21-37425960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37425960
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37425960
    reference: chr 21
allele count: 33
allele frequency: 2.724255782852048e-4
allele num: 121134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.170-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.194-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.170-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.170-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.98-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.92-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.98-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.245-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.170-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.170-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.170-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.170-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.98-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.98-42G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.98-42G>A
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10265
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

21-37425961-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37425961
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37425961
    reference: chr 21
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.170-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.170-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.98-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.170-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.170-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.98-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.92-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.170-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.98-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.170-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.170-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.245-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.194-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.98-43A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.98-43A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

21-37425967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37425967
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37425967
    reference: chr 21
allele count: 11
allele frequency: 9.088355338169439e-5
allele num: 121034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.98-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.170-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.92-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.98-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.170-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.170-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.194-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.170-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.98-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.170-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.98-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.98-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.245-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.170-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.170-49C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9343
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

21-37429358-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429358
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429358
    reference: chr 21
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+49G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+49G>A
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/21-37429367-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429367
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429367
    reference: chr 21
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+40G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+40G>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

21-37429367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429367
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429367
    reference: chr 21
allele count: 3
allele frequency: 2.476309967973058e-5
allele num: 121148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+40G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+40G>A
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

21-37429368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429368
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429368
    reference: chr 21
allele count: 2
allele frequency: 1.650328415354656e-5
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+39C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+39C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9330
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

21-37429369-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429369
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429369
    reference: chr 21
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+38A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+38A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

21-37429370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429370
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429370
    reference: chr 21
allele count: 3
allele frequency: 2.475288371095233e-5
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+37C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+37C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

21-37429384-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429384
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429384
    reference: chr 21
allele count: 2
allele frequency: 1.649430121892886e-5
allele num: 121254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+23C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+23C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

21-37429389-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429389
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429389
    reference: chr 21
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+18G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+18G>C
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

21-37429390-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429390
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429390
    reference: chr 21
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+17A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+17A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

21-37429393-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429393
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429393
    reference: chr 21
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+14T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+14T>A
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

21-37429394-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429394
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429394
    reference: chr 21
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+13C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

21-37429397-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429397
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429397
    reference: chr 21
allele count: 12
allele frequency: 9.893806477145307e-5
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+10A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+10A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/21-37429402-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429402
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429402
    reference: chr 21
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+5G>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+5G>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.169+5G>T
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/21-37429405-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429405
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429405
    reference: chr 21
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.91+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.169+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.97+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.169+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.169+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.193+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.169+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.97+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.244+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.169+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.169+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.97+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.97+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.97+2T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.169+2T>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.169+2T>G
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

21-37429418-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429418
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429418
    reference: chr 21
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.86C>T
  hgvsp: ENSP00000382152.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.86C>T
  hgvsp: ENSP00000394822.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.86C>T
  hgvsp: ENSP00000413318.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.158C>T
  hgvsp: ENSP00000392463.1:p.Ala53Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.158C>T
  hgvsp: ENSP00000329189.4:p.Ala53Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.158C>T
  hgvsp: ENSP00000382158.1:p.Ala53Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.158C>T
  hgvsp: ENSP00000382159.2:p.Ala53Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.80C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.182C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.86C>T
  hgvsp: ENSP00000382156.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.86C>T
  hgvsp: ENSP00000382161.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.158C>T
  hgvsp: ENSP00000396837.1:p.Ala53Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.158C>T
  hgvsp: ENSP00000399998.1:p.Ala53Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.158C>T
  hgvsp: ENSP00000382163.1:p.Ala53Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.233C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala53Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/21-37429420-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429420
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429420
    reference: chr 21
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.156T>G
  hgvsp: ENST00000399208.2:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.156T>G
  hgvsp: ENST00000443703.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.180T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.84T>G
  hgvsp: ENST00000399212.1:c.84T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.78T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.156T>G
  hgvsp: ENST00000424303.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.156T>G
  hgvsp: ENST00000399207.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.84T>G
  hgvsp: ENST00000442559.1:c.84T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.156T>G
  hgvsp: ENST00000399215.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.84T>G
  hgvsp: ENST00000399201.1:c.84T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.156T>G
  hgvsp: ENST00000429161.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.156T>G
  hgvsp: ENST00000332131.4:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.84T>G
  hgvsp: ENST00000399205.1:c.84T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.84T>G
  hgvsp: ENST00000446166.1:c.84T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.231T>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro52Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

21-37429421-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429421
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429421
    reference: chr 21
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.83C>G
  hgvsp: ENSP00000382161.1:p.Pro28Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.230C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.155C>G
  hgvsp: ENSP00000382159.2:p.Pro52Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.155C>G
  hgvsp: ENSP00000382158.1:p.Pro52Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.155C>G
  hgvsp: ENSP00000396837.1:p.Pro52Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.77C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.83C>G
  hgvsp: ENSP00000382156.1:p.Pro28Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.155C>G
  hgvsp: ENSP00000329189.4:p.Pro52Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.179C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.83C>G
  hgvsp: ENSP00000413318.1:p.Pro28Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.155C>G
  hgvsp: ENSP00000392463.1:p.Pro52Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.155C>G
  hgvsp: ENSP00000399998.1:p.Pro52Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.83C>G
  hgvsp: ENSP00000382152.1:p.Pro28Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.155C>G
  hgvsp: ENSP00000382163.1:p.Pro52Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.83C>G
  hgvsp: ENSP00000394822.1:p.Pro28Arg
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro52Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

21-37429423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429423
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429423
    reference: chr 21
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.75G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.153G>A
  hgvsp: ENST00000399207.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.153G>A
  hgvsp: ENST00000424303.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.81G>A
  hgvsp: ENST00000442559.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.177G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.81G>A
  hgvsp: ENST00000399201.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.81G>A
  hgvsp: ENST00000399212.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.153G>A
  hgvsp: ENST00000399208.2:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.153G>A
  hgvsp: ENST00000429161.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.81G>A
  hgvsp: ENST00000399205.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.153G>A
  hgvsp: ENST00000443703.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.153G>A
  hgvsp: ENST00000332131.4:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.81G>A
  hgvsp: ENST00000446166.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.153G>A
  hgvsp: ENST00000399215.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.228G>A
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala51Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

21-37429424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429424
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429424
    reference: chr 21
allele count: 4
allele frequency: 3.295707341188102e-5
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.176C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.74C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.152C>T
  hgvsp: ENSP00000399998.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.80C>T
  hgvsp: ENSP00000382161.1:p.Ala27Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.227C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.152C>T
  hgvsp: ENSP00000382158.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.152C>T
  hgvsp: ENSP00000329189.4:p.Ala51Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.152C>T
  hgvsp: ENSP00000382163.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.152C>T
  hgvsp: ENSP00000392463.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.152C>T
  hgvsp: ENSP00000396837.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.80C>T
  hgvsp: ENSP00000413318.1:p.Ala27Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.152C>T
  hgvsp: ENSP00000382159.2:p.Ala51Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.80C>T
  hgvsp: ENSP00000382156.1:p.Ala27Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.80C>T
  hgvsp: ENSP00000382152.1:p.Ala27Val
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.80C>T
  hgvsp: ENSP00000394822.1:p.Ala27Val
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala51Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

21-37429433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429433
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429433
    reference: chr 21
allele count: 26
allele frequency: 2.142103875560242e-4
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.167C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.71C>T
  hgvsp: ENSP00000382152.1:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.143C>T
  hgvsp: ENSP00000382159.2:p.Ser48Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.71C>T
  hgvsp: ENSP00000382161.1:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.218C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.65C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.143C>T
  hgvsp: ENSP00000329189.4:p.Ser48Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.71C>T
  hgvsp: ENSP00000413318.1:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.143C>T
  hgvsp: ENSP00000396837.1:p.Ser48Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.143C>T
  hgvsp: ENSP00000399998.1:p.Ser48Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.143C>T
  hgvsp: ENSP00000382163.1:p.Ser48Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.71C>T
  hgvsp: ENSP00000382156.1:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.143C>T
  hgvsp: ENSP00000392463.1:p.Ser48Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.143C>T
  hgvsp: ENSP00000382158.1:p.Ser48Leu
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.71C>T
  hgvsp: ENSP00000394822.1:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9355
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser48Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

21-37429436-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429436
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429436
    reference: chr 21
allele count: 5
allele frequency: 4.11936265221045e-5
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.140A>G
  hgvsp: ENSP00000329189.4:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.68A>G
  hgvsp: ENSP00000382156.1:p.Asp23Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.140A>G
  hgvsp: ENSP00000392463.1:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.68A>G
  hgvsp: ENSP00000394822.1:p.Asp23Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.140A>G
  hgvsp: ENSP00000382159.2:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.68A>G
  hgvsp: ENSP00000382152.1:p.Asp23Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.140A>G
  hgvsp: ENSP00000399998.1:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.164A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.140A>G
  hgvsp: ENSP00000396837.1:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.140A>G
  hgvsp: ENSP00000382158.1:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.215A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.68A>G
  hgvsp: ENSP00000413318.1:p.Asp23Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.140A>G
  hgvsp: ENSP00000382163.1:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.68A>G
  hgvsp: ENSP00000382161.1:p.Asp23Gly
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.62A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp47Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

21-37429438-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429438
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429438
    reference: chr 21
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.138A>G
  hgvsp: ENST00000429161.1:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.66A>G
  hgvsp: ENST00000399212.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.66A>G
  hgvsp: ENST00000399201.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.66A>G
  hgvsp: ENST00000442559.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.138A>G
  hgvsp: ENST00000443703.1:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.162A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.138A>G
  hgvsp: ENST00000332131.4:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.138A>G
  hgvsp: ENST00000424303.1:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.138A>G
  hgvsp: ENST00000399208.2:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.60A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.66A>G
  hgvsp: ENST00000399205.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.138A>G
  hgvsp: ENST00000399207.1:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.138A>G
  hgvsp: ENST00000399215.1:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.66A>G
  hgvsp: ENST00000446166.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.213A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln46Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

21-37429452-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429452
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429452
    reference: chr 21
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.52G>C
  hgvsp: ENSP00000413318.1:p.Ala18Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.124G>C
  hgvsp: ENSP00000382158.1:p.Ala42Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.124G>C
  hgvsp: ENSP00000382159.2:p.Ala42Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.46G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.124G>C
  hgvsp: ENSP00000392463.1:p.Ala42Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.52G>C
  hgvsp: ENSP00000382152.1:p.Ala18Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.52G>C
  hgvsp: ENSP00000382161.1:p.Ala18Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.124G>C
  hgvsp: ENSP00000396837.1:p.Ala42Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.52G>C
  hgvsp: ENSP00000394822.1:p.Ala18Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.52G>C
  hgvsp: ENSP00000382156.1:p.Ala18Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.124G>C
  hgvsp: ENSP00000329189.4:p.Ala42Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.124G>C
  hgvsp: ENSP00000399998.1:p.Ala42Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.124G>C
  hgvsp: ENSP00000382163.1:p.Ala42Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.199G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.148G>C
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala42Pro
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

21-37429485-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429485
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429485
    reference: chr 21
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.91T>C
  hgvsp: ENSP00000382158.1:p.Ser31Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.115T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.19T>C
  hgvsp: ENSP00000382161.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.91T>C
  hgvsp: ENSP00000396837.1:p.Ser31Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.91T>C
  hgvsp: ENSP00000382159.2:p.Ser31Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.19T>C
  hgvsp: ENSP00000382152.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.166T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.91T>C
  hgvsp: ENSP00000399998.1:p.Ser31Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.13T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.91T>C
  hgvsp: ENSP00000329189.4:p.Ser31Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.19T>C
  hgvsp: ENSP00000394822.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.19T>C
  hgvsp: ENSP00000382156.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.91T>C
  hgvsp: ENSP00000382163.1:p.Ser31Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.19T>C
  hgvsp: ENSP00000413318.1:p.Ser7Pro
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.91T>C
  hgvsp: ENSP00000392463.1:p.Ser31Pro
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser31Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

21-37429490-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429490
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429490
    reference: chr 21
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.86A>G
  hgvsp: ENSP00000382159.2:p.His29Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.14A>G
  hgvsp: ENSP00000382152.1:p.His5Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.14A>G
  hgvsp: ENSP00000382156.1:p.His5Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.14A>G
  hgvsp: ENSP00000394822.1:p.His5Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.86A>G
  hgvsp: ENSP00000399998.1:p.His29Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.86A>G
  hgvsp: ENSP00000382158.1:p.His29Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.86A>G
  hgvsp: ENSP00000329189.4:p.His29Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.86A>G
  hgvsp: ENSP00000392463.1:p.His29Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.86A>G
  hgvsp: ENSP00000396837.1:p.His29Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.14A>G
  hgvsp: ENSP00000413318.1:p.His5Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.86A>G
  hgvsp: ENSP00000382163.1:p.His29Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000460704
  gene symbol: SETD4
  hgvsc: ENST00000460704.1:n.8A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.14A>G
  hgvsp: ENSP00000382161.1:p.His5Arg
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.161A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.110A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His29Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum

21-37429506-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429506
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429506
    reference: chr 21
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.94A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-4A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-4A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.74-4A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

21-37429507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429507
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429507
    reference: chr 21
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.93G>A
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.74-5G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

21-37429511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429511
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429511
    reference: chr 21
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.89G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-9G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-9G>A
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9357
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15770
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

21-37429515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429515
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429515
    reference: chr 21
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.85C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-13C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-13C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

21-37429522-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429522
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429522
    reference: chr 21
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.78G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-20G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-20G>C
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

21-37429526-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429526
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429526
    reference: chr 21
allele count: 2
allele frequency: 1.649484536082474e-5
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.74A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-24A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-24A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

21-37429529-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429529
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429529
    reference: chr 21
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.71A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-27A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-27A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

21-37429544-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429544
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429544
    reference: chr 21
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.56A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-42A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-42A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

21-37429546-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429546
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429546
    reference: chr 21
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.54A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-44A>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-44A>T
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

21-37429551-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429551
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429551
    reference: chr 21
allele count: 3
allele frequency: 2.486984779653149e-5
allele num: 120628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-49C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-49C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

21-37429551-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429551
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429551
    reference: chr 21
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.2-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.2-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.2-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.2-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.2-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000485865
  gene symbol: SETD4
  hgvsc: ENST00000485865.1:n.49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-49C>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-49C>A
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

21-37429633-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429633
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429633
    reference: chr 21
allele count: 1
allele frequency: 3.632137149498765e-5
allele num: 27532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.1+49A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-131A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.1+49A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-131A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-131A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-131A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.1+49A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.1+49A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-131A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-131A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-131A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-131A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.1+49A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

21-37429640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429640
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429640
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 24310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-138C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-138C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-138C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-138C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.1+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.1+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-138C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.1+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.1+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-138C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-138C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.1+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-138C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11498
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

21-37429644-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429644
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429644
    reference: chr 21
allele count: 2
allele frequency: 8.986340762041697e-5
allele num: 22256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-142G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-142G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.1+38G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-142G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.1+38G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-142G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-142G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.1+38G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.1+38G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-142G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-142G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-142G>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.1+38G>C
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9802
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

21-37429659-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429659
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429658
    reference: chr 21
allele count: 1
allele frequency: 5.511463844797178e-5
allele num: 18144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.1+22delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-158delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-158delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-158delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.1+22delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-158delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-158delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-158delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-158delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-158delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.1+22delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.1+22delA
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.1+22delA
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: AT
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

21-37429660-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429660
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429660
    reference: chr 21
allele count: 1
allele frequency: 5.603496581867085e-5
allele num: 17846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-158A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-158A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-158A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-158A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.1+22A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-158A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.1+22A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-158A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-158A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.1+22A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.1+22A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.1+22A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-158A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

21-37429662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429662
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429662
    reference: chr 21
allele count: 37
allele frequency: 2.105143377332727e-3
allele num: 17576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-160C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.1+20C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.1+20C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-160C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-160C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-160C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-160C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.1+20C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-160C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-160C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.1+20C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-160C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.1+20C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26722
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

21-37429669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429669
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429669
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 16784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.1+13G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-167G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-167G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-167G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-167G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-167G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-167G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-167G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.1+13G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.1+13G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.1+13G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-167G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.1+13G>A
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21881
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

21-37429670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429670
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429670
    reference: chr 21
allele count: 1
allele frequency: 5.978000956480153e-5
allele num: 16728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-168C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-168C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-168C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-168C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-168C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-168C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.1+12C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-168C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-168C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.1+12C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.1+12C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.1+12C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.1+12C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21925
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

21-37429679-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429679
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429679
    reference: chr 21
allele count: 17085
allele frequency: 9.999414725506263e-1
allele num: 17086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-177C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.1+3C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-177C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-177C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.1+3C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-177C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-177C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.1+3C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-177C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.1+3C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.1+3C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-177C>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-177C>G
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 2.75e1
  variant carriers: 1205
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 2.5e0
  variant carriers: 11806
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 1.75e1
  variant carriers: 1426
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 1154
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 2.25e1
  variant carriers: 1541
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 7.5e0
  variant carriers: 5329
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.25e1
  variant carriers: 770
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
hgvs: c.1+3C>G
num of homozygotes: 8542
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

21-37429688-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429688
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429688
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 14972
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-186T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-186T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-6T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-186T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-6T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-186T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-6T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-6T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-6T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-186T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-186T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-186T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-186T>C
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19075
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

21-37429689-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429689
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429689
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 14878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-187A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-187A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-7A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-7A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-7A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-187A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-7A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-7A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-187A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-187A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-187A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-187A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-187A>C
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18947
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/21-37429694-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429694
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429694
    reference: chr 21
allele count: 1
allele frequency: 6.790710308298248e-5
allele num: 14726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-12T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-192T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-192T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-192T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-192T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-192T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-192T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-12T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-12T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-12T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-192T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-12T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-192T>G
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

21-37429713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429713
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429713
    reference: chr 21
allele count: 2
allele frequency: 1.431024613623354e-4
allele num: 13976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-211G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-211G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-211G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-211G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-211G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-211G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-211G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-211G>A
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

21-37429714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429714
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429714
    reference: chr 21
allele count: 2
allele frequency: 1.444043321299639e-4
allele num: 13850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.74-212C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.74-212C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.74-212C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.74-212C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.74-212C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.149-212C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.74-212C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.74-212C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

21-37429730-GCCAGGAGTTTGAGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37429730
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37429716
    reference: chr 21
allele count: 1
allele frequency: 7.635919364691509e-5
allele num: 13096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: GCCAGGAGTTTGAGC
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/21-37431066-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431066
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431066
    reference: chr 21
allele count: 5
allele frequency: 4.14236479321315e-5
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.73+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-94+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.148+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-94+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.73+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.73+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-94+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.73+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.73+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.73+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-94+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.73+48T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-94+48T>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

21-37431072-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431072
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431072
    reference: chr 21
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.73+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-94+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-94+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-94+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.73+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.73+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.73+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.73+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.73+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.148+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-94+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-94+42C>T
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.73+42C>T
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

21-37431076-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431076
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431076
    reference: chr 21
allele count: 3
allele frequency: 2.484184028352821e-5
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.73+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.73+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.148+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-94+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.73+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-94+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.73+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.73+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.73+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-94+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-94+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-94+38A>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.73+38A>C
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

21-37431082-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431082
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431082
    reference: chr 21
allele count: 1
allele frequency: 8.27841981522567e-6
allele num: 120796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.73+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-94+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.73+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-94+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.73+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.73+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-94+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.73+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.73+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-94+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.73+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.148+32A>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-94+32A>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-37431103-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431103
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431103
    reference: chr 21
allele count: 9
allele frequency: 7.439492130670547e-5
allele num: 120976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.73+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.73+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.73+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.73+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.73+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-94+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-94+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.73+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.73+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.148+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-94+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-94+11T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-94+11T>C
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/21-37431107-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431107
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431107
    reference: chr 21
allele count: 2
allele frequency: 1.652974527662529e-5
allele num: 120994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.73+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-94+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.73+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-94+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.73+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.73+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-94+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.73+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-94+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-94+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.73+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.148+7T>G
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.73+7T>G
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.73+7T>G
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

21-37431107-ACCATACCTCCTCTTGATTCAGAACTTCCGCAGAGTTTTCGTCTTCTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431107
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431060
    reference: chr 21
allele count: 1
allele frequency: 8.264872638312644e-6
allele num: 120994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: ACCATACCTCCTCTTGATTCAGAACTTCCGCAGAGTTTTCGTCTTCTG
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

21-37431109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431109
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431109
    reference: chr 21
allele count: 4
allele frequency: 3.306003702724147e-5
allele num: 120992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-94+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-94+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-94+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-94+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.73+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.73+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.73+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.73+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.73+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.148+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-94+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.73+5G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.73+5G>A
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.73+5G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

21-37431110-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431110
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431110
    reference: chr 21
allele count: 3
allele frequency: 2.479338842975207e-5
allele num: 121000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.73+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.73+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-94+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-94+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.73+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-94+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.148+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-94+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.73+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.73+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.73+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.73+4T>C
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-94+4T>C
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.73+4T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

21-37431119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431119
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431119
    reference: chr 21
allele count: 2
allele frequency: 1.65188231990353e-5
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-99G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.68G>A
  hgvsp: ENSP00000382158.1:p.Arg23Lys
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.68G>A
  hgvsp: ENSP00000399998.1:p.Arg23Lys
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.68G>A
  hgvsp: ENSP00000392463.1:p.Arg23Lys
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.68G>A
  hgvsp: ENSP00000329189.4:p.Arg23Lys
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.68G>A
  hgvsp: ENSP00000396837.1:p.Arg23Lys
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.68G>A
  hgvsp: ENSP00000382159.2:p.Arg23Lys
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.143G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-99G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-99G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-99G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-99G>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.68G>A
  hgvsp: ENSP00000382163.1:p.Arg23Lys
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9486
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg23Lys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

21-37431127-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37431127
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 37431127
    reference: chr 21
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000392463
  ensembl transcript: ENST00000443703
  gene symbol: SETD4
  hgvsc: ENST00000443703.1:c.60T>A
  hgvsp: ENST00000443703.1:c.60T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382163
  ensembl transcript: ENST00000399215
  gene symbol: SETD4
  hgvsc: ENST00000399215.1:c.60T>A
  hgvsp: ENST00000399215.1:c.60T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000399998
  ensembl transcript: ENST00000424303
  gene symbol: SETD4
  hgvsc: ENST00000424303.1:c.60T>A
  hgvsp: ENST00000424303.1:c.60T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000329189
  ensembl transcript: ENST00000332131
  gene symbol: SETD4
  hgvsc: ENST00000332131.4:c.60T>A
  hgvsp: ENST00000332131.4:c.60T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185917
  ensembl transcript: ENST00000481477
  gene symbol: SETD4
  hgvsc: ENST00000481477.1:n.135T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382158
  ensembl transcript: ENST00000399207
  gene symbol: SETD4
  hgvsc: ENST00000399207.1:c.60T>A
  hgvsp: ENST00000399207.1:c.60T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382152
  ensembl transcript: ENST00000399201
  gene symbol: SETD4
  hgvsc: ENST00000399201.1:c.-107T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000396837
  ensembl transcript: ENST00000429161
  gene symbol: SETD4
  hgvsc: ENST00000429161.1:c.60T>A
  hgvsp: ENST00000429161.1:c.60T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382161
  ensembl transcript: ENST00000399212
  gene symbol: SETD4
  hgvsc: ENST00000399212.1:c.-107T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382159
  ensembl transcript: ENST00000399208
  gene symbol: SETD4
  hgvsc: ENST00000399208.2:c.60T>A
  hgvsp: ENST00000399208.2:c.60T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000394822
  ensembl transcript: ENST00000442559
  gene symbol: SETD4
  hgvsc: ENST00000442559.1:c.-107T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000382156
  ensembl transcript: ENST00000399205
  gene symbol: SETD4
  hgvsc: ENST00000399205.1:c.-107T>A
  variant of: http://identifiers.org/hgnc/1258
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185917
  ensembl protein: ENSP00000413318
  ensembl transcript: ENST00000446166
  gene symbol: SETD4
  hgvsc: ENST00000446166.1:c.-107T>A
  variant of: http://identifiers.org/hgnc/1258
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser20Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

GenotypeDepth
all individuals: 561
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 618
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1884
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 756
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6293
bin: 4.75e1
variant carriers: 3

GenotypeDepth
all individuals: 457
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9616
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 4273
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20695
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 2.001455604075691e-3
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.339e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

MQ
type: SiteQuality
SIO_000300: 5.672e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.721e0

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.788e-1

FS
type: SiteQuality
SIO_000300: 1.084e0

DP
type: SiteQuality
SIO_000300: 2.694658e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeDepth
all individuals: 9604
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2931
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1885
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10239
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 756
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6342
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1009
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3962
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20680
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4589
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6185
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.535e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.86e-1

FS
type: SiteQuality
SIO_000300: 3.554e0

VQSLOD
type: SiteQuality
SIO_000300: -1.182e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 2.693945e6

MQRankSum
type: SiteQuality
SIO_000300: -1.318e0

QD
type: SiteQuality
SIO_000300: 1.537e1

GenotypeDepth
all individuals: 1693
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 620
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1901
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 561
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 756
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1365
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1884
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20671
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5682
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.06300734441438e-3
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 1.137e0

QD
type: SiteQuality
SIO_000300: 1.422e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.146e0

MQ
type: SiteQuality
SIO_000300: 5.542e1

DP
type: SiteQuality
SIO_000300: 2.676927e6

VQSLOD
type: SiteQuality
SIO_000300: -1.117e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeDepth
all individuals: 3356
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 697
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5185
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2843
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1191
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1087
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3414
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10224
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1721
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5080
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variant carriers: 0

GenotypeQuality
all individuals: 21858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.317e1

MQRankSum
type: SiteQuality
SIO_000300: -2.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.628e0

DP
type: SiteQuality
SIO_000300: 2.214379e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

GenotypeDepth
all individuals: 5188
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 411
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1087
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 697
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5055
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10216
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

FS
type: SiteQuality
SIO_000300: 3.405e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.871e0

DP
type: SiteQuality
SIO_000300: 2.218003e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeDepth
all individuals: 952
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 531
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1087
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1605
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9328
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
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variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.003093185981561e-5
allele num: 66598
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
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SIO_000300: 5.41e-1

DP
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SIO_000300: 2.218003e6

ClippingRankSum
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FS
type: SiteQuality
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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SIO_000300: -1.871e0

ReadPosRankSum
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SIO_000300: 6.15e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216101179618144e-4
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.081245439065921e-5
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 4.796e0

MQRankSum
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DP
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SIO_000300: 2.219651e6

BaseQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 6.0e1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.621e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

MQ
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SIO_000300: 5.966e1

ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66646
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 6.070908207867897e-5
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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Other
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South Asian
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ClippingRankSum
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ReadPosRankSum
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DP
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FS
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MQRankSum
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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FS
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MQRankSum
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Other
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InbreedingCoeff
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QD
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ClippingRankSum
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DP
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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MQ
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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MQ
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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Other
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South Asian
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Latino
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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DP
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GenotypeDepth
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European (Finnish)
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East Asian
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FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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East Asian
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QD
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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Latino
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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MQ
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ReadPosRankSum
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DP
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MQRankSum
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GenotypeQuality
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Other
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African
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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FS
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QD
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MQ
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InbreedingCoeff
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Latino
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African
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East Asian
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European (Non-Finnish)
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MQ
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

African
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Latino
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Other
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East Asian
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South Asian
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European (Finnish)
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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East Asian
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South Asian
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European (Finnish)
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DP
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VQSLOD
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MQRankSum
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FS
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MQ
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BaseQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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East Asian
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South Asian
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MQ
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ClippingRankSum
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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DP
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QD
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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African
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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Latino
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European (Finnish)
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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FS
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QD
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MQ
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66698
num of homozygotes: 0

European (Finnish)
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African
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Latino
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East Asian
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South Asian
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Other
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ClippingRankSum
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QD
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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Latino
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East Asian
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African
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South Asian
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European (Non-Finnish)
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DP
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BaseQRankSum
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QD
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66674
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Latino
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African
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Other
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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QD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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FS
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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Latino
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South Asian
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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DP
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QD
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MQ
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Other
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Latino
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African
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East Asian
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European (Finnish)
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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African
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South Asian
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European (Finnish)
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VQSLOD
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ReadPosRankSum
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DP
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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InbreedingCoeff
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FS
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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East Asian
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European (Finnish)
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.199999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.226e0

MQ
type: SiteQuality
SIO_000300: 6.034e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

QD
type: SiteQuality
SIO_000300: 1.452e1

DP
type: SiteQuality
SIO_000300: 4.91151e5

GenotypeDepth
all individuals: 20
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 506
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.415227851684121e-4
allele num: 7066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.143e1

FS
type: SiteQuality
SIO_000300: 1.612e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 4.85496e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeDepth
all individuals: 2200
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variant carriers: 3

GenotypeDepth
all individuals: 35
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variant carriers: 0

GenotypeDepth
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 1

GenotypeQuality
all individuals: 1547
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variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 666
bin: 3.25e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 2.25e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 255
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variant carriers: 2

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 6.25e1
variant carriers: 3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 488
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1850
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 548
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.640106241699867e-4
allele num: 1506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.494056248187881e-3
allele num: 6898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.556517178075007e-4
allele num: 7626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.049999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

QD
type: SiteQuality
SIO_000300: 1.229e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 4.80154e5

GenotypeDepth
all individuals: 35
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1063
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
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variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
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variant carriers: 0

GenotypeQuality
all individuals: 21296
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variant carriers: 1

GenotypeQuality
all individuals: 1521
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.75e1
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GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
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variant carriers: 1

GenotypeQuality
all individuals: 1606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
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GenotypeQuality
all individuals: 523
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.59948e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.882e0

QD
type: SiteQuality
SIO_000300: 3.216e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

GenotypeDepth
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1600
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21398
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 166
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variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
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GenotypeQuality
all individuals: 2034
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 520
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 643
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.331203407880724e-4
allele num: 7512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.809999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

FS
type: SiteQuality
SIO_000300: 2.614e0

VQSLOD
type: SiteQuality
SIO_000300: -1.607e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.69e-1

DP
type: SiteQuality
SIO_000300: 4.6007e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeDepth
all individuals: 148
bin: 5.25e1
variant carriers: 148

GenotypeDepth
all individuals: 1100
bin: 9.75e1
variant carriers: 1100

GenotypeDepth
all individuals: 69
bin: 6.25e1
variant carriers: 69

GenotypeDepth
all individuals: 267
bin: 4.25e1
variant carriers: 267

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 306

GenotypeQuality
all individuals: 290
bin: 7.25e1
variant carriers: 290

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 21

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 192

GenotypeQuality
all individuals: 321
bin: 2.75e1
variant carriers: 321

GenotypeQuality
all individuals: 489
bin: 3.25e1
variant carriers: 489

GenotypeQuality
all individuals: 608
bin: 5.25e1
variant carriers: 608

GenotypeQuality
all individuals: 4225
bin: 1.25e1
variant carriers: 4225

GenotypeQuality
all individuals: 7561
bin: 7.5e0
variant carriers: 7561

GenotypeQuality
all individuals: 640
bin: 6.25e1
variant carriers: 640

GenotypeQuality
all individuals: 447
bin: 3.75e1
variant carriers: 447

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 224

GenotypeQuality
all individuals: 507
bin: 4.75e1
variant carriers: 507

GenotypeQuality
all individuals: 2870
bin: 9.75e1
variant carriers: 2870

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 344

GenotypeQuality
all individuals: 535
bin: 7.75e1
variant carriers: 535

GenotypeQuality
all individuals: 1278
bin: 2.25e1
variant carriers: 1278

GenotypeQuality
all individuals: 611
bin: 6.75e1
variant carriers: 611

GenotypeQuality
all individuals: 3734
bin: 1.75e1
variant carriers: 3734

GenotypeQuality
all individuals: 479
bin: 8.25e1
variant carriers: 479

East Asian
type: Population
allele count: 638
allele frequency: 1.0e0
allele num: 638
num of homozygotes: 319

Latino
type: Population
allele count: 498
allele frequency: 1.0e0
allele num: 498
num of homozygotes: 249

South Asian
type: Population
allele count: 7710
allele frequency: 1.0e0
allele num: 7710
num of homozygotes: 3855

European (Non-Finnish)
type: Population
allele count: 6573
allele frequency: 9.998478856099787e-1
allele num: 6574
num of homozygotes: 3286

African
type: Population
allele count: 1418
allele frequency: 1.0e0
allele num: 1418
num of homozygotes: 709

European (Finnish)
type: Population
allele count: 68
allele frequency: 1.0e0
allele num: 68
num of homozygotes: 34

Other
type: Population
allele count: 180
allele frequency: 1.0e0
allele num: 180
num of homozygotes: 90

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.48e-2

DP
type: SiteQuality
SIO_000300: 4.87327e5

QD
type: SiteQuality
SIO_000300: 3.388e1

GenotypeDepth
all individuals: 76
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1695
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
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GenotypeQuality
all individuals: 17141
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 5.25e1
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GenotypeQuality
all individuals: 188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.25e1
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GenotypeQuality
all individuals: 2486
bin: 6.25e1
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GenotypeQuality
all individuals: 344
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
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GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.25e1
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GenotypeQuality
all individuals: 1998
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
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GenotypeQuality
all individuals: 505
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.56e-2

DP
type: SiteQuality
SIO_000300: 3.06974e5

QD
type: SiteQuality
SIO_000300: 2.531e1

GenotypeDepth
all individuals: 84
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
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variant carriers: 0

GenotypeDepth
all individuals: 47
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1985
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16817
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 242
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 2.563e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.413e0

DP
type: SiteQuality
SIO_000300: 3.05421e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.679999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.805054151624549e-4
allele num: 5540
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.244e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

QD
type: SiteQuality
SIO_000300: 9.35e0

VQSLOD
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SIO_000300: -1.946e0

FS
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SIO_000300: 7.804e0

DP
type: SiteQuality
SIO_000300: 2.9762e5

ClippingRankSum
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SIO_000300: -3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
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SIO_000300: -7.7e-2

BaseQRankSum
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SIO_000300: -1.175e0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 3.075976622577669e-4
allele num: 6502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1088
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
SIO_000300: 9.49e0

BaseQRankSum
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SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.528e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-2

FS
type: SiteQuality
SIO_000300: 8.843999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.71854e5

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 111
bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1082
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.825554705432288e-4
allele num: 5228
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.250999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.09e1

FS
type: SiteQuality
SIO_000300: 8.114000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

DP
type: SiteQuality
SIO_000300: 2.69954e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.328358208955224e-4
allele num: 1072
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.198e0

ClippingRankSum
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SIO_000300: -1.256e0

BaseQRankSum
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -3.33e-1

MQ
type: SiteQuality
SIO_000300: 5.206e1

FS
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SIO_000300: 1.601e0

DP
type: SiteQuality
SIO_000300: 2.59658e5

InbreedingCoeff
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SIO_000300: -8.790000000000001e-2

VQSLOD
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SIO_000300: -8.487e-1

QD
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SIO_000300: 3.06e0

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.078059591233686e-4
allele num: 16244
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.94e1

DP
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SIO_000300: 4.347224e6

FS
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
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SIO_000300: 3.04e-1

QD
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SIO_000300: 1.498e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505072092953252e-5
allele num: 66442
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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East Asian
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.22e-1

FS
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VQSLOD
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InbreedingCoeff
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SIO_000300: 5.9e-3

ReadPosRankSum
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DP
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MQRankSum
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QD
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BaseQRankSum
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MQ
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SIO_000300: 5.979e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49715
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.475440222428174e-4
allele num: 8632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.28e-1

DP
type: SiteQuality
SIO_000300: 4.352989e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e0

FS
type: SiteQuality
SIO_000300: 1.421e0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.592e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504528631179851e-5
allele num: 66466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 3.04e0

BaseQRankSum
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SIO_000300: 2.73e0

VQSLOD
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FS
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DP
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SIO_000300: 4.355667e6

QD
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SIO_000300: 1.775e1

ClippingRankSum
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SIO_000300: 5.79e-1

ReadPosRankSum
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SIO_000300: -1.217e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 9
allele frequency: 5.486466715435259e-4
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

VQSLOD
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SIO_000300: 2.57e0

ReadPosRankSum
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SIO_000300: 5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e0

QD
type: SiteQuality
SIO_000300: 1.506e1

DP
type: SiteQuality
SIO_000300: 4.364911e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006433768264085e-5
allele num: 66524
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.35e0

FS
type: SiteQuality
SIO_000300: 5.237e0

BaseQRankSum
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SIO_000300: 2.61e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.88e-1

VQSLOD
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SIO_000300: -8.154e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 4.365325e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 1.731601731601732e-4
allele num: 11550
num of homozygotes: 0

South Asian
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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allele num: 8646
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South Asian
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Other
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49714
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004536850644473e-5
allele num: 66566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.367187e6

MQ
type: SiteQuality
SIO_000300: 5.989e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.286e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.2e1

VQSLOD
type: SiteQuality
SIO_000300: -5.218e-1

GenotypeDepth
all individuals: 4291
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3829
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2981
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1755
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9483
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49713
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.844e1

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

DP
type: SiteQuality
SIO_000300: 4.367538e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0