  gene symbol: XAF1
  hgvsc: ENST00000575369.1:c.*526+1G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000413199
  ensembl transcript: ENST00000441631
  gene symbol: XAF1
  hgvsc: ENST00000441631.1:c.507+1G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000341029
  ensembl transcript: ENST00000346752
  gene symbol: XAF1
  hgvsc: ENST00000346752.4:c.450+1G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl transcript: ENST00000573518
  gene symbol: XAF1
  hgvsc: ENST00000573518.1:n.523+1G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000458321
  ensembl transcript: ENST00000576724
  gene symbol: XAF1
  hgvsc: ENST00000576724.1:c.*164+1G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000459543
  ensembl transcript: ENST00000571217
  gene symbol: XAF1
  hgvsc: ENST00000571217.1:c.*29+1G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000354822
  ensembl transcript: ENST00000361842
  gene symbol: XAF1
  hgvsc: ENST00000361842.3:c.507+1G>A
  variant of: http://identifiers.org/hgnc/30932
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132530
  ensembl protein: ENSP00000461196
  ensembl transcript: ENST00000571673
  gene symbol: XAF1
  hgvsc: ENST00000571673.1:c.364+1640G>A
  variant of: http://identifiers.org/hgnc/30932
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
hgvs: c.507+1G>A
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 268
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21369
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555790652809758e-5
allele num: 64276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 5.91e0

FS
type: SiteQuality
SIO_000300: 6.97e0

DP
type: SiteQuality
SIO_000300: 1.549051e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.585e0

GenotypeDepth
all individuals: 5433
bin: 1.25e1
variant carriers: 12

GenotypeDepth
all individuals: 958
bin: 3.75e1
variant carriers: 20

GenotypeDepth
all individuals: 635
bin: 9.75e1
variant carriers: 8

GenotypeDepth
all individuals: 113
bin: 6.75e1
variant carriers: 4

GenotypeDepth
all individuals: 4952
bin: 3.25e1
variant carriers: 19

GenotypeQuality
all individuals: 532
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6338
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1113
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2341
bin: 9.75e1
variant carriers: 165

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4630
bin: 6.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.51997830410414e-4
allele num: 11062
num of homozygotes: 0

African
type: Population
allele count: 166
allele frequency: 1.726648637403786e-2
allele num: 9614
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.542158e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

QD
type: SiteQuality
SIO_000300: 1.191e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

GenotypeDepth
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 929
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4818
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4541
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38828
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6815
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 309
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14086
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.064539521392314e-5
allele num: 11032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.527763e6

MQ
type: SiteQuality
SIO_000300: 5.879e1

VQSLOD
type: SiteQuality
SIO_000300: -9.853e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.142e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

GenotypeDepth
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27779
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11771
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.58102766798419e-4
allele num: 12650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

MQRankSum
type: SiteQuality
SIO_000300: -3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.1e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 7.22e0

DP
type: SiteQuality
SIO_000300: 1.37193e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

GenotypeDepth
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.617547151499466e-5
allele num: 61822
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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DP
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FS
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 61458
num of homozygotes: 0

South Asian
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 61032
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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ReadPosRankSum
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SIO_000300: 2.82e-1

InbreedingCoeff
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DP
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MQ
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QD
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.321707357581797e-5
allele num: 60210
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

Other
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Latino
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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SIO_000300: 1.66e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 2
allele frequency: 2.577984016499098e-4
allele num: 7758
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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DP
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 2
allele frequency: 3.543586109142452e-4
allele num: 5644
num of homozygotes: 0

East Asian
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Other
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Latino
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European (Non-Finnish)
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African
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South Asian
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VQSLOD
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 20

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 9.574468085106383e-3
allele num: 3760
num of homozygotes: 0

European (Finnish)
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African
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allele frequency: 3.289473684210526e-3
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East Asian
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South Asian
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allele frequency: 1.532147742818057e-2
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Other
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VQSLOD
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.481772882244952e-2
allele num: 7626
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 4.573170731707317e-3
allele num: 656
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.024390243902439e-2
allele num: 4100
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Other
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.310615989515072e-4
allele num: 7630
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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QD
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FS
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

East Asian
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Latino
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Other
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num of homozygotes: 0

European (Finnish)
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ClippingRankSum
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DP
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.297016861219196e-4
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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Latino
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African
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South Asian
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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FS
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DP
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Latino
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Other
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.94368e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.79e-2

VQSLOD
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SIO_000300: -3.758e-1

QD
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SIO_000300: 1.078e1

ReadPosRankSum
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SIO_000300: 7.27e-1

BaseQRankSum
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SIO_000300: -7.27e-1

FS
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SIO_000300: 6.631e0

MQRankSum
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SIO_000300: 7.27e-1

ClippingRankSum
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SIO_000300: -1.02e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
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DP
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SIO_000300: 3.05646e5

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.75e0

ClippingRankSum
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SIO_000300: -5.5e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -7.61e-2

VQSLOD
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SIO_000300: -8.493000000000001e-1

QD
type: SiteQuality
SIO_000300: 5.8e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576789656259855e-4
allele num: 6342
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1222
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.065e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -7.64e-2

VQSLOD
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SIO_000300: -2.341e0

MQRankSum
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SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 2.932e0

ReadPosRankSum
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SIO_000300: -1.028e0

DP
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SIO_000300: 3.1004e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4987
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.083564600678384e-4
allele num: 6486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.16324e5

MQ
type: SiteQuality
SIO_000300: 5.937e1

ClippingRankSum
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SIO_000300: 1.07e0

ReadPosRankSum
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SIO_000300: 1.2e0

VQSLOD
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SIO_000300: -2.213e0

InbreedingCoeff
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SIO_000300: -7.55e-2

QD
type: SiteQuality
SIO_000300: 1.365e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: -1.073e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 222
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 200
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.754e0

MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8720
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 200
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Latino
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allele frequency: 0.0e0
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South Asian
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allele num: 8024
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East Asian
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allele frequency: 2.865329512893983e-3
allele num: 698
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African
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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Other
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European (Finnish)
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South Asian
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African
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East Asian
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European (Non-Finnish)
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allele count: 3
allele frequency: 3.3003300330033e-4
allele num: 9090
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FS
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.240694789081886e-4
allele num: 8060
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.032e1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

InbreedingCoeff
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SIO_000300: 4.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

FS
type: SiteQuality
SIO_000300: 4.516e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 4.429e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.138731952291275e-4
allele num: 9558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.032520325203252e-3
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 8.654797230464886e-4
allele num: 8088
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
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SIO_000300: 1.3e0

QD
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SIO_000300: 1.424e1

VQSLOD
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FS
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SIO_000300: 4.59e-1

ClippingRankSum
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SIO_000300: -3.78e-1

ReadPosRankSum
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SIO_000300: 1.43e-1

InbreedingCoeff
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SIO_000300: -5.38e-2

DP
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SIO_000300: 4.53872e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.002e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.79e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ClippingRankSum
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SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

FS
type: SiteQuality
SIO_000300: 3.082e0

DP
type: SiteQuality
SIO_000300: 4.8123e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2450
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.67e-2

DP
type: SiteQuality
SIO_000300: 4.87588e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10854
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 3.915426781519186e-4
allele num: 2554
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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QD
type: SiteQuality
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MQRankSum
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SIO_000300: -6.67e-1

ReadPosRankSum
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SIO_000300: 5.33e-1

VQSLOD
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MQ
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DP
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -4.41e-2

FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.695491500369549e-4
allele num: 2706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 11502
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South Asian
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East Asian
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 8.58663918942126e-5
allele num: 11646
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African
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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DP
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Other
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East Asian
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allele count: 0
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Latino
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allele frequency: 9.881422924901185e-4
allele num: 1012
num of homozygotes: 0

South Asian
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African
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allele count: 1
allele frequency: 3.130870381966186e-4
allele num: 3194
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European (Non-Finnish)
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allele frequency: 2.867383512544803e-4
allele num: 13950
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DP
type: SiteQuality
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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MQRankSum
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SIO_000300: 1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12316
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1507
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8756
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.194244604316547e-4
allele num: 1390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

DP
type: SiteQuality
SIO_000300: 6.04821e5

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

QD
type: SiteQuality
SIO_000300: 5.7e-1

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1955
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 6.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 598
bin: 9.75e1
variant carriers: 8

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 4.854368932038835e-3
allele num: 1442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.668e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.38494e5

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 8770
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 407
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variant carriers: 0

GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
all individuals: 31128
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variant carriers: 0

GenotypeQuality
all individuals: 2023
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variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 340
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 293
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variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6639
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1981
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variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.933309600094933e-5
allele num: 16854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.03e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.188e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 6.42735e5

GenotypeQuality
all individuals: 526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
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variant carriers: 0

GenotypeQuality
all individuals: 2037
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variant carriers: 0

GenotypeQuality
all individuals: 252
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GenotypeQuality
all individuals: 1586
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variant carriers: 0

GenotypeQuality
all individuals: 584
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GenotypeQuality
all individuals: 7198
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variant carriers: 0

GenotypeQuality
all individuals: 1129
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variant carriers: 0

GenotypeQuality
all individuals: 32563
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variant carriers: 0

GenotypeQuality
all individuals: 7580
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variant carriers: 0

GenotypeQuality
all individuals: 352
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GenotypeQuality
all individuals: 764
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variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 303
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variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 2

GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 2093
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1306
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.16076058772688e-4
allele num: 9256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

DP
type: SiteQuality
SIO_000300: 6.5775e5

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

FS
type: SiteQuality
SIO_000300: 4.283e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

GenotypeQuality
all individuals: 2104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
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variant carriers: 0

GenotypeQuality
all individuals: 698
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variant carriers: 0

GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 538
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GenotypeQuality
all individuals: 1609
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variant carriers: 0

GenotypeQuality
all individuals: 33195
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variant carriers: 0

GenotypeQuality
all individuals: 842
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GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
all individuals: 7441
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6028
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1453
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
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variant carriers: 1

GenotypeQuality
all individuals: 2222
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 3

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18718
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.555555555555556e-4
allele num: 1800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 7.292173067574137e-4
allele num: 4114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.604051565377532e-4
allele num: 2172
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

DP
type: SiteQuality
SIO_000300: 6.82205e5

FS
type: SiteQuality
SIO_000300: 4.096e0

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 355
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
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GenotypeQuality
all individuals: 1254
bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.010203050813213e-4
allele num: 19798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4316
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.058e1

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e-1

DP
type: SiteQuality
SIO_000300: 6.94475e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
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GenotypeQuality
all individuals: 1913
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2569
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 702
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GenotypeQuality
all individuals: 652
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variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23540
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

DP
type: SiteQuality
SIO_000300: 7.53022e5

VQSLOD
type: SiteQuality
SIO_000300: -1.076e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -1.203e0

ClippingRankSum
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SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.119e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 708
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GenotypeQuality
all individuals: 653
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GenotypeQuality
all individuals: 1942
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variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 644
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.16181122024305e-5
allele num: 24028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2288
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.60456e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 3.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.107e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1754
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 9.75e1
variant carriers: 10

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11548
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.695218387406695e-5
allele num: 27062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3618
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 3.001200480192077e-3
allele num: 3332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

DP
type: SiteQuality
SIO_000300: 8.00582e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

GenotypeQuality
all individuals: 631
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3097
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65258
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.826125330979699e-5
allele num: 11330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 1.459015e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

QD
type: SiteQuality
SIO_000300: 7.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 2147
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variant carriers: 0

GenotypeQuality
all individuals: 1624
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 252
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variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532801961986511e-5
allele num: 65240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

FS
type: SiteQuality
SIO_000300: 2.568e0

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

QD
type: SiteQuality
SIO_000300: 1.614e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.64e-1

DP
type: SiteQuality
SIO_000300: 1.466153e6

GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34567
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variant carriers: 0

GenotypeQuality
all individuals: 1500
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variant carriers: 0

GenotypeQuality
all individuals: 253
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GenotypeQuality
all individuals: 982
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variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.677268475210477e-4
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65460
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.888e0

MQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

FS
type: SiteQuality
SIO_000300: 1.0092e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.598e-1

DP
type: SiteQuality
SIO_000300: 1.493102e6

QD
type: SiteQuality
SIO_000300: 9.59e0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
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variant carriers: 0

GenotypeQuality
all individuals: 252
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 31

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1472
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variant carriers: 0

GenotypeQuality
all individuals: 895
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 579
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 971
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variant carriers: 0

GenotypeQuality
all individuals: 327
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GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4797
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65458
num of homozygotes: 0

East Asian
type: Population
allele count: 32
allele frequency: 3.742690058479532e-3
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.903e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

QD
type: SiteQuality
SIO_000300: 1.542e1

DP
type: SiteQuality
SIO_000300: 1.498081e6

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2628
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 1458
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 904
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GenotypeQuality
all individuals: 2294
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variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 1785
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GenotypeQuality
all individuals: 248
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GenotypeQuality
all individuals: 2975
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GenotypeQuality
all individuals: 574
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GenotypeQuality
all individuals: 35599
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4761
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528911720637251e-5
allele num: 65406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3089e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.52e-1

DP
type: SiteQuality
SIO_000300: 1.50204e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.583e0

VQSLOD
type: SiteQuality
SIO_000300: -1.053e0

MQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

QD
type: SiteQuality
SIO_000300: 1.483e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 1283
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1396
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GenotypeQuality
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GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 1537
bin: 4.75e1
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GenotypeQuality
all individuals: 1011
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variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 2975
bin: 9.75e1
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GenotypeQuality
all individuals: 250
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GenotypeQuality
all individuals: 36448
bin: 6.25e1
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GenotypeQuality
all individuals: 959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4797
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526577718071627e-5
allele num: 65506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

DP
type: SiteQuality
SIO_000300: 1.507434e6

FS
type: SiteQuality
SIO_000300: 4.708e0

QD
type: SiteQuality
SIO_000300: 5.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.819e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.708e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.793527963418924e-5
allele num: 11372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.514138e6

MQRankSum
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SIO_000300: -1.548e0

VQSLOD
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SIO_000300: -1.812e0

InbreedingCoeff
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SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 5.506e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.29e-1

QD
type: SiteQuality
SIO_000300: 7.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.88e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 550
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.790483649892304e-5
allele num: 10214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.066e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e0

VQSLOD
type: SiteQuality
SIO_000300: -1.059e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.022e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 3.518e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 1.522641e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2004
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.659832246039142e-4
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.336e0

DP
type: SiteQuality
SIO_000300: 1.540938e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.304e1

VQSLOD
type: SiteQuality
SIO_000300: -1.471e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

GenotypeQuality
all individuals: 1422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2979
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4881
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.28155837498398e-4
allele num: 15606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.598784194528876e-5
allele num: 65800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.208e0

DP
type: SiteQuality
SIO_000300: 1.551514e6

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

BaseQRankSum
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SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.375e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.628811777076761e-4
allele num: 11412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.143413873733437e-3
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.554078e6

MQ
type: SiteQuality
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QD
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FS
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BaseQRankSum
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MQRankSum
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SIO_000300: 8.2e-2

VQSLOD
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517773123273533e-5
allele num: 65886
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.561157e6

ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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ClippingRankSum
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SIO_000300: 2.6e-1

VQSLOD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.822005909960021e-4
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

ClippingRankSum
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.785e0

MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.355e1

GenotypeDepth
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
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variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
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GenotypeQuality
all individuals: 244
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GenotypeQuality
all individuals: 820
bin: 2.25e1
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GenotypeQuality
all individuals: 990
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 5187
bin: 6.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 321
bin: 9.25e1
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GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 565
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GenotypeQuality
all individuals: 3091
bin: 9.75e1
variant carriers: 172

GenotypeQuality
all individuals: 47325
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 159
allele frequency: 1.535045375555126e-2
allele num: 10358
num of homozygotes: 1

Latino
type: Population
allele count: 12
allele frequency: 1.042752867570386e-3
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014227152158187e-5
allele num: 66352
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.268806419257773e-5
allele num: 15952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.612864e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.74e0

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

GenotypeDepth
all individuals: 168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
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GenotypeQuality
all individuals: 5232
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 567
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 322
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 47634
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.520523175215478e-5
allele num: 66364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.59e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

DP
type: SiteQuality
SIO_000300: 1.607707e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.821e0

VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.72e-1

FS
type: SiteQuality
SIO_000300: 2.914e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 570
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GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506432466632521e-5
allele num: 66382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.214e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

DP
type: SiteQuality
SIO_000300: 1.609104e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.513e0

QD
type: SiteQuality
SIO_000300: 7.61e0

GenotypeDepth
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 993
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variant carriers: 0

GenotypeQuality
all individuals: 729
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 556
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GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1012
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GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 5248
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GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 2935
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 48019
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GenotypeQuality
all individuals: 243
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variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 86
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.519025095652698e-5
allele num: 66386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.612223e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.012e1

GenotypeDepth
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 321
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GenotypeQuality
all individuals: 47967
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 5243
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 146
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GenotypeQuality
all individuals: 554
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 1009
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GenotypeQuality
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GenotypeQuality
all individuals: 2937
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 992
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.699014111734003e-4
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

DP
type: SiteQuality
SIO_000300: 1.612667e6

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 1.755e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1000
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 558
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GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.842e1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

FS
type: SiteQuality
SIO_000300: 5.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

QD
type: SiteQuality
SIO_000300: 1.441e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

DP
type: SiteQuality
SIO_000300: 1.61256e6

GenotypeQuality
all individuals: 1079
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 979
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742160278745645e-4
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66254
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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BaseQRankSum
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SIO_000300: -1.745e0

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

DP
type: SiteQuality
SIO_000300: 1.609225e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.255e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 318
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GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 350
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variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.60386e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.085e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 9.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.371861858034918e-5
allele num: 15694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.603815e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.414e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 7.34e0

GenotypeQuality
all individuals: 521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.76841402549512e-5
allele num: 62914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.128e0

FS
type: SiteQuality
SIO_000300: 8.39e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

MQRankSum
type: SiteQuality
SIO_000300: -3.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.490921e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 2.75e1
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GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.466029565477079e-5
allele num: 13394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.664e1

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 1.449022e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.896e1

FS
type: SiteQuality
SIO_000300: 3.039e0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9927
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variant carriers: 0

GenotypeQuality
all individuals: 228
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61904
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.492314579913446e-4
allele num: 13402
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1694e1

VQSLOD
type: SiteQuality
SIO_000300: -1.351e0

MQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

DP
type: SiteQuality
SIO_000300: 1.448344e6

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2921
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 3.25e1
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GenotypeQuality
all individuals: 1904
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 239
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GenotypeQuality
all individuals: 251
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GenotypeQuality
all individuals: 4337
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variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622849724115547e-5
allele num: 61620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 3.565e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e-1

DP
type: SiteQuality
SIO_000300: 1.436456e6

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.586e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.74e0