X-133527537-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527537
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527537
    reference: chr 0
allele count: 2
allele frequency: 2.280111725474548e-5
allele num: 87715
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.247T>G
  hgvsp: ENSP00000359835.1:p.Ser83Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.247T>G
  hgvsp: ENSP00000329097.3:p.Ser83Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.247T>G
  hgvsp: ENSP00000377831.1:p.Ser83Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.247T>G
  hgvsp: ENSP00000359836.4:p.Ser83Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.247T>G
  hgvsp: ENSP00000359839.3:p.Ser83Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.145T>G
  hgvsp: ENSP00000394480.2:p.Ser49Ala
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser83Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

X-133527556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527556
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527556
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87721
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.266G>A
  hgvsp: ENSP00000377831.1:p.Gly89Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.266G>A
  hgvsp: ENSP00000329097.3:p.Gly89Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.164G>A
  hgvsp: ENSP00000394480.2:p.Gly55Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.266G>A
  hgvsp: ENSP00000359839.3:p.Gly89Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.266G>A
  hgvsp: ENSP00000359836.4:p.Gly89Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.266G>A
  hgvsp: ENSP00000359835.1:p.Gly89Glu
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
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genotype quality: GenotypeQuality
  all individuals: 41266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3661
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly89Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-133527564-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527564
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527564
    reference: chr 0
allele count: 4
allele frequency: 4.559859556325665e-5
allele num: 87722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.274A>G
  hgvsp: ENSP00000359835.1:p.Ile92Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.274A>G
  hgvsp: ENSP00000359839.3:p.Ile92Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.274A>G
  hgvsp: ENSP00000359836.4:p.Ile92Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.274A>G
  hgvsp: ENSP00000329097.3:p.Ile92Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.274A>G
  hgvsp: ENSP00000377831.1:p.Ile92Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.172A>G
  hgvsp: ENSP00000394480.2:p.Ile58Val
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 496
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 41252
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile92Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

X-133527572-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527572
    reference: chr 0
allele count: 1
allele frequency: 1.140081857877396e-5
allele num: 87713
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.282T>C
  hgvsp: ENST00000332070.3:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.282T>C
  hgvsp: ENST00000370800.4:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.282T>C
  hgvsp: ENST00000370803.3:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.282T>C
  hgvsp: ENST00000394292.1:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.180T>C
  hgvsp: ENST00000416404.2:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.282T>C
  hgvsp: ENST00000370799.1:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys94Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-133527584-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527584
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527584
    reference: chr 0
allele count: 1
allele frequency: 1.140523956705711e-5
allele num: 87679
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.294A>G
  hgvsp: ENST00000332070.3:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.294A>G
  hgvsp: ENST00000394292.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.294A>G
  hgvsp: ENST00000370799.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.294A>G
  hgvsp: ENST00000370800.4:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.192A>G
  hgvsp: ENST00000416404.2:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.294A>G
  hgvsp: ENST00000370803.3:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr98Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-133527652-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527652
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527652
    reference: chr 0
allele count: 1
allele frequency: 1.186155196545916e-5
allele num: 84306
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.362A>T
  hgvsp: ENSP00000329097.3:p.Gln121Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.260A>T
  hgvsp: ENSP00000394480.2:p.Gln87Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.362A>T
  hgvsp: ENSP00000359835.1:p.Gln121Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.362A>T
  hgvsp: ENSP00000359839.3:p.Gln121Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.362A>T
  hgvsp: ENSP00000377831.1:p.Gln121Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.362A>T
  hgvsp: ENSP00000359836.4:p.Gln121Leu
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln121Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-133527653-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527653
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527653
    reference: chr 0
allele count: 1
allele frequency: 1.190986613310466e-5
allele num: 83964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.363A>G
  hgvsp: ENST00000370799.1:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.363A>G
  hgvsp: ENST00000394292.1:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.363A>G
  hgvsp: ENST00000370803.3:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.363A>G
  hgvsp: ENST00000370800.4:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.261A>G
  hgvsp: ENST00000416404.2:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.363A>G
  hgvsp: ENST00000332070.3:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13205
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln121Gln
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-133527659-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527659
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527659
    reference: chr 0
allele count: 1
allele frequency: 1.217997125526784e-5
allele num: 82102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.267T>G
  hgvsp: ENSP00000394480.2:p.Ile89Met
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.369T>G
  hgvsp: ENSP00000329097.3:p.Ile123Met
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.369T>G
  hgvsp: ENSP00000359835.1:p.Ile123Met
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.369T>G
  hgvsp: ENSP00000359839.3:p.Ile123Met
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.369T>G
  hgvsp: ENSP00000359836.4:p.Ile123Met
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.369T>G
  hgvsp: ENSP00000377831.1:p.Ile123Met
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile123Met
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-133527662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527662
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527662
    reference: chr 0
allele count: 2
allele frequency: 2.43923261741856e-5
allele num: 81993
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.372C>T
  hgvsp: ENST00000394292.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.372C>T
  hgvsp: ENST00000370800.4:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.372C>T
  hgvsp: ENST00000332070.3:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.372C>T
  hgvsp: ENST00000370803.3:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.372C>T
  hgvsp: ENST00000370799.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.270C>T
  hgvsp: ENST00000416404.2:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11265
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
hgvs: c.372C>T
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

X-133527672-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527672
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527672
    reference: chr 0
allele count: 650
allele frequency: 8.296742571224343e-3
allele num: 78344
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+8T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+8T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+8T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+8T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+8T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance&benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+8T>C
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 2.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 6756
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 2.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 14425
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 1.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 8810
  bin: 3.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 4.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 3.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 19580
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.25e1
  variant carriers: 5
hgvs: c.374+8T>C
num of homozygotes: 26
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

X-133527676-ACTTCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527676
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527671
    reference: chr 0
allele count: 6
allele frequency: 7.96400270776092e-5
allele num: 75339
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+16_374+20delCTCTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+16_374+20delCTCTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+16_272+20delCTCTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+16_374+20delCTCTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+16_374+20delCTCTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+16_374+20delCTCTT
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8479
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3480
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15058
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: ACTTCT
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum

X-133527682-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527682
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527683
    reference: chr 0
allele count: 1
allele frequency: 1.406153326958772e-5
allele num: 71116
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+21dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+21dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+21dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+21dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+21dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+21dupT
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16004
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10905
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

X-133527682-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527682
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527681
    reference: chr 0
allele count: 3
allele frequency: 4.218459980876314e-5
allele num: 71116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+21delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+21delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+21delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+21delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+21delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+21delT
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21025
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5191
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: CT
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

X-133527688-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527689
    reference: chr 0
allele count: 749
allele frequency: 1.52291488756049e-2
allele num: 49182
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+34dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+34dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+34dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+34dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+34dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+34dupT
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 2.75e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 11048
  bin: 7.5e0
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 1.75e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 2.25e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 1.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.25e1
  variant carriers: 285
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 17490
  bin: 2.25e1
  variant carriers: 180
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 4.75e1
  variant carriers: 157
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 135
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.25e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 8581
  bin: 7.5e0
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 5491
  bin: 6.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 10599
  bin: 2.5e0
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 3.25e1
  variant carriers: 165
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

X-133527688-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527690
    reference: chr 0
allele count: 1
allele frequency: 2.033264202350453e-5
allele num: 49182
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+33_374+34dupTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+33_272+34dupTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+33_374+34dupTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+33_374+34dupTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+33_374+34dupTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+33_374+34dupTT
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11048
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17490
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8581
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10599
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5491
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-133527688-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527687
    reference: chr 0
allele count: 160
allele frequency: 3.253222723760725e-3
allele num: 49182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+34delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+34delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+34delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+34delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+34delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+34delT
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 9.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 11048
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 4.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 17490
  bin: 2.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 10599
  bin: 2.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 5491
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 21
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: GT
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-133527693-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527693
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527693
    reference: chr 0
allele count: 1
allele frequency: 1.656397005234214e-5
allele num: 60372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+29T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+29T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+29T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+29T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+29T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+29T>C
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8879
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-133527700-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527700
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527700
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 54693
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+36A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+36A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+36A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+36A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+36A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+36A>G
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 559
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12113
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-133527703-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527703
    reference: chr 0
allele count: 1
allele frequency: 1.902804734178179e-5
allele num: 52554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+39A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+39A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+39A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+39A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+39A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+39A>T
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-133527706-ATACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527706
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527702
    reference: chr 0
allele count: 1396
allele frequency: 2.697115477501497e-2
allele num: 51759
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+44_374+47delACTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+44_374+47delACTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+44_272+47delACTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+44_374+47delACTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+44_374+47delACTT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+44_374+47delACTT
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16874
  bin: 7.5e0
  variant carriers: 576
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 1.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 2.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10221
  bin: 2.5e0
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 13844
  bin: 1.25e1
  variant carriers: 506
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 2.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 15703
  bin: 2.25e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 4.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 2.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 4022
  bin: 9.75e1
  variant carriers: 1208
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 6.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 12543
  bin: 7.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 3.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 4211
  bin: 6.25e1
  variant carriers: 12
num of homozygotes: 23
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: ATACT
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-133527708-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527708
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527708
    reference: chr 0
allele count: 1
allele frequency: 2.102253615876219e-5
allele num: 47568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+44A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+44A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+44A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+44A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+44A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+44A>T
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17027
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3818
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-133527709-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527709
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527708
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 47077
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.374+48delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.374+48delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.374+48delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.374+48delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.374+48delT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.272+48delT
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17353
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4570
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12505
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: CT
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

X-133527950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527950
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527950
    reference: chr 0
allele count: 1
allele frequency: 1.147460097075124e-5
allele num: 87149
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.386G>A
  hgvsp: ENSP00000359836.4:p.Arg129Gln
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.284G>A
  hgvsp: ENSP00000394480.2:p.Arg95Gln
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.386G>A
  hgvsp: ENSP00000359839.3:p.Arg129Gln
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.386G>A
  hgvsp: ENSP00000359835.1:p.Arg129Gln
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.386G>A
  hgvsp: ENSP00000377831.1:p.Arg129Gln
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.386G>A
  hgvsp: ENSP00000329097.3:p.Arg129Gln
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28077
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg129Gln
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-133527959-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527959
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527959
    reference: chr 0
allele count: 1
allele frequency: 1.14590853358085e-5
allele num: 87267
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.395A>G
  hgvsp: ENSP00000359839.3:p.Lys132Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.395A>G
  hgvsp: ENSP00000377831.1:p.Lys132Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.395A>G
  hgvsp: ENSP00000359836.4:p.Lys132Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.395A>G
  hgvsp: ENSP00000359835.1:p.Lys132Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.395A>G
  hgvsp: ENSP00000329097.3:p.Lys132Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.293A>G
  hgvsp: ENSP00000394480.2:p.Lys98Arg
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28726
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13931
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys132Arg
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

X-133527963-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527963
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527963
    reference: chr 0
allele count: 17
allele frequency: 1.947508906989266e-4
allele num: 87291
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.297A>G
  hgvsp: ENST00000416404.2:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.399A>G
  hgvsp: ENST00000332070.3:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.399A>G
  hgvsp: ENST00000370799.1:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.399A>G
  hgvsp: ENST00000370803.3:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.399A>G
  hgvsp: ENST00000394292.1:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.399A>G
  hgvsp: ENST00000370800.4:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28565
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys133Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

X-133527966-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527966
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527966
    reference: chr 0
allele count: 1
allele frequency: 1.145226124898361e-5
allele num: 87319
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.402T>C
  hgvsp: ENST00000370800.4:c.402T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.300T>C
  hgvsp: ENST00000416404.2:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.402T>C
  hgvsp: ENST00000370803.3:c.402T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.402T>C
  hgvsp: ENST00000332070.3:c.402T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.402T>C
  hgvsp: ENST00000394292.1:c.402T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.402T>C
  hgvsp: ENST00000370799.1:c.402T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr134Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-133527968-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527968
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527968
    reference: chr 0
allele count: 1
allele frequency: 1.145147437732608e-5
allele num: 87325
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.404C>T
  hgvsp: ENSP00000359835.1:p.Ala135Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.404C>T
  hgvsp: ENSP00000359839.3:p.Ala135Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.404C>T
  hgvsp: ENSP00000377831.1:p.Ala135Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.404C>T
  hgvsp: ENSP00000359836.4:p.Ala135Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.404C>T
  hgvsp: ENSP00000329097.3:p.Ala135Val
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.302C>T
  hgvsp: ENSP00000394480.2:p.Ala101Val
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25069
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala135Val
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

X-133527971-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527971
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527971
    reference: chr 0
allele count: 2
allele frequency: 2.2895345376285e-5
allele num: 87354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.407A>G
  hgvsp: ENSP00000377831.1:p.His136Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.407A>G
  hgvsp: ENSP00000329097.3:p.His136Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.407A>G
  hgvsp: ENSP00000359835.1:p.His136Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.305A>G
  hgvsp: ENSP00000394480.2:p.His102Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.407A>G
  hgvsp: ENSP00000359836.4:p.His136Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.407A>G
  hgvsp: ENSP00000359839.3:p.His136Arg
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11122
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
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genotype depth: GenotypeDepth
  all individuals: 7071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28807
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2337
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2761
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
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genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His136Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP

X-133527978-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527978
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527978
    reference: chr 0
allele count: 14
allele frequency: 1.60254575840478e-4
allele num: 87361
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.312C>T
  hgvsp: ENST00000416404.2:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.414C>T
  hgvsp: ENST00000394292.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.414C>T
  hgvsp: ENST00000370800.4:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.414C>T
  hgvsp: ENST00000332070.3:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.414C>T
  hgvsp: ENST00000370799.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.414C>T
  hgvsp: ENST00000370803.3:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28783
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 3188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser138Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-133527979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527979
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527979
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87359
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.415G>A
  hgvsp: ENSP00000377831.1:p.Glu139Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.415G>A
  hgvsp: ENSP00000329097.3:p.Glu139Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.415G>A
  hgvsp: ENSP00000359835.1:p.Glu139Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.415G>A
  hgvsp: ENSP00000359839.3:p.Glu139Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.313G>A
  hgvsp: ENSP00000394480.2:p.Glu105Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.415G>A
  hgvsp: ENSP00000359836.4:p.Glu139Lys
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 384
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
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genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28787
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 95
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu139Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

X-133527989-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527989
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527989
    reference: chr 0
allele count: 1
allele frequency: 1.145239240477336e-5
allele num: 87318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.418+7C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.418+7C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.418+7C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.418+7C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.316+7C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.418+7C>G
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
hgvs: c.418+7C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP

X-133527996-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527996
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527996
    reference: chr 0
allele count: 1
allele frequency: 1.145750982481467e-5
allele num: 87279
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.418+14C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.418+14C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.418+14C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.316+14C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.418+14C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.418+14C>G
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-133527999-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133527999
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133527999
    reference: chr 0
allele count: 2
allele frequency: 2.291817067161699e-5
allele num: 87267
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.418+17C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.418+17C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.316+17C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.418+17C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.418+17C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.418+17C>T
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7085
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

X-133528033-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133528033
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133528033
    reference: chr 0
allele count: 2
allele frequency: 2.307151014569659e-5
allele num: 86687
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.418+51T>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.418+51T>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.418+51T>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.316+51T>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.418+51T>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.418+51T>A
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-133547467-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547467
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547467
    reference: chr 0
allele count: 1
allele frequency: 1.160617912976869e-5
allele num: 86161
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.419-51C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.419-54C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.317-54C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.419-51C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.419-54C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.419-51C>T
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29462
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-133547471-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547471
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547472
    reference: chr 0
allele count: 1
allele frequency: 1.159931332065142e-5
allele num: 86212
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.419-49dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.419-49dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.419-46dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.419-46dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.419-46dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.317-49dupA
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7897
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 99
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genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 408
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genotype quality: GenotypeQuality
  all individuals: 662
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

X-133547477-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547477
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547477
    reference: chr 0
allele count: 3
allele frequency: 3.479067609880552e-5
allele num: 86230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.419-44T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.419-41T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.317-44T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.419-41T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.419-41T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.419-44T>C
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2622
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 6832
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 279
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genotype quality: GenotypeQuality
  all individuals: 2538
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genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-133547488-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547488
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547488
    reference: chr 0
allele count: 2
allele frequency: 2.318034306907742e-5
allele num: 86280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.419-30G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.419-30G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.419-33G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.419-33G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.419-30G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.317-33G>T
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5592
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29513
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 607
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genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

X-133547504-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547504
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547504
    reference: chr 0
allele count: 2
allele frequency: 2.313716870466561e-5
allele num: 86441
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.419-17T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.317-17T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.419-14T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.419-14T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.419-14T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.419-17T>C
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8957
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29542
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

X-133547505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547505
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547505
    reference: chr 0
allele count: 1
allele frequency: 1.156497201276773e-5
allele num: 86468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.317-16G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.419-13G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.419-16G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.419-13G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.419-13G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.419-16G>A
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 166
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 594
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genotype quality: GenotypeQuality
  all individuals: 192
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2637
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genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

X-133547505-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547505
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547505
    reference: chr 0
allele count: 2
allele frequency: 2.312994402553546e-5
allele num: 86468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.419-13G>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.317-16G>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.419-13G>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.419-16G>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.419-13G>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.419-16G>C
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 501
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1967
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 453
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24
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genotype quality: GenotypeQuality
  all individuals: 107
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1673
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

X-133547532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547532
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547532
    reference: chr 0
allele count: 1
allele frequency: 1.151065887011373e-5
allele num: 86876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.433G>A
  hgvsp: ENSP00000359835.1:p.Glu145Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.430G>A
  hgvsp: ENSP00000359839.3:p.Glu144Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.328G>A
  hgvsp: ENSP00000394480.2:p.Glu110Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.433G>A
  hgvsp: ENSP00000377831.1:p.Glu145Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.430G>A
  hgvsp: ENSP00000329097.3:p.Glu144Lys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.433G>A
  hgvsp: ENSP00000359836.4:p.Glu145Lys
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12071
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu144Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-133547559-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547559
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547559
    reference: chr 0
allele count: 1
allele frequency: 1.146986293513793e-5
allele num: 87185
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.460C>T
  hgvsp: ENSP00000359836.4:p.Pro154Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.457C>T
  hgvsp: ENSP00000329097.3:p.Pro153Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.460C>T
  hgvsp: ENSP00000377831.1:p.Pro154Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.460C>T
  hgvsp: ENSP00000359835.1:p.Pro154Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.355C>T
  hgvsp: ENSP00000394480.2:p.Pro119Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.457C>T
  hgvsp: ENSP00000359839.3:p.Pro153Ser
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro153Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

X-133547569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547569
    reference: chr 0
allele count: 1
allele frequency: 1.14622376580356e-5
allele num: 87243
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.470C>T
  hgvsp: ENSP00000359835.1:p.Pro157Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.470C>T
  hgvsp: ENSP00000377831.1:p.Pro157Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.467C>T
  hgvsp: ENSP00000329097.3:p.Pro156Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.470C>T
  hgvsp: ENSP00000359836.4:p.Pro157Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.365C>T
  hgvsp: ENSP00000394480.2:p.Pro122Leu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.467C>T
  hgvsp: ENSP00000359839.3:p.Pro156Leu
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
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genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
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genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro156Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

X-133547589-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547589
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547589
    reference: chr 0
allele count: 7
allele frequency: 8.01181169953417e-5
allele num: 87371
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.490C>T
  hgvsp: ENSP00000359835.1:p.Arg164Cys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.490C>T
  hgvsp: ENSP00000359836.4:p.Arg164Cys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.487C>T
  hgvsp: ENSP00000329097.3:p.Arg163Cys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.490C>T
  hgvsp: ENSP00000377831.1:p.Arg164Cys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.385C>T
  hgvsp: ENSP00000394480.2:p.Arg129Cys
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.487C>T
  hgvsp: ENSP00000359839.3:p.Arg163Cys
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29601
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 3657
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg163Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

X-133547611-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547611
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547611
    reference: chr 0
allele count: 1
allele frequency: 1.142413233714899e-5
allele num: 87534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.509C>G
  hgvsp: ENSP00000359839.3:p.Thr170Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.512C>G
  hgvsp: ENSP00000359835.1:p.Thr171Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.512C>G
  hgvsp: ENSP00000359836.4:p.Thr171Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.512C>G
  hgvsp: ENSP00000377831.1:p.Thr171Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.407C>G
  hgvsp: ENSP00000394480.2:p.Thr136Ser
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.509C>G
  hgvsp: ENSP00000329097.3:p.Thr170Ser
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4684
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr170Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

X-133547619-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547619
    reference: chr 0
allele count: 1
allele frequency: 1.142113137727423e-5
allele num: 87557
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.520A>G
  hgvsp: ENSP00000359835.1:p.Lys174Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.517A>G
  hgvsp: ENSP00000329097.3:p.Lys173Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.520A>G
  hgvsp: ENSP00000359836.4:p.Lys174Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.520A>G
  hgvsp: ENSP00000377831.1:p.Lys174Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.415A>G
  hgvsp: ENSP00000394480.2:p.Lys139Glu
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.517A>G
  hgvsp: ENSP00000359839.3:p.Lys173Glu
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29618
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys173Glu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

X-133547630-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547630
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547630
    reference: chr 0
allele count: 2
allele frequency: 2.283496032425644e-5
allele num: 87585
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.531A>G
  hgvsp: ENST00000370799.1:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.528A>G
  hgvsp: ENST00000332070.3:c.528A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.531A>G
  hgvsp: ENST00000370800.4:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.528A>G
  hgvsp: ENST00000370803.3:c.528A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.426A>G
  hgvsp: ENST00000416404.2:c.426A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.531A>G
  hgvsp: ENST00000394292.1:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 10
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genotype quality: GenotypeQuality
  all individuals: 3277
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genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser176Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-133547639-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547639
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547639
    reference: chr 0
allele count: 1
allele frequency: 1.141708909896333e-5
allele num: 87588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.537C>A
  hgvsp: ENST00000370803.3:c.537C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.540C>A
  hgvsp: ENST00000370799.1:c.540C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.540C>A
  hgvsp: ENST00000370800.4:c.540C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.540C>A
  hgvsp: ENST00000394292.1:c.540C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.435C>A
  hgvsp: ENST00000416404.2:c.435C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.537C>A
  hgvsp: ENST00000332070.3:c.537C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9775
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 11757
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29622
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1747
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genotype quality: GenotypeQuality
  all individuals: 8
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 12207
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genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr179Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

X-133547639-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547639
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547639
    reference: chr 0
allele count: 2
allele frequency: 2.283417819792666e-5
allele num: 87588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.537C>G
  hgvsp: ENST00000370803.3:c.537C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.540C>G
  hgvsp: ENST00000394292.1:c.540C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.540C>G
  hgvsp: ENST00000370800.4:c.540C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.540C>G
  hgvsp: ENST00000370799.1:c.540C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.537C>G
  hgvsp: ENST00000332070.3:c.537C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.435C>G
  hgvsp: ENST00000416404.2:c.435C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29622
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr179Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

X-133547649-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547649
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547649
    reference: chr 0
allele count: 1
allele frequency: 1.141865351237782e-5
allele num: 87576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.550T>G
  hgvsp: ENSP00000359836.4:p.Ser184Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.547T>G
  hgvsp: ENSP00000329097.3:p.Ser183Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.547T>G
  hgvsp: ENSP00000359839.3:p.Ser183Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.550T>G
  hgvsp: ENSP00000359835.1:p.Ser184Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.550T>G
  hgvsp: ENSP00000377831.1:p.Ser184Ala
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.445T>G
  hgvsp: ENSP00000394480.2:p.Ser149Ala
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
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genotype depth: GenotypeDepth
  all individuals: 8
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5827
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genotype depth: GenotypeDepth
  all individuals: 566
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29623
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser183Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

X-133547650-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547650
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547650
    reference: chr 0
allele count: 1
allele frequency: 1.141865351237782e-5
allele num: 87576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.551C>T
  hgvsp: ENSP00000377831.1:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.548C>T
  hgvsp: ENSP00000329097.3:p.Ser183Phe
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.446C>T
  hgvsp: ENSP00000394480.2:p.Ser149Phe
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.551C>T
  hgvsp: ENSP00000359835.1:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.551C>T
  hgvsp: ENSP00000359836.4:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.548C>T
  hgvsp: ENSP00000359839.3:p.Ser183Phe
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1975
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
  all individuals: 4688
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  variant carriers: 0
hgvs: p.Ser183Phe
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-133547693-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547693
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547694
    reference: chr 0
allele count: 1
allele frequency: 1.145422890131036e-5
allele num: 87304
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.588+14dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.588+14dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.483+14dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.588+14dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.585+14dupA
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.585+14dupA
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11661
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  variant carriers: 0
hgvs: c.585+14dupA
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-133547716-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547716
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547716
    reference: chr 0
allele count: 1
allele frequency: 1.1469336728257e-5
allele num: 87189
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.588+29C>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.483+29C>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.588+29C>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.588+29C>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.585+29C>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.585+29C>A
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 142
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genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-133547716-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547716
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547716
    reference: chr 0
allele count: 1
allele frequency: 1.1469336728257e-5
allele num: 87189
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.483+29C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.585+29C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.588+29C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.588+29C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.585+29C>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.588+29C>G
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 568
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 132
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genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-133547814-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547814
    reference: chr 0
allele count: 164
allele frequency: 1.88310942702951e-3
allele num: 87090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.589-39T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.586-39T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.484-39T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.589-39T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.589-39T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.586-39T>C
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2515
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 5
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6035
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

X-133547816-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547816
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547817
    reference: chr 0
allele count: 1
allele frequency: 1.15073474413413e-5
allele num: 86901
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.589-29dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.586-29dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.589-29dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.589-29dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.484-29dupT
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.586-29dupT
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1903
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-133547831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547831
    reference: chr 0
allele count: 1
allele frequency: 1.147486430972954e-5
allele num: 87147
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.484-22G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.586-22G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.589-22G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.589-22G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.589-22G>A
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.586-22G>A
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 308
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 34072
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-133547831-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547831
    reference: chr 0
allele count: 1
allele frequency: 1.147486430972954e-5
allele num: 87147
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.589-22G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.589-22G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.484-22G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.589-22G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.586-22G>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.586-22G>T
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 352
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 1903
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genotype depth: GenotypeDepth
  all individuals: 1200
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 34072
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2264
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genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

X-133547835-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547835
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547835
    reference: chr 0
allele count: 3
allele frequency: 3.440090818397606e-5
allele num: 87207
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.589-18T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.586-18T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.586-18T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.484-18T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.589-18T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.589-18T>C
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1904
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3040
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

X-133547838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547838
    reference: chr 0
allele count: 6
allele frequency: 6.883417846408003e-5
allele num: 87166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.586-15C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.589-15C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.586-15C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.589-15C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.589-15C>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.484-15C>T
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2516
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 131
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  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-133547859-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547859
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547859
    reference: chr 0
allele count: 1
allele frequency: 1.142256642222375e-5
allele num: 87546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.595A>C
  hgvsp: ENST00000370800.4:c.595A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.592A>C
  hgvsp: ENST00000332070.3:c.592A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.595A>C
  hgvsp: ENST00000370799.1:c.595A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.490A>C
  hgvsp: ENST00000416404.2:c.490A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.595A>C
  hgvsp: ENST00000394292.1:c.595A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.592A>C
  hgvsp: ENST00000370803.3:c.592A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5652
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg198Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

X-133547899-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547899
    reference: chr 0
allele count: 1
allele frequency: 1.140172850204091e-5
allele num: 87706
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.632A>G
  hgvsp: ENSP00000329097.3:p.Lys211Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.635A>G
  hgvsp: ENSP00000359835.1:p.Lys212Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.530A>G
  hgvsp: ENSP00000394480.2:p.Lys177Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.632A>G
  hgvsp: ENSP00000359839.3:p.Lys211Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.635A>G
  hgvsp: ENSP00000359836.4:p.Lys212Arg
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.635A>G
  hgvsp: ENSP00000377831.1:p.Lys212Arg
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34119
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys211Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS

X-133547915-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547915
    reference: chr 0
allele count: 7
allele frequency: 7.980573005141769e-5
allele num: 87713
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.651T>C
  hgvsp: ENST00000370799.1:c.651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.546T>C
  hgvsp: ENST00000416404.2:c.546T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.648T>C
  hgvsp: ENST00000370803.3:c.648T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.648T>C
  hgvsp: ENST00000332070.3:c.648T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.651T>C
  hgvsp: ENST00000370800.4:c.651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.651T>C
  hgvsp: ENST00000394292.1:c.651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His216His
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

X-133547963-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547963
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547963
    reference: chr 0
allele count: 1
allele frequency: 1.139990880072959e-5
allele num: 87720
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.696T>C
  hgvsp: ENST00000332070.3:c.696T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.699T>C
  hgvsp: ENST00000370800.4:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.696T>C
  hgvsp: ENST00000370803.3:c.696T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.594T>C
  hgvsp: ENST00000416404.2:c.594T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.699T>C
  hgvsp: ENST00000370799.1:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.699T>C
  hgvsp: ENST00000394292.1:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn232Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

X-133547981-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547981
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547981
    reference: chr 0
allele count: 10
allele frequency: 1.140068860159154e-4
allele num: 87714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.717C>T
  hgvsp: ENST00000394292.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.717C>T
  hgvsp: ENST00000370799.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.717C>T
  hgvsp: ENST00000370800.4:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.714C>T
  hgvsp: ENST00000332070.3:c.714C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.612C>T
  hgvsp: ENST00000416404.2:c.612C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.714C>T
  hgvsp: ENST00000370803.3:c.714C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala238Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-133547998-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133547998
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133547998
    reference: chr 0
allele count: 1
allele frequency: 1.140510948905109e-5
allele num: 87680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.732+2T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.627+2T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.729+2T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.732+2T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.729+2T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.732+2T>G
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.729+2T>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

X-133548000-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133548000
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133548000
    reference: chr 0
allele count: 204
allele frequency: 2.32669540819818e-3
allele num: 87678
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.732+4A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.732+4A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.732+4A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.729+4A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.729+4A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.627+4A>G
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 9.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6496
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34181
  bin: 9.75e1
  variant carriers: 198
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 8.25e1
  variant carriers: 2
hgvs: c.729+4A>G
num of homozygotes: 3
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-133548043-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133548043
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133548043
    reference: chr 0
allele count: 8
allele frequency: 9.153108624516601e-5
allele num: 87402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.732+47T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.627+47T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.729+47T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.732+47T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.729+47T>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.732+47T>G
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34123
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

X-133548995-TTCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133548995
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133548991
    reference: chr 0
allele count: 1498
allele frequency: 2.458680059743628e-2
allele num: 60927
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.730-48_730-45delTCTC
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.733-48_733-45delTCTC
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.628-48_628-45delTCTC
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.733-48_733-45delTCTC
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.733-48_733-45delTCTC
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.730-48_730-45delTCTC
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 2.5e0
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 1.75e1
  variant carriers: 334
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 1.25e1
  variant carriers: 423
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 2.25e1
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 16984
  bin: 7.5e0
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 2.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4974
  bin: 6.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 6181
  bin: 3.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 9.75e1
  variant carriers: 1142
genotype quality: GenotypeQuality
  all individuals: 9683
  bin: 2.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 1.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 7.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 3560
  bin: 4.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 6.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 1.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 5.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 2.5e0
  variant carriers: 7
num of homozygotes: 91
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: TTCTC
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-133548998-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133548998
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133548998
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 58334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.733-48T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.730-48T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.628-48T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.733-48T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.733-48T>C
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.730-48T>C
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16670
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4461
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6081
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

X-133549002-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133549002
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133549002
    reference: chr 0
allele count: 2
allele frequency: 3.272144236117928e-5
allele num: 61122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.730-44A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.628-44A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.733-44A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.733-44A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.733-44A>G
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.730-44A>G
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14472
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12985
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4979
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-133549008-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133549008
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24133549008
    reference: chr 0
allele count: 1
allele frequency: 1.620535424904389e-5
allele num: 61708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000377831
  ensembl transcript: ENST00000394292
  gene symbol: PHF6
  hgvsc: ENST00000394292.1:c.733-38A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000394480
  ensembl transcript: ENST00000416404
  gene symbol: PHF6
  hgvsc: ENST00000416404.2:c.628-38A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359836
  ensembl transcript: ENST00000370800
  gene symbol: PHF6
  hgvsc: ENST00000370800.4:c.733-38A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359839
  ensembl transcript: ENST00000370803
  gene symbol: PHF6
  hgvsc: ENST00000370803.3:c.730-38A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000329097
  ensembl transcript: ENST00000332070
  gene symbol: PHF6
  hgvsc: ENST00000332070.3:c.730-38A>T
  variant of: http://identifiers.org/hgnc/18145
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156531
  ensembl protein: ENSP00000359835
  ensembl transcript: ENST00000370799
  gene symbol: PHF6
  hgvsc: ENST00000370799.1:c.733-38A>T
  variant of: http://identifiers.org/hgnc/18145
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6008
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3264
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15123
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

X-133549017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24133549017
allele count: 2
allele frequency: 3.170074496750673e-5
allele num: 63090
alternate allele: A
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 3665
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9486
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.145232221387965e-4
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47977
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.624e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 4.62e-1

DP
type: SiteQuality
SIO_000300: 1.927453e6

GenotypeQuality
all individuals: 540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.458e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

DP
type: SiteQuality
SIO_000300: 1.927477e6

QD
type: SiteQuality
SIO_000300: 2.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.601e0

FS
type: SiteQuality
SIO_000300: 8.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 539
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2029
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47973
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.290464442775931e-4
allele num: 9323
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.903e-1

FS
type: SiteQuality
SIO_000300: 1.822e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.36e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.927284e6

QD
type: SiteQuality
SIO_000300: 1.561e1

GenotypeQuality
all individuals: 2026
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1084
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08467968896579e-5
allele num: 47969
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.636e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.733e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.662e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.926261e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.323e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9437
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10103
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085462242706096e-5
allele num: 47951
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.15e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.35e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

VQSLOD
type: SiteQuality
SIO_000300: -2.477e0

DP
type: SiteQuality
SIO_000300: 1.923975e6

FS
type: SiteQuality
SIO_000300: 2.421e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9295
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 33117
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variant carriers: 0

GenotypeQuality
all individuals: 480
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 251
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variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4377
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9041
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.190244650327442e-5
allele num: 45657
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8395
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.744407e6

QD
type: SiteQuality
SIO_000300: 4.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.148e0

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 111
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 394
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variant carriers: 0

GenotypeQuality
all individuals: 1483
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GenotypeQuality
all individuals: 1555
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9021
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.201334008409096e-5
allele num: 45427
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4359
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.502e0

QD
type: SiteQuality
SIO_000300: 3.468e1

MQ
type: SiteQuality
SIO_000300: 5.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.725843e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1508
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1334
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variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9547
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8283
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.257489220488972e-5
allele num: 44297
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 4.375e0

DP
type: SiteQuality
SIO_000300: 1.618899e6

QD
type: SiteQuality
SIO_000300: 1.656e1

MQRankSum
type: SiteQuality
SIO_000300: -1.018e0

VQSLOD
type: SiteQuality
SIO_000300: -1.929e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.998e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1314
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.049097775912715e-4
allele num: 9532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.260653328812027e-5
allele num: 44235
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8843
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6263
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 1.616294e6

QD
type: SiteQuality
SIO_000300: 2.493e1

GenotypeQuality
all individuals: 1177
bin: 7.75e1
variant carriers: 8

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 485

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1021
bin: 3.75e1
variant carriers: 24

GenotypeQuality
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variant carriers: 13

GenotypeQuality
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bin: 7.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4057
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.38004569687738e-5
allele num: 42016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5971
num of homozygotes: 0

Latino
type: Population
allele count: 645
allele frequency: 7.607926397735315e-2
allele num: 8478
num of homozygotes: 26

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.478260869565218e-3
allele num: 575
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.493765586034913e-4
allele num: 8020
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.630000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.023e1

DP
type: SiteQuality
SIO_000300: 1.461295e6

GenotypeQuality
all individuals: 1098
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
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variant carriers: 0

GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 617
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GenotypeQuality
all individuals: 444
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GenotypeQuality
all individuals: 727
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GenotypeQuality
all individuals: 1652
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7721
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8245
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40194
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.048584411045089e-3
allele num: 5722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8985
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

QD
type: SiteQuality
SIO_000300: 9.65e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.308e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 1.358741e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

GenotypeQuality
all individuals: 1116
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21025
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7863
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.656324709132444e-5
allele num: 37646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 527
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3721
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.74e1

FS
type: SiteQuality
SIO_000300: 2.219e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.265784e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

GenotypeQuality
all individuals: 443
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7863
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.968974127397333e-5
allele num: 37646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 527
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3721
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5321
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

DP
type: SiteQuality
SIO_000300: 1.265784e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

FS
type: SiteQuality
SIO_000300: 2.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

QD
type: SiteQuality
SIO_000300: 1.74e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 612
bin: 5.25e1
variant carriers: 143

GenotypeQuality
all individuals: 2727
bin: 2.75e1
variant carriers: 176

GenotypeQuality
all individuals: 1975
bin: 9.75e1
variant carriers: 207

GenotypeQuality
all individuals: 1344
bin: 3.75e1
variant carriers: 187

GenotypeQuality
all individuals: 441
bin: 7.25e1
variant carriers: 79

GenotypeQuality
all individuals: 1132
bin: 6.75e1
variant carriers: 79

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 29

Latino
type: Population
allele count: 104
allele frequency: 2.177098597446096e-2
allele num: 4777
num of homozygotes: 0

South Asian
type: Population
allele count: 216
allele frequency: 3.950978598865923e-2
allele num: 5467
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 9.671179883945841e-4
allele num: 3102
num of homozygotes: 0

African
type: Population
allele count: 88
allele frequency: 1.536044684936289e-2
allele num: 5729
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 1.522842639593909e-2
allele num: 394
num of homozygotes: 0

East Asian
type: Population
allele count: 35
allele frequency: 9.350788137857334e-3
allele num: 3743
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 297
allele frequency: 1.143627262225645e-2
allele num: 25970
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 8.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 1.210864e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.28e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 664
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 5.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3743
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.745505323791238e-4
allele num: 5729
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4777
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5467
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.210864e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.28e-2

QD
type: SiteQuality
SIO_000300: 8.9e-1

GenotypeQuality
all individuals: 2413
bin: 3.25e1
variant carriers: 23

GenotypeQuality
all individuals: 692
bin: 4.25e1
variant carriers: 25

GenotypeQuality
all individuals: 612
bin: 5.25e1
variant carriers: 18

GenotypeQuality
all individuals: 1975
bin: 9.75e1
variant carriers: 104

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1132
bin: 6.75e1
variant carriers: 16

African
type: Population
allele count: 15
allele frequency: 2.618257985686856e-3
allele num: 5729
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 125
allele frequency: 4.813246053138236e-3
allele num: 25970
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.538071065989848e-3
allele num: 394
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 5.48747027620267e-4
allele num: 5467
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.602992252204114e-3
allele num: 3743
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.884027632405275e-3
allele num: 4777
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.223726627981947e-4
allele num: 3102
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.28e-2

DP
type: SiteQuality
SIO_000300: 1.210864e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

GenotypeQuality
all individuals: 3132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3217
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6829
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31039
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6651
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.273560876209883e-4
allele num: 7852
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

FS
type: SiteQuality
SIO_000300: 1.505e0

VQSLOD
type: SiteQuality
SIO_000300: -2.214e0

MQ
type: SiteQuality
SIO_000300: 5.824e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

DP
type: SiteQuality
SIO_000300: 1.047432e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.286e0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6239
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3781
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27675
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 9.76616e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: -2.708e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 3.404e1

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.22e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6059
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.660026560424967e-4
allele num: 6024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26337
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.49077e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.265e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

GenotypeQuality
all individuals: 2963
bin: 1.75e1
variant carriers: 123

GenotypeQuality
all individuals: 3949
bin: 1.25e1
variant carriers: 142

GenotypeQuality
all individuals: 801
bin: 4.25e1
variant carriers: 47

GenotypeQuality
all individuals: 315
bin: 5.25e1
variant carriers: 41

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2429
bin: 3.75e1
variant carriers: 60

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 3.476567932137394e-3
allele num: 7191
num of homozygotes: 0

Latino
type: Population
allele count: 42
allele frequency: 7.180714652077278e-3
allele num: 5849
num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 5.203088284659282e-3
allele num: 5958
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 175
allele frequency: 6.194690265486726e-2
allele num: 2825
num of homozygotes: 6

Other
type: Population
allele count: 10
allele frequency: 2.358490566037736e-2
allele num: 424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1113
allele frequency: 4.26338772695932e-2
allele num: 26106
num of homozygotes: 16

DP
type: SiteQuality
SIO_000300: 9.28966e5

MQ
type: SiteQuality
SIO_000300: 5.563e1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

QD
type: SiteQuality
SIO_000300: 1.723e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.52e-1

GenotypeQuality
all individuals: 3110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12459
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5727
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2457
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3209
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.301075268817204e-5
allele num: 23250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5505
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.78333e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

QD
type: SiteQuality
SIO_000300: 4.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 5.752e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.044e0

VQSLOD
type: SiteQuality
SIO_000300: -1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 965
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5705
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 397
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6995
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22912
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.73976e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

QD
type: SiteQuality
SIO_000300: 2.538e1

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13932
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5107
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8401
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.214348981399469e-4
allele num: 4516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10067
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 3.101e1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 2.068369e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.083e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.73e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5153
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096216329525207e-5
allele num: 47705
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.138e0

FS
type: SiteQuality
SIO_000300: 2.763e0

VQSLOD
type: SiteQuality
SIO_000300: -1.666e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.76e-1

QD
type: SiteQuality
SIO_000300: 1.622e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.070971e6

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
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variant carriers: 0

GenotypeQuality
all individuals: 13941
bin: 9.75e1
variant carriers: 15

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8419
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.685170499603489e-3
allele num: 10088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.592e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.308e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.071898e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.986e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13934
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10093
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094898921127055e-5
allele num: 47735
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 2.072291e6

VQSLOD
type: SiteQuality
SIO_000300: 9.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.39e-2

QD
type: SiteQuality
SIO_000300: 2.805e1

GenotypeQuality
all individuals: 2343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 13933
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094591764065184e-5
allele num: 47742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

DP
type: SiteQuality
SIO_000300: 2.072825e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.48e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.203e0

QD
type: SiteQuality
SIO_000300: 2.626e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13935
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5137
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47759
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8421
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.980982567353407e-4
allele num: 10096
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 2.86e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.712e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.253e0

VQSLOD
type: SiteQuality
SIO_000300: -5.224e-1

FS
type: SiteQuality
SIO_000300: 2.418e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

DP
type: SiteQuality
SIO_000300: 2.073289e6

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13940
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.093539337604153e-5
allele num: 47766
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.510574018126888e-3
allele num: 6620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.589825119236884e-3
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.980786372189759e-4
allele num: 10097
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.571e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.059e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 2.074091e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13934
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variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10097
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e-1

QD
type: SiteQuality
SIO_000300: 2.462e1

DP
type: SiteQuality
SIO_000300: 2.073607e6

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.354e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.910802775024777e-5
allele num: 10090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.75e-2

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.069847e6

GenotypeQuality
all individuals: 2195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 313
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GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 27942
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47709
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8413
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.915716410510659e-5
allele num: 10085
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.195e1

DP
type: SiteQuality
SIO_000300: 2.066114e6

VQSLOD
type: SiteQuality
SIO_000300: 6.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.19e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 27648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096480010063104e-5
allele num: 47699
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.188071759534276e-4
allele num: 8417
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.147e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 2.063348e6

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

FS
type: SiteQuality
SIO_000300: 2.0494e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

GenotypeQuality
all individuals: 3096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13934
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2731
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8337
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10021
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6579
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.225114078080108e-5
allele num: 47336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.726e1

VQSLOD
type: SiteQuality
SIO_000300: -7.314000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.006581e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.118e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.09e-1

GenotypeQuality
all individuals: 602
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2870
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.994003597841295e-5
allele num: 10006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47249
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7895
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
SIO_000300: 2.704e1

VQSLOD
type: SiteQuality
SIO_000300: -5.078e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 2.470752e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1585
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2872
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29470
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7897
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.11546191110829e-5
allele num: 47271
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10027
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6589
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.672e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.475332e6

QD
type: SiteQuality
SIO_000300: 2.908e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.734e0

MQ
type: SiteQuality
SIO_000300: 6.051e1

GenotypeQuality
all individuals: 3206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29479
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1587
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2914
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4024
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.553734061930783e-4
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7895
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10037
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
type: SiteQuality
SIO_000300: 2.484636e6

QD
type: SiteQuality
SIO_000300: 1.734e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

FS
type: SiteQuality
SIO_000300: 9.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.54e-1

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1633
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6589
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.228240417750153e-5
allele num: 47301
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 2.50657e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.08e1

GenotypeQuality
all individuals: 4397
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.984914648670107e-4
allele num: 10076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7953
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.927e0

FS
type: SiteQuality
SIO_000300: 3.265e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.485e0

DP
type: SiteQuality
SIO_000300: 2.526731e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

QD
type: SiteQuality
SIO_000300: 2.779e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29542
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7965
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47374
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.921619208254787e-5
allele num: 10079
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.961e0

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.288e0

QD
type: SiteQuality
SIO_000300: 1.177e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.528183e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29542
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11739
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3496
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.110862498416853e-5
allele num: 47374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7965
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10079
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.21141088014153e-4
allele num: 4522
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 5.961e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.288e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

DP
type: SiteQuality
SIO_000300: 2.528183e6

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29572
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2672
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8163
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.104288540044611e-5
allele num: 47522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.543439e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 8.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.088e0

QD
type: SiteQuality
SIO_000300: 1.282e1

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.745e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29583
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2684
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47622
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.509206157561123e-4
allele num: 6626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8357
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.198e0

VQSLOD
type: SiteQuality
SIO_000300: 8.33e-1

FS
type: SiteQuality
SIO_000300: 5.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

DP
type: SiteQuality
SIO_000300: 2.550434e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

QD
type: SiteQuality
SIO_000300: 1.379e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.889240506329114e-5
allele num: 10112
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8379
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 2.552905e6

QD
type: SiteQuality
SIO_000300: 1.55e1

VQSLOD
type: SiteQuality
SIO_000300: -1.054e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.692e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.465999287943203e-4
allele num: 47749
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8407
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.634e0

QD
type: SiteQuality
SIO_000300: 1.705e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.43e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.106e-1

DP
type: SiteQuality
SIO_000300: 2.557021e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.726e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088860109038498e-5
allele num: 47873
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.56094e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.982e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8419
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47899
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.882399446585631e-5
allele num: 10119
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.75e-2

QD
type: SiteQuality
SIO_000300: 3.374e1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.561374e6

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3680
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.188071759534276e-4
allele num: 8417
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086463027875146e-5
allele num: 47928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.006e0

QD
type: SiteQuality
SIO_000300: 5.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.974e0

FS
type: SiteQuality
SIO_000300: 7.871e0

MQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 2.561737e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2709
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8409
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086027785890108e-5
allele num: 47938
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.379e1

DP
type: SiteQuality
SIO_000300: 2.561896e6

FS
type: SiteQuality
SIO_000300: 1.792e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 9.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8409
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.172055571780216e-5
allele num: 47938
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.792e0

ClippingRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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MQ
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.085810232985003e-5
allele num: 47943
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8389
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.085810232985003e-5
allele num: 47943
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 633
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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DP
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FS
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47893
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.894132779261898e-5
allele num: 10107
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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MQRankSum
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SIO_000300: -2.05e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

DP
type: SiteQuality
SIO_000300: 2.558506e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.28e-1

GenotypeQuality
all individuals: 4631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088641964994361e-5
allele num: 47878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.552894e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.531e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

FS
type: SiteQuality
SIO_000300: 1.3814e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

QD
type: SiteQuality
SIO_000300: 2.436e1

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29628
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11351
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088641964994361e-5
allele num: 47878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 2.436e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 1.3814e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

VQSLOD
type: SiteQuality
SIO_000300: -1.531e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

DP
type: SiteQuality
SIO_000300: 2.552894e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

GenotypeQuality
all individuals: 64
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1787
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 34080
bin: 9.75e1
variant carriers: 139

GenotypeQuality
all individuals: 2200
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2946
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3675
bin: 6.75e1
variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 131
allele frequency: 2.749328408327737e-3
allele num: 47648
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 2.901353965183753e-3
allele num: 9306
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.410509822827528e-4
allele num: 8297
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.587301587301587e-3
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.63129973474801e-4
allele num: 4524
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.856e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.056e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 3.225004e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33998
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6559
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.895111814763506e-5
allele num: 10106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8271
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 3.225146e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

FS
type: SiteQuality
SIO_000300: 7.013e0

MQRankSum
type: SiteQuality
SIO_000300: -5.82e-1

QD
type: SiteQuality
SIO_000300: 1.246e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47643
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.196888090963495e-4
allele num: 8355
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.731e0

QD
type: SiteQuality
SIO_000300: 1.79e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 7.513e0

MQRankSum
type: SiteQuality
SIO_000300: -1.492e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

DP
type: SiteQuality
SIO_000300: 3.232499e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.098944231051781e-5
allele num: 47643
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8355
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.492e0

VQSLOD
type: SiteQuality
SIO_000300: -1.731e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

DP
type: SiteQuality
SIO_000300: 3.232499e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

FS
type: SiteQuality
SIO_000300: 7.513e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

QD
type: SiteQuality
SIO_000300: 1.79e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7395
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8367
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.097447406506282e-5
allele num: 47677
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.976284584980237e-4
allele num: 10120
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 9.287000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.76e-2

QD
type: SiteQuality
SIO_000300: 2.794e1

DP
type: SiteQuality
SIO_000300: 3.235222e6

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.917e0

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3046
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34072
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.973715651135006e-4
allele num: 8370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.099076406381192e-5
allele num: 47640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.757e1

FS
type: SiteQuality
SIO_000300: 6.8364e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e0

MQ
type: SiteQuality
SIO_000300: 5.744e1

DP
type: SiteQuality
SIO_000300: 3.237703e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.089e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e0

GenotypeQuality
all individuals: 34099
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090475792290325e-5
allele num: 47836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

DP
type: SiteQuality
SIO_000300: 3.252286e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.547e0

VQSLOD
type: SiteQuality
SIO_000300: -8.682e-1

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.208480565371025e-4
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47961
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 3.258699e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

QD
type: SiteQuality
SIO_000300: 3.299e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4144
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34121
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2448
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508068164681044e-4
allele num: 6631
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.338892595063375e-5
allele num: 47968
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.145922746781116e-4
allele num: 9320
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.260046e6

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1861
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4171
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174950064622254e-4
allele num: 8511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.302e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.145e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.260295e6

MQ
type: SiteQuality
SIO_000300: 5.912e1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34130
bin: 9.75e1
variant carriers: 10

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 9.877518767285659e-4
allele num: 10124
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

QD
type: SiteQuality
SIO_000300: 2.046e1

FS
type: SiteQuality
SIO_000300: 5.47e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.228e-1

DP
type: SiteQuality
SIO_000300: 3.260639e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.186e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.32e0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2448
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086332436210386e-5
allele num: 47931
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

FS
type: SiteQuality
SIO_000300: 1.0006e1

DP
type: SiteQuality
SIO_000300: 3.25951e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.056e0

QD
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.172838991007532e-5
allele num: 47929
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.217848332081948e-4
allele num: 9323
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.582278481012658e-3
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

African
type: Population
allele count: 198
allele frequency: 2.328042328042328e-2
allele num: 8505
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

FS
type: SiteQuality
SIO_000300: 1.212e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 3.278023e6

VQSLOD
type: SiteQuality
SIO_000300: 1.746e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.668e1

GenotypeQuality
all individuals: 2808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 8.304662474789417e-4
allele num: 8429
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.49e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.147e1

MQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.09e-1

DP
type: SiteQuality
SIO_000300: 3.246291e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 1058
bin: 5.75e1
variant carriers: 16

GenotypeQuality
all individuals: 595
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2188
bin: 4.25e1
variant carriers: 50

GenotypeQuality
all individuals: 4194
bin: 2.75e1
variant carriers: 75

GenotypeQuality
all individuals: 5006
bin: 3.75e1
variant carriers: 73

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 13

Latino
type: Population
allele count: 401
allele frequency: 5.932830300340287e-2
allele num: 6759
num of homozygotes: 9

Other
type: Population
allele count: 4
allele frequency: 8.583690987124463e-3
allele num: 466
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 4.734350341925302e-3
allele num: 7604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.886002886002886e-4
allele num: 3465
num of homozygotes: 0

East Asian
type: Population
allele count: 1026
allele frequency: 2.053642914331465e-1
allele num: 4996
num of homozygotes: 82

African
type: Population
allele count: 4
allele frequency: 6.229559258682448e-4
allele num: 6421
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 8.329062019477191e-4
allele num: 31216
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.013e-1

QD
type: SiteQuality
SIO_000300: 1.882e1

MQ
type: SiteQuality
SIO_000300: 5.388e1

MQRankSum
type: SiteQuality
SIO_000300: -9.21e-1

DP
type: SiteQuality
SIO_000300: 9.29745e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

GenotypeQuality
all individuals: 10863
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4910
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 457
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6397
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7545
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.97972e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.137e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 355
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2918
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5035
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6847
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.396111164412037e-5
allele num: 31269
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7611
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6425
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3467
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
type: SiteQuality
SIO_000300: 9.47598e5

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.927e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 1.151e1

GenotypeQuality
all individuals: 4330
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7673
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5117
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6925
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6461
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.168467412312664e-5
allele num: 31561
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 471
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.355e0

DP
type: SiteQuality
SIO_000300: 9.82467e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

QD
type: SiteQuality
SIO_000300: 1.282e1

VQSLOD
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1