22-20100245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100245
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100245
    reference: chr 22
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1719G>A
  hgvsp: ENST00000252136.7:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.272G>A
  hgvsp: ENST00000444256.1:c.272G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1773G>A
  hgvsp: ENST00000439169.2:c.1773G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1719G>A
  hgvsp: ENST00000403707.3:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.341G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.431G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.646G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.318G>A
  hgvsp: ENST00000444845.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*52G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37883
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu573Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

22-20100251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100251
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100251
    reference: chr 22
allele count: 1
allele frequency: 8.273214640280627e-6
allele num: 120872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.266G>A
  hgvsp: ENST00000444256.1:c.266G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*46G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.335G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.640G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.312G>A
  hgvsp: ENST00000444845.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.425G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1767G>A
  hgvsp: ENST00000439169.2:c.1767G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1713G>A
  hgvsp: ENST00000252136.7:c.1713G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1713G>A
  hgvsp: ENST00000403707.3:c.1713G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7695
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val571Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

22-20100257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100257
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100257
    reference: chr 22
allele count: 9
allele frequency: 7.449467776913271e-5
allele num: 120814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.260G>A
  hgvsp: ENST00000444256.1:c.260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.306G>A
  hgvsp: ENST00000444845.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1707G>A
  hgvsp: ENST00000252136.7:c.1707G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.634G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.329G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1761G>A
  hgvsp: ENST00000439169.2:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1707G>A
  hgvsp: ENST00000403707.3:c.1707G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.419G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*40G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val569Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

22-20100266-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100266
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100266
    reference: chr 22
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.297C>G
  hgvsp: ENST00000444845.1:c.297C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1698C>G
  hgvsp: ENST00000252136.7:c.1698C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.410C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.320C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*31C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.251C>G
  hgvsp: ENST00000444256.1:c.251C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.625C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1698C>G
  hgvsp: ENST00000403707.3:c.1698C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1752C>G
  hgvsp: ENST00000439169.2:c.1752C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val566Val
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

22-20100267-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100267
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100267
    reference: chr 22
allele count: 1
allele frequency: 8.290911502810618e-6
allele num: 120614
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1697T>A
  hgvsp: ENSP00000252136.7:p.Val566Asp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1697T>A
  hgvsp: ENSP00000385807.3:p.Val566Asp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*30T>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1751T>A
  hgvsp: ENSP00000395738.2:p.Val584Asp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.250T>A
  hgvsp: ENSP00000392261.1:p.Val84Asp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.319T>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.296T>A
  hgvsp: ENSP00000397744.1:p.Val99Asp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.624T>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.409T>A
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val566Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

22-20100269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100269
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100269
    reference: chr 22
allele count: 22
allele frequency: 1.824393803695227e-4
allele num: 120588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*28G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1695G>A
  hgvsp: ENST00000252136.7:c.1695G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.294G>A
  hgvsp: ENST00000444845.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1695G>A
  hgvsp: ENST00000403707.3:c.1695G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.248G>A
  hgvsp: ENST00000444256.1:c.248G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.407G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.317G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1749G>A
  hgvsp: ENST00000439169.2:c.1749G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.622G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12754
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro565Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

22-20100270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100270
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100270
    reference: chr 22
allele count: 1
allele frequency: 8.295450774795103e-6
allele num: 120548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1748C>T
  hgvsp: ENSP00000395738.2:p.Pro583Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1694C>T
  hgvsp: ENSP00000252136.7:p.Pro565Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.247C>T
  hgvsp: ENSP00000392261.1:p.Pro83Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.316C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.406C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.293C>T
  hgvsp: ENSP00000397744.1:p.Pro98Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.621C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*27C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1694C>T
  hgvsp: ENSP00000385807.3:p.Pro565Leu
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro565Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/22-20100273-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100273
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100273
    reference: chr 22
allele count: 13
allele frequency: 1.078623344728021e-4
allele num: 120524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.313G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.403G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1691G>T
  hgvsp: ENSP00000252136.7:p.Arg564Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.244G>T
  hgvsp: ENSP00000392261.1:p.Arg82Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1691G>T
  hgvsp: ENSP00000385807.3:p.Arg564Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.290G>T
  hgvsp: ENSP00000397744.1:p.Arg97Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.618G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1745G>T
  hgvsp: ENSP00000395738.2:p.Arg582Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*24G>T
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg564Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

22-20100273-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100273
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100273
    reference: chr 22
allele count: 6
allele frequency: 4.978261591052404e-5
allele num: 120524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1745G>A
  hgvsp: ENSP00000395738.2:p.Arg582Gln
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.244G>A
  hgvsp: ENSP00000392261.1:p.Arg82Gln
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.403G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1691G>A
  hgvsp: ENSP00000385807.3:p.Arg564Gln
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.313G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*24G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.618G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.290G>A
  hgvsp: ENSP00000397744.1:p.Arg97Gln
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1691G>A
  hgvsp: ENSP00000252136.7:p.Arg564Gln
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg564Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

22-20100274-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100274
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100274
    reference: chr 22
allele count: 3
allele frequency: 2.490329221523085e-5
allele num: 120466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.243C>T
  hgvsp: ENSP00000392261.1:p.Arg82Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*23C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.617C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1690C>T
  hgvsp: ENSP00000252136.7:p.Arg564Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1690C>T
  hgvsp: ENSP00000385807.3:p.Arg564Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1744C>T
  hgvsp: ENSP00000395738.2:p.Arg582Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.312C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.289C>T
  hgvsp: ENSP00000397744.1:p.Arg97Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.402C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg564Trp
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

22-20100278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100278
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100278
    reference: chr 22
allele count: 2
allele frequency: 1.661460756296936e-5
allele num: 120376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*19C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1740C>T
  hgvsp: ENST00000439169.2:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.285C>T
  hgvsp: ENST00000444845.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.613C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1686C>T
  hgvsp: ENST00000403707.3:c.1686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1686C>T
  hgvsp: ENST00000252136.7:c.1686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.239C>T
  hgvsp: ENST00000444256.1:c.239C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.308C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.398C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro562Pro
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

22-20100280-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100280
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100280
    reference: chr 22
allele count: 1
allele frequency: 8.313104778372627e-6
allele num: 120292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*17C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1738C>G
  hgvsp: ENSP00000395738.2:p.Pro580Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1684C>G
  hgvsp: ENSP00000385807.3:p.Pro562Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.396C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.237C>G
  hgvsp: ENSP00000392261.1:p.Pro80Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1684C>G
  hgvsp: ENSP00000252136.7:p.Pro562Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.306C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.283C>G
  hgvsp: ENSP00000397744.1:p.Pro95Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.611C>G
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro562Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

22-20100283-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100283
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100283
    reference: chr 22
allele count: 2
allele frequency: 1.663948883490299e-5
allele num: 120196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1735A>G
  hgvsp: ENSP00000395738.2:p.Ile579Val
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.303A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*14A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.393A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1681A>G
  hgvsp: ENSP00000385807.3:p.Ile561Val
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.608A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1681A>G
  hgvsp: ENSP00000252136.7:p.Ile561Val
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.234A>G
  hgvsp: ENSP00000392261.1:p.Ile79Val
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.280A>G
  hgvsp: ENSP00000397744.1:p.Ile94Val
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile561Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

22-20100284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100284
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100284
    reference: chr 22
allele count: 7
allele frequency: 5.825953791863639e-5
allele num: 120152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.279C>T
  hgvsp: ENST00000444845.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.302C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1734C>T
  hgvsp: ENST00000439169.2:c.1734C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.233C>T
  hgvsp: ENST00000444256.1:c.233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.392C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*13C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1680C>T
  hgvsp: ENST00000403707.3:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.607C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1680C>T
  hgvsp: ENST00000252136.7:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34472
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7537
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly560Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

22-20100286-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100286
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100286
    reference: chr 22
allele count: 2
allele frequency: 1.666444474070124e-5
allele num: 120016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.231G>A
  hgvsp: ENSP00000392261.1:p.Gly78Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1678G>A
  hgvsp: ENSP00000252136.7:p.Gly560Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.277G>A
  hgvsp: ENSP00000397744.1:p.Gly93Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1678G>A
  hgvsp: ENSP00000385807.3:p.Gly560Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1732G>A
  hgvsp: ENSP00000395738.2:p.Gly578Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.390G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.605G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*11G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.300G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly560Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

22-20100287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100287
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100287
    reference: chr 22
allele count: 1
allele frequency: 8.334722453742291e-6
allele num: 119980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1677G>A
  hgvsp: ENST00000403707.3:c.1677G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.276G>A
  hgvsp: ENST00000444845.1:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1677G>A
  hgvsp: ENST00000252136.7:c.1677G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1731G>A
  hgvsp: ENST00000439169.2:c.1731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.389G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.604G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.230G>A
  hgvsp: ENST00000444256.1:c.230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.299G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*10G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys559Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

22-20100290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100290
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100290
    reference: chr 22
allele count: 1
allele frequency: 8.34125752798492e-6
allele num: 119886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.273G>A
  hgvsp: ENST00000444845.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.227G>A
  hgvsp: ENST00000444256.1:c.227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*7G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1728G>A
  hgvsp: ENST00000439169.2:c.1728G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.386G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1674G>A
  hgvsp: ENST00000252136.7:c.1674G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.601G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.296G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1674G>A
  hgvsp: ENST00000403707.3:c.1674G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36090
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val558Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

22-20100291-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100291
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100291
    reference: chr 22
allele count: 5
allele frequency: 4.174668113884946e-5
allele num: 119770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.600T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.272T>C
  hgvsp: ENSP00000397744.1:p.Val91Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1727T>C
  hgvsp: ENSP00000395738.2:p.Val576Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1673T>C
  hgvsp: ENSP00000252136.7:p.Val558Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*6T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1673T>C
  hgvsp: ENSP00000385807.3:p.Val558Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.226T>C
  hgvsp: ENSP00000392261.1:p.Val76Ala
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.295T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.385T>C
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34178
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val558Ala
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

22-20100293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100293
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100293
    reference: chr 22
allele count: 2
allele frequency: 1.670871693762636e-5
allele num: 119698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.270G>A
  hgvsp: ENST00000444845.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1725G>A
  hgvsp: ENST00000439169.2:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.224G>A
  hgvsp: ENST00000444256.1:c.224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1671G>A
  hgvsp: ENST00000403707.3:c.1671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1671G>A
  hgvsp: ENST00000252136.7:c.1671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.598G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.293G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.383G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*4G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg557Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

22-20100294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100294
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100294
    reference: chr 22
allele count: 1
allele frequency: 8.361483661660925e-6
allele num: 119596
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1670G>A
  hgvsp: ENSP00000252136.7:p.Arg557Gln
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.597G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.269G>A
  hgvsp: ENSP00000397744.1:p.Arg90Gln
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1724G>A
  hgvsp: ENSP00000395738.2:p.Arg575Gln
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.382G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.223G>A
  hgvsp: ENSP00000392261.1:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*3G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1670G>A
  hgvsp: ENSP00000385807.3:p.Arg557Gln
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.292G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg557Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

22-20100295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100295
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100295
    reference: chr 22
allele count: 5
allele frequency: 4.184030392796773e-5
allele num: 119502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.596C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1669C>T
  hgvsp: ENSP00000385807.3:p.Arg557Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.222C>T
  hgvsp: ENSP00000392261.1:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1723C>T
  hgvsp: ENSP00000395738.2:p.Arg575Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.268C>T
  hgvsp: ENSP00000397744.1:p.Arg90Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.291C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1669C>T
  hgvsp: ENSP00000252136.7:p.Arg557Trp
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.381C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.*2C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg557Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

22-20100302-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100302
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100302
    reference: chr 22
allele count: 1
allele frequency: 8.385462961410099e-6
allele num: 119254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1716A>G
  hgvsp: ENST00000439169.2:c.1716A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1662A>G
  hgvsp: ENST00000403707.3:c.1662A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.261A>G
  hgvsp: ENST00000444845.1:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1662A>G
  hgvsp: ENST00000252136.7:c.1662A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.374A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.589A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1684A>G
  hgvsp: ENSP00000384968.3:p.Ile562Val
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.284A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.215A>G
  hgvsp: ENST00000444256.1:c.215A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile562Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

22-20100305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100305
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100305
    reference: chr 22
allele count: 1
allele frequency: 8.399690891375198e-6
allele num: 119052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1659C>T
  hgvsp: ENST00000403707.3:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1681C>T
  hgvsp: ENSP00000384968.3:p.Pro561Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.258C>T
  hgvsp: ENST00000444845.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.212C>T
  hgvsp: ENST00000444256.1:c.212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.586C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1659C>T
  hgvsp: ENST00000252136.7:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.281C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.371C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1713C>T
  hgvsp: ENST00000439169.2:c.1713C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro561Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS

22-20100308-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100308
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100308
    reference: chr 22
allele count: 2
allele frequency: 1.68123739071957e-5
allele num: 118960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.583A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1656A>G
  hgvsp: ENST00000403707.3:c.1656A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.255A>G
  hgvsp: ENST00000444845.1:c.255A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1678A>G
  hgvsp: ENSP00000384968.3:p.Ser560Gly
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.209A>G
  hgvsp: ENST00000444256.1:c.209A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1656A>G
  hgvsp: ENST00000252136.7:c.1656A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.278A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1710A>G
  hgvsp: ENST00000439169.2:c.1710A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.368A>G
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser560Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

22-20100317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100317
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100317
    reference: chr 22
allele count: 2
allele frequency: 1.693222032205083e-5
allele num: 118118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647C>T
  hgvsp: ENST00000252136.7:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200C>T
  hgvsp: ENST00000444256.1:c.200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1669C>T
  hgvsp: ENSP00000384968.3:p.Pro557Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701C>T
  hgvsp: ENST00000439169.2:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647C>T
  hgvsp: ENST00000403707.3:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.574C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246C>T
  hgvsp: ENST00000444845.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro557Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

22-20100320-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100320
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100320
    reference: chr 22
allele count: 1
allele frequency: 8.473858147614609e-6
allele num: 118010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-3C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-3C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.571C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-3C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-3C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1666C>T
  hgvsp: ENSP00000384968.3:p.Gln556Ter
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-3C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-3C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-3C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7220
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln556Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

22-20100322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100322
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100322
    reference: chr 22
allele count: 1
allele frequency: 8.518322912584971e-6
allele num: 117394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-5C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-5C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-5C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-5C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-5C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-5C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1664C>T
  hgvsp: ENSP00000384968.3:p.Pro555Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.569C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-5C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro555Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

22-20100324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100324
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100324
    reference: chr 22
allele count: 3
allele frequency: 2.551584533995611e-5
allele num: 117574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-7C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-7C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-7C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1662C>T
  hgvsp: ENST00000404751.3:c.1662C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-7C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-7C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.567C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-7C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-7C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1647-7C>T
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

22-20100325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100325
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100325
    reference: chr 22
allele count: 1
allele frequency: 8.502678343678259e-6
allele num: 117610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-8C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-8C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-8C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1661C>T
  hgvsp: ENSP00000384968.3:p.Pro554Leu
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-8C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.566C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-8C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-8C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-8C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro554Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

22-20100326-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100326
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100327
    reference: chr 22
allele count: 5
allele frequency: 4.251266877529504e-5
allele num: 117612
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-10_1647-9insT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.564_565insT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-10_359-9insT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-10_200-9insT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-10_269-9insT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1659_1660insT
  hgvsp: ENSP00000384968.3:p.Pro554SerfsTer13
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-10_1701-9insT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-10_246-9insT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-10_1647-9insT
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31421
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31961
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro554SerfsTer13
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

22-20100327-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100327
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100327
    reference: chr 22
allele count: 5
allele frequency: 4.256913227080779e-5
allele num: 117456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-10C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1659C>T
  hgvsp: ENST00000404751.3:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.564C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-10C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-10C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-10C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-10C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-10C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-10C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11782
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31261
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe553Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

22-20100327-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100327
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100326
    reference: chr 22
allele count: 1
allele frequency: 8.513826454161559e-6
allele num: 117456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-11delT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1658delT
  hgvsp: ENSP00000384968.3:p.Phe553SerfsTer81
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-11delT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-11delT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-11delT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.563delT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-11delT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-11delT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-11delT
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe553SerfsTer81
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: GA
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

22-20100331-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100331
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100332
    reference: chr 22
allele count: 1
allele frequency: 8.528493697443158e-6
allele num: 117254
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-15dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-15dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-15dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.559dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-15dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1654dupC
  hgvsp: ENSP00000384968.3:p.Leu552ProfsTer15
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-15dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-15dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-15dupC
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu552ProfsTer15
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

22-20100331-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100331
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100330
    reference: chr 22
allele count: 18
allele frequency: 1.535128865539768e-4
allele num: 117254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-15delC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-15delC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-15delC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-15delC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-15delC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-15delC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1654delC
  hgvsp: ENSP00000384968.3:p.Leu552PhefsTer82
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.559delC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-15delC
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11754
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30866
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu552PhefsTer82
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: AG
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

22-20100332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100332
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100332
    reference: chr 22
allele count: 1
allele frequency: 8.524567804412315e-6
allele num: 117308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-15C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-15C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-15C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-15C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.559C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1654C>T
  hgvsp: ENSP00000384968.3:p.Leu552Phe
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-15C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-15C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-15C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu552Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

22-20100333-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100333
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100333
    reference: chr 22
allele count: 2
allele frequency: 1.703867779860283e-5
allele num: 117380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-16C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-16C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1653C>A
  hgvsp: ENST00000404751.3:c.1653C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-16C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-16C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-16C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-16C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-16C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.558C>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31691
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro551Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

22-20100336-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100336
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100336
    reference: chr 22
allele count: 1
allele frequency: 8.521081154776918e-6
allele num: 117356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-19C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-19C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-19C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1650C>A
  hgvsp: ENST00000404751.3:c.1650C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-19C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-19C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.555C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-19C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-19C>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6955
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala550Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

22-20100338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100338
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100338
    reference: chr 22
allele count: 44
allele frequency: 3.754906980713432e-4
allele num: 117180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1648G>A
  hgvsp: ENSP00000384968.3:p.Ala550Thr
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-21G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-21G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-21G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-21G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-21G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-21G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.553G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-21G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30441
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11763
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala550Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

22-20100339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100339
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100339
    reference: chr 22
allele count: 9
allele frequency: 7.693885925318014e-5
allele num: 116976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-22C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-22C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-22C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.552C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-22C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647C>T
  hgvsp: ENST00000404751.3:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-22C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-22C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-22C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11839
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3773
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1647C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

22-20100344-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100344
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100344
    reference: chr 22
allele count: 1
allele frequency: 8.532132009146445e-6
allele num: 117204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-5C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-27C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.547C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-27C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-27C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-27C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-27C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-27C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-27C>G
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1647-5C>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

22-20100346-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100346
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100346
    reference: chr 22
allele count: 2
allele frequency: 1.709430930443255e-5
allele num: 116998
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-7A>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-29A>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-29A>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-29A>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.545A>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-29A>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-29A>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-29A>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-29A>C
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1647-7A>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/22-20100348-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100348
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100348
    reference: chr 22
allele count: 1
allele frequency: 8.532860044029558e-6
allele num: 117194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-31T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-9T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-31T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-31T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-31T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-31T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-31T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-31T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.543T>G
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

22-20100351-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100351
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100351
    reference: chr 22
allele count: 3
allele frequency: 2.562175457775349e-5
allele num: 117088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-12G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.540G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-34G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3816
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

22-20100352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100352
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100352
    reference: chr 22
allele count: 1
allele frequency: 8.539126276599378e-6
allele num: 117108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.539C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-35C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-35C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-35C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-35C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-35C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-35C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-35C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-13C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

22-20100352-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100352
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100352
    reference: chr 22
allele count: 1
allele frequency: 8.539126276599378e-6
allele num: 117108
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-35C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.539C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-35C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-35C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-35C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-35C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-35C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-13C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-35C>G
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3828
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

22-20100352-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100352
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100352
    reference: chr 22
allele count: 1
allele frequency: 8.539126276599378e-6
allele num: 117108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.539C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-35C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-35C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-35C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-35C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-35C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-35C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-35C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-13C>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

22-20100357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100357
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100357
    reference: chr 22
allele count: 3
allele frequency: 2.559464901204655e-5
allele num: 117212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-40C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-40C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-40C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-40C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.534C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-40C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-40C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-40C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-18C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12225
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum

22-20100360-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100360
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100360
    reference: chr 22
allele count: 1
allele frequency: 8.529512111907199e-6
allele num: 117240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.531T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-43T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-43T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-43T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-43T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-43T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-43T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-43T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-21T>C
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

22-20100363-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100363
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100361
    reference: chr 22
allele count: 1
allele frequency: 8.537959769133568e-6
allele num: 117124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-48_359-47delCT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-48_1647-47delCT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-48_269-47delCT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-48_200-47delCT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-26_1647-25delCT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.526_527delCT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-48_246-47delCT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-48_1701-47delCT
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-48_1647-47delCT
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: CAG
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

22-20100364-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100364
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100364
    reference: chr 22
allele count: 3
allele frequency: 2.559858013208867e-5
allele num: 117194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-47T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-47T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.527T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-47T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-47T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-47T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-47T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-25T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-47T>C
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30103
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7270
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

22-20100371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100371
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100371
    reference: chr 22
allele count: 60
allele frequency: 5.11465348222658e-4
allele num: 117310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-54G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-54G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-54G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-54G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.520G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-32G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-54G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-54G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-54G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30186
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12319
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3944
  bin: 9.75e1
  variant carriers: 60
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

22-20100373-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100373
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100373
    reference: chr 22
allele count: 6
allele frequency: 5.115176729355999e-5
allele num: 117298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1647-56A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-56A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-56A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.359-56A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1701-56A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-34A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1647-56A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.518A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.269-56A>G
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12368
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

22-20100383-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100383
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100383
    reference: chr 22
allele count: 1
allele frequency: 8.50152177239726e-6
allele num: 117626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+51C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.508C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+51C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1647-44C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-66C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-66C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+51C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+51C>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+51C>G
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3983
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD

22-20100387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100387
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100387
    reference: chr 22
allele count: 1335
allele frequency: 1.130436255249966e-2
allele num: 118096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+47C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+47C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+47C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+47C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-70C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-70C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+47C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.504C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+47C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 1.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 3.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 4.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 12483
  bin: 2.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 30297
  bin: 2.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5177
  bin: 9.75e1
  variant carriers: 1239
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 8.75e1
  variant carriers: 4
num of homozygotes: 65
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS

22-20100393-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100393
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100393
    reference: chr 22
allele count: 1
allele frequency: 8.45522955948254e-6
allele num: 118270
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+41A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+41A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+41A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+41A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.246-76A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.498A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-76A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+41A>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+41A>G
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4792
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-20100399-GCCTAGCCCCCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100399
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100388
    reference: chr 22
allele count: 26
allele frequency: 2.189990060814339e-4
allele num: 118722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32367
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: GCCTAGCCCCCA
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

22-20100400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100400
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100400
    reference: chr 22
allele count: 2
allele frequency: 1.685289111347052e-5
allele num: 118674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.491G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-83G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+79G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+34G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+34G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4822
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

22-20100408-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100408
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100408
    reference: chr 22
allele count: 1
allele frequency: 8.39545973537511e-6
allele num: 119112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+26G>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.483G>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-91G>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+26G>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+26G>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+71G>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+26G>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+26G>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+26G>C
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

22-20100409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100409
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100409
    reference: chr 22
allele count: 18395
allele frequency: 1.539279019949123e-1
allele num: 119504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+25G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+25G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-92G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+25G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.482G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+25G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+70G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+25G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+25G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 5.25e1
  variant carriers: 1162
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 8.75e1
  variant carriers: 896
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.25e1
  variant carriers: 756
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 6.75e1
  variant carriers: 1357
genotype depth: GenotypeDepth
  all individuals: 23014
  bin: 2.25e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.25e1
  variant carriers: 998
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 1005
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 2.75e1
  variant carriers: 425
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 1300
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 9.75e1
  variant carriers: 2274
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 3.25e1
  variant carriers: 524
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 7.75e1
  variant carriers: 1174
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 660
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 4.25e1
  variant carriers: 856
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.25e1
  variant carriers: 1254
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 5.75e1
  variant carriers: 1295
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 20
num of homozygotes: 1711
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

22-20100419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100419
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100419
    reference: chr 22
allele count: 1
allele frequency: 8.326949338840222e-6
allele num: 120092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+60G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+15G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+15G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1094G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-102G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+15G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+15G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.472G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+15G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+15G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

22-20100421-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100421
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100422
    reference: chr 22
allele count: 1
allele frequency: 8.321129010784183e-6
allele num: 120176
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+57dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.469dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+12dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+12dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-105dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+12dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1091dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+12dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+12dupC
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+12dupC
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

22-20100422-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100422
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100422
    reference: chr 22
allele count: 1
allele frequency: 8.316008316008316e-6
allele num: 120250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1091C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-105C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+12C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+12C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+57C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+12C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+12C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.469C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+12C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+12C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

22-20100422-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100422
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100422
    reference: chr 22
allele count: 1
allele frequency: 8.316008316008316e-6
allele num: 120250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.469C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-105C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+12C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+12C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1091C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+12C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+12C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+57C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+12C>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+12C>A
  variant of: http://identifiers.org/hgnc/24974
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

22-20100426-ACACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100426
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100422
    reference: chr 22
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-113_200-110delAGTG
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+4_358+7delAGTG
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+4_1646+7delAGTG
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+4_268+7delAGTG
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+4_1646+7delAGTG
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+4_1700+7delAGTG
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+49_245+52delAGTG
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+4_1646+7delAGTG
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.461_464delAGTG
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1083_1086delAGTG
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1646+4_1646+7delAGTG
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: ACACT
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/22-20100427-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100427
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100427
    reference: chr 22
allele count: 1
allele frequency: 8.296964970213896e-6
allele num: 120526
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+7G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+7G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+7G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+52G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.464G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1086G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+7G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-110G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+7G>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+7G>T
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1646+7G>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/22-20100428-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100428
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100428
    reference: chr 22
allele count: 5
allele frequency: 4.14621202069789e-5
allele num: 120592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.463T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+6T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+51T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-111T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+6T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+6T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+6T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1085T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+6T>G
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+6T>G
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1646+6T>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

22-20100428-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100428
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100428
    reference: chr 22
allele count: 1
allele frequency: 8.29242404139578e-6
allele num: 120592
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+6T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1085T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+6T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+6T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+6T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.463T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+6T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+6T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+51T>C
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-111T>C
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1646+6T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

22-20100433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100433
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100433
    reference: chr 22
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1700+1G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.358+1G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1646+1G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1646+1G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.458G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-116G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1646+1G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.268+1G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1080G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+46G>A
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1646+1G>A
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

22-20100445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100445
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100445
    reference: chr 22
allele count: 1
allele frequency: 8.276090374906894e-6
allele num: 120830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1635C>T
  hgvsp: ENST00000403707.3:c.1635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1068C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.347C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1635C>T
  hgvsp: ENST00000404751.3:c.1635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.257C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+34C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1635C>T
  hgvsp: ENST00000252136.7:c.1635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.446C>T
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1689C>T
  hgvsp: ENST00000439169.2:c.1689C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-128C>T
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly545Gly
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

22-20100447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 20100447
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 20100447
    reference: chr 22
allele count: 2
allele frequency: 1.654889370645572e-5
allele num: 120854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487378
  gene symbol: TRMT2A
  hgvsc: ENST00000487378.1:n.345G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000392261
  ensembl transcript: ENST00000444256
  gene symbol: TRMT2A
  hgvsc: ENST00000444256.1:c.200-130G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000494820
  gene symbol: TRMT2A
  hgvsc: ENST00000494820.1:n.1066G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000385807
  ensembl transcript: ENST00000403707
  gene symbol: TRMT2A
  hgvsc: ENST00000403707.3:c.1633G>A
  hgvsp: ENSP00000385807.3:p.Gly545Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000252136
  ensembl transcript: ENST00000252136
  gene symbol: TRMT2A
  hgvsc: ENST00000252136.7:c.1633G>A
  hgvsp: ENSP00000252136.7:p.Gly545Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000487668
  gene symbol: TRMT2A
  hgvsc: ENST00000487668.1:n.444G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000395738
  ensembl transcript: ENST00000439169
  gene symbol: TRMT2A
  hgvsc: ENST00000439169.2:c.1687G>A
  hgvsp: ENSP00000395738.2:p.Gly563Ser
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099899
  ensembl transcript: ENST00000480339
  gene symbol: TRMT2A
  hgvsc: ENST00000480339.1:n.255G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000397744
  ensembl transcript: ENST00000444845
  gene symbol: TRMT2A
  hgvsc: ENST00000444845.1:c.245+32G>A
  variant of: http://identifiers.org/hgnc/24974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099899
  ensembl protein: ENSP00000384968
  ensembl transcript: ENST00000404751
  gene symbol: TRMT2A
  hgvsc: ENST00000404751.3:c.1633G>A
  hgvsp: ENSP00000384968.3:p.Gly545Ser
  variant of: http://identifiers.org/hgnc/24974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly545Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7701
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.527e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 6.42e0

VQSLOD
type: SiteQuality
SIO_000300: -3.138e0

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.528e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.666e0

MQ
type: SiteQuality
SIO_000300: 5.853e1

DP
type: SiteQuality
SIO_000300: 1.579805e6

GenotypeQuality
all individuals: 37757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.578643e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.237e0

VQSLOD
type: SiteQuality
SIO_000300: -5.959e-1

FS
type: SiteQuality
SIO_000300: 8.268000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.571e0

GenotypeQuality
all individuals: 3374
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3693
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 7687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.05587064076264e-4
allele num: 66296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 1.577895e6

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

FS
type: SiteQuality
SIO_000300: 5.43e-1

QD
type: SiteQuality
SIO_000300: 1.182e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.877e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7605
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.267e1

DP
type: SiteQuality
SIO_000300: 1.572024e6

MQRankSum
type: SiteQuality
SIO_000300: 2.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.649e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.03e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37121
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511030522816561e-5
allele num: 66180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.05e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.571592e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

FS
type: SiteQuality
SIO_000300: 2.322e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 2266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37149
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.720923904828128e-4
allele num: 66154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597402597402597e-4
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.193e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

FS
type: SiteQuality
SIO_000300: 1.163e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.571761e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

DP
type: SiteQuality
SIO_000300: 1.570346e6

VQSLOD
type: SiteQuality
SIO_000300: -5.088e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.08e1

GenotypeQuality
all individuals: 2954
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 2269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.875923906458257e-4
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

DP
type: SiteQuality
SIO_000300: 1.57026e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
all individuals: 37116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
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GenotypeQuality
all individuals: 923
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423361201987156e-4
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024986387561256e-5
allele num: 66116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.274e1

DP
type: SiteQuality
SIO_000300: 1.57026e6

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1004
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variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.581e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 1.567706e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.313e1

VQSLOD
type: SiteQuality
SIO_000300: -1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2948
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variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029017992366875e-5
allele num: 66028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.631e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.85e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.59e-1

DP
type: SiteQuality
SIO_000300: 1.565441e6

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36743
bin: 6.25e1
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GenotypeQuality
all individuals: 3684
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-5
allele num: 65980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.745e0

DP
type: SiteQuality
SIO_000300: 1.563052e6

QD
type: SiteQuality
SIO_000300: 1.037e1

MQ
type: SiteQuality
SIO_000300: 5.905e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.566e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 2264
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 36591
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-5
allele num: 65920
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.243e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.288e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.560571e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.034993474764029e-5
allele num: 65898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.972194637537239e-4
allele num: 10070
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.559696e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.559e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

FS
type: SiteQuality
SIO_000300: 5.796e0

QD
type: SiteQuality
SIO_000300: 1.038e1

GenotypeQuality
all individuals: 2259
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 259
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 3689
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variant carriers: 2

GenotypeQuality
all individuals: 3347
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.038590094196293e-5
allele num: 65820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.557042e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.413e1

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

FS
type: SiteQuality
SIO_000300: 9.76e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.161e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.222e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 3345
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GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10000
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East Asian
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allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65800
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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SIO_000300: 5.17e-1

BaseQRankSum
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SIO_000300: -2.85e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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East Asian
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allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.520866285436184e-5
allele num: 65752
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.554007e6

FS
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.73e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65696
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.029201502483945e-4
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.398e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.65e-1

QD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.045901739209893e-5
allele num: 65662
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.551305e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.338e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.550621e6

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.31e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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SIO_000300: -5.5e-2

VQSLOD
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.102770657878677e-5
allele num: 65544
num of homozygotes: 0

Latino
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allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
type: Population
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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FS
type: SiteQuality
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MQRankSum
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

Latino
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African
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Other
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East Asian
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European (Finnish)
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South Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.066167903354387e-5
allele num: 65228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.24e-1

FS
type: SiteQuality
SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 1.536708e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.602e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.150075252633842e-4
allele num: 9302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.06e-1

DP
type: SiteQuality
SIO_000300: 1.523459e6

QD
type: SiteQuality
SIO_000300: 3.002e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.091e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64672
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.851e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

FS
type: SiteQuality
SIO_000300: 1.584e0

DP
type: SiteQuality
SIO_000300: 1.521602e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.321e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

QD
type: SiteQuality
SIO_000300: 5.42e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 997
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variant carriers: 0

GenotypeQuality
all individuals: 6871
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.205e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.374e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 2.026e0

VQSLOD
type: SiteQuality
SIO_000300: -1.497e0

DP
type: SiteQuality
SIO_000300: 1.518593e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.595e0

QD
type: SiteQuality
SIO_000300: 7.99e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 881
bin: 2.75e1
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 924
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GenotypeQuality
all individuals: 2857
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.659253277008138e-5
allele num: 64388
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.95e-1

FS
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.647e0

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

DP
type: SiteQuality
SIO_000300: 1.517438e6

QD
type: SiteQuality
SIO_000300: 1.416e1

GenotypeQuality
all individuals: 2321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 923
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.252e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.306e0

DP
type: SiteQuality
SIO_000300: 1.517211e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.019e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.763251870943701e-5
allele num: 64406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.083e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.895e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.774115305678213e-5
allele num: 64316
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.137e0

MQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQ
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554823061135643e-5
allele num: 64316
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.756e0

InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 1.520309e6

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

QD
type: SiteQuality
SIO_000300: 1.707e1

MQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

FS
type: SiteQuality
SIO_000300: 1.137e0

MQ
type: SiteQuality
SIO_000300: 6.115e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

GenotypeQuality
all individuals: 2873
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3730
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2266
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64164
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

DP
type: SiteQuality
SIO_000300: 1.520785e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQ
type: SiteQuality
SIO_000300: 6.022e1

QD
type: SiteQuality
SIO_000300: 1.859e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

GenotypeQuality
all individuals: 493
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.57013258897418e-3
allele num: 11464
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

MQ
type: SiteQuality
SIO_000300: 6.022e1

DP
type: SiteQuality
SIO_000300: 1.520785e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

QD
type: SiteQuality
SIO_000300: 1.859e1

GenotypeQuality
all individuals: 2401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557001837262168e-5
allele num: 64226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

DP
type: SiteQuality
SIO_000300: 1.519288e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.782e0

FS
type: SiteQuality
SIO_000300: 4.776e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.05e1

VQSLOD
type: SiteQuality
SIO_000300: -5.83e-2

QD
type: SiteQuality
SIO_000300: 1.244e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

GenotypeQuality
all individuals: 456
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
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variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 406
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555306706482518e-5
allele num: 64296
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

DP
type: SiteQuality
SIO_000300: 1.519337e6

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

FS
type: SiteQuality
SIO_000300: 1.795e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3370
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variant carriers: 0

GenotypeQuality
all individuals: 541
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variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
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variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31198
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64256
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.518116e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.427e0

VQSLOD
type: SiteQuality
SIO_000300: 4.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3777
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 842
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2934
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30690
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6901
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3348
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.036191401505951e-4
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.2071992976295e-3
allele num: 9112
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.568764162454244e-3
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.558797855094152e-4
allele num: 64152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.519465e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

QD
type: SiteQuality
SIO_000300: 1.436e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
all individuals: 636
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
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GenotypeQuality
all individuals: 3356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
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variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 2.25e1
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GenotypeQuality
all individuals: 6877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.493298176225005e-4
allele num: 9102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.745810055865922e-4
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.124707058713245e-5
allele num: 64006
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 3.208e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

QD
type: SiteQuality
SIO_000300: 1.281e1

DP
type: SiteQuality
SIO_000300: 1.521606e6

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558457750210392e-5
allele num: 64166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 1.524741e6

FS
type: SiteQuality
SIO_000300: 1.088e0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.597e1

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
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variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 3.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.525785779676533e-4
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.56162158785683e-5
allele num: 64036
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 6.870000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.525615e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.416e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 2.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.754e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64190
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.5e-3

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
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SIO_000300: -9.340000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.094e0

MQRankSum
type: SiteQuality
SIO_000300: -1.077e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.678435531158381e-5
allele num: 64124
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.583e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

DP
type: SiteQuality
SIO_000300: 1.530719e6

QD
type: SiteQuality
SIO_000300: 1.394e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.727526618956188e-5
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

FS
type: SiteQuality
SIO_000300: 6.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.13e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

DP
type: SiteQuality
SIO_000300: 1.532158e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 6.14e-1

DP
type: SiteQuality
SIO_000300: 1.532158e6

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64156
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.672606068157747e-5
allele num: 64204
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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East Asian
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allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.55671098103926e-5
allele num: 64238
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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MQRankSum
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 2.712e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 1.185395922238028e-4
allele num: 8436
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

GenotypeQuality
all individuals: 3862
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 615
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3207
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.673479561316052e-5
allele num: 64192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

DP
type: SiteQuality
SIO_000300: 1.538568e6

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.328e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.01e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

GenotypeQuality
all individuals: 248
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7364
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.262997607135088e-4
allele num: 9194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 52
allele frequency: 8.093385214007782e-4
allele num: 64250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.615974886641088e-4
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 1.54515e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.806e0

FS
type: SiteQuality
SIO_000300: 1.302e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.37e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

GenotypeQuality
all individuals: 7384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3698
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2478
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3942
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.528835690968443e-4
allele num: 9190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.765e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.547134e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

GenotypeQuality
all individuals: 1223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7587
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55265037418874e-5
allele num: 64406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.45e-1

DP
type: SiteQuality
SIO_000300: 1.561127e6

QD
type: SiteQuality
SIO_000300: 1.118e1

FS
type: SiteQuality
SIO_000300: 3.411e0

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 333
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2579
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 31549
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 7510
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 482
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3312
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 514
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3757
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.272727272727273e-3
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 1223
allele frequency: 1.284394034866625e-1
allele num: 9522
num of homozygotes: 65

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 73
allele frequency: 6.357777390698484e-3
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 5.725781491798205e-4
allele num: 64620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.42e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.45e1

VQSLOD
type: SiteQuality
SIO_000300: 5.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 1.597138e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.773e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 255
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.046462955211386e-4
allele num: 9556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64734
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.76e1

DP
type: SiteQuality
SIO_000300: 1.603082e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.044e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.04e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.868e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 375
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4844
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 1716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3434
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.031405359524675e-4
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.076449776957391e-4
allele num: 65010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

QD
type: SiteQuality
SIO_000300: 4.34e0

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

FS
type: SiteQuality
SIO_000300: 4.209e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

DP
type: SiteQuality
SIO_000300: 1.613149e6

MQ
type: SiteQuality
SIO_000300: 5.172e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 370
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.332633543270352e-4
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.005e0

DP
type: SiteQuality
SIO_000300: 1.612363e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3975
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7831
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2750
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532379171902295e-5
allele num: 65258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.045e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.526e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 1.623205e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.126e0

GenotypeQuality
all individuals: 5651
bin: 6.75e1
variant carriers: 24

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1036
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2841
bin: 7.75e1
variant carriers: 25

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23785
bin: 6.25e1
variant carriers: 19

GenotypeQuality
all individuals: 2450
bin: 7.25e1
variant carriers: 15

GenotypeQuality
all individuals: 951
bin: 9.25e1
variant carriers: 34

GenotypeQuality
all individuals: 927
bin: 8.75e1
variant carriers: 21

GenotypeQuality
all individuals: 1978
bin: 8.25e1
variant carriers: 29

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 20080
bin: 9.75e1
variant carriers: 16467

Latino
type: Population
allele count: 1022
allele frequency: 8.869987849331713e-2
allele num: 11522
num of homozygotes: 63

European (Finnish)
type: Population
allele count: 928
allele frequency: 1.40393343419062e-1
allele num: 6610
num of homozygotes: 60

European (Non-Finnish)
type: Population
allele count: 12976
allele frequency: 1.978471015155673e-1
allele num: 65586
num of homozygotes: 1280

South Asian
type: Population
allele count: 2981
allele frequency: 1.807543051176328e-1
allele num: 16492
num of homozygotes: 287

Other
type: Population
allele count: 154
allele frequency: 1.707317073170732e-1
allele num: 902
num of homozygotes: 14

East Asian
type: Population
allele count: 16
allele frequency: 1.861330851558865e-3
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 318
allele frequency: 3.246222948142099e-2
allele num: 9796
num of homozygotes: 7

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.71e-2

QD
type: SiteQuality
SIO_000300: 1.617e1

DP
type: SiteQuality
SIO_000300: 2.296351e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.128e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 1.374e0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.978e0

FS
type: SiteQuality
SIO_000300: 1.243e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 2.269244e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 3.297e1

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17451
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 24919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.428e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.163e0

VQSLOD
type: SiteQuality
SIO_000300: -1.294e0

MQ
type: SiteQuality
SIO_000300: 6.153e1

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

QD
type: SiteQuality
SIO_000300: 3.328e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 2.270686e6

GenotypeQuality
all individuals: 672
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17451
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515243348081702e-5
allele num: 65996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.689e0

FS
type: SiteQuality
SIO_000300: 4.152e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.18e-1

DP
type: SiteQuality
SIO_000300: 2.272136e6

QD
type: SiteQuality
SIO_000300: 1.068e1

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25012
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17451
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6122
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515243348081702e-5
allele num: 65996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.152e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

DP
type: SiteQuality
SIO_000300: 2.272136e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.689e0

QD
type: SiteQuality
SIO_000300: 1.068e1

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17461
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25232
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66112
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.181e0

DP
type: SiteQuality
SIO_000300: 2.275897e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

FS
type: SiteQuality
SIO_000300: 1.567e0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.729e1

GenotypeQuality
all individuals: 6184
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17461
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.239e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.734e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

DP
type: SiteQuality
SIO_000300: 2.276181e6

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17465
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.797773654916512e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66164
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.912e1

QD
type: SiteQuality
SIO_000300: 1.235e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.277557e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17465
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 479
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511395925276585e-5
allele num: 66164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

DP
type: SiteQuality
SIO_000300: 2.277557e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

GenotypeQuality
all individuals: 17470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25366
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66228
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.718e0

VQSLOD
type: SiteQuality
SIO_000300: -1.301e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.279112e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.553e0

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.307e0

VQSLOD
type: SiteQuality
SIO_000300: -3.109e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.142e0

QD
type: SiteQuality
SIO_000300: 5.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e0

MQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

DP
type: SiteQuality
SIO_000300: 2.281408e6