X-53247422-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247422
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247422
    reference: chr 0
allele count: 3
allele frequency: 3.513250810975395e-5
allele num: 85391
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.332+36A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.351+36A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*232+36A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.351+36A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.351+36A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-274A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.462+36A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-274A>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-53247428-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247428
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247427
    reference: chr 0
allele count: 1
allele frequency: 1.169057389027227e-5
allele num: 85539
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.462+29delT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.351+29delT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.351+29delT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-281delT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.351+29delT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-281delT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.332+29delT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*232+29delT
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: GA
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-53247435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247435
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247435
    reference: chr 0
allele count: 2
allele frequency: 2.333912921708891e-5
allele num: 85693
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.351+23C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-287C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.351+23C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*232+23C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.462+23C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-287C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.351+23C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.332+23C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2503
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-53247440-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247440
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247440
    reference: chr 0
allele count: 1
allele frequency: 1.164998776751284e-5
allele num: 85837
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-292T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-292T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.351+18T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.462+18T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.332+18T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.351+18T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.351+18T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*232+18T>C
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16140
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

X-53247487-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247487
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247487
    reference: chr 0
allele count: 1
allele frequency: 1.150536149845828e-5
allele num: 86916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.322C>T
  hgvsp: ENSP00000364528.3:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.303C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-339C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.433C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.322C>T
  hgvsp: ENSP00000364550.3:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*203C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.322C>T
  hgvsp: ENSP00000385394.3:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-339C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg108Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-53247490-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247490
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247490
    reference: chr 0
allele count: 1
allele frequency: 1.149530991355527e-5
allele num: 86992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*200C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.300C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-342C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.319C>T
  hgvsp: ENSP00000364528.3:p.Arg107Trp
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.430C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-342C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.319C>T
  hgvsp: ENSP00000364550.3:p.Arg107Trp
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.319C>T
  hgvsp: ENSP00000385394.3:p.Arg107Trp
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg107Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-53247510-AAGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247510
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247507
    reference: chr 0
allele count: 1
allele frequency: 1.146131805157593e-5
allele num: 87250
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.296_298delCCT
  hgvsp: ENSP00000364550.3:p.Ser99del
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-365_151-363delCCT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-365_229-363delCCT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*177_*179delCCT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.296_298delCCT
  hgvsp: ENSP00000364528.3:p.Ser99del
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*145_*147delCCT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.296_298delCCT
  hgvsp: ENSP00000385394.3:p.Ser99del
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.407_409delCCT
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.277_279delCCT
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6054
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser99del
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: AAGG
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-53247517-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247517
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247517
    reference: chr 0
allele count: 1
allele frequency: 1.145672223176949e-5
allele num: 87285
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-369T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-369T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.292T>G
  hgvsp: ENSP00000364528.3:p.Ser98Ala
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*141T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*173T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.403T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.273T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.292T>G
  hgvsp: ENSP00000364550.3:p.Ser98Ala
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.292T>G
  hgvsp: ENSP00000385394.3:p.Ser98Ala
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser98Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-53247548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247548
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247548
    reference: chr 0
allele count: 1
allele frequency: 1.142987770030861e-5
allele num: 87490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*142C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.372C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*110C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.242C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-400C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.261C>T
  hgvsp: ENST00000404049.3:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.261C>T
  hgvsp: ENST00000375401.3:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.261C>T
  hgvsp: ENST00000375379.3:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-400C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp87Asp
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-53247572-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247572
    reference: chr 0
allele count: 1
allele frequency: 1.143000834390609e-5
allele num: 87489
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*86G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.348G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.237G>C
  hgvsp: ENST00000404049.3:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*118G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-424G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.218G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.237G>C
  hgvsp: ENST00000375401.3:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-424G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.237G>C
  hgvsp: ENST00000375379.3:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22814
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6198
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr79Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

X-53247572-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247572
    reference: chr 0
allele count: 2
allele frequency: 2.286001668781218e-5
allele num: 87489
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.237G>A
  hgvsp: ENST00000404049.3:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*86G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.237G>A
  hgvsp: ENST00000375379.3:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.348G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.237G>A
  hgvsp: ENST00000375401.3:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-424G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-424G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*118G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.218G>A
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr79Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-53247586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247586
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247586
    reference: chr 0
allele count: 1
allele frequency: 1.143236043945994e-5
allele num: 87471
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.334C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-6C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*78-6C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-438C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-6C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-6C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-6C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-438C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-6C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22706
  bin: 6.25e1
  variant carriers: 0
hgvs: c.229-6C>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-53247593-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247593
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247593
    reference: chr 0
allele count: 1
allele frequency: 1.143301397114307e-5
allele num: 87466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-13A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.327A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-13A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-13A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-445A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-13A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-13A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-445A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*78-13A>G
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

X-53247623-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247623
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247623
    reference: chr 0
allele count: 3
allele frequency: 3.435442313197824e-5
allele num: 87325
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-475G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*78-43G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-43G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-43G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-43G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.297G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-43G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-475G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-43G>C
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

X-53247625-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247625
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247625
    reference: chr 0
allele count: 1
allele frequency: 1.145659097678895e-5
allele num: 87286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-477C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*78-45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.295C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-477C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-45C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-53247632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247632
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247632
    reference: chr 0
allele count: 1
allele frequency: 1.146144941489301e-5
allele num: 87249
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*78-52T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-52T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-52T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.288T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-52T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-484T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-52T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-52T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-484T>C
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15230
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16162
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

X-53247789-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247789
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247789
    reference: chr 0
allele count: 2
allele frequency: 4.006410256410256e-4
allele num: 4992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*34C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-209C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-641C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-209C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.131C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-641C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-209C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-209C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-209C>G
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18665
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16809
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-53247796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247796
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247796
    reference: chr 0
allele count: 104
allele frequency: 2.1899347230996e-2
allele num: 4749
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-216G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-216G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-216G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-216G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-216G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.124G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-648G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*27G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-648G>A
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16089
  bin: 2.5e0
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 7.5e0
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 1.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14260
  bin: 7.5e0
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 1.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
num of homozygotes: 7
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-53247803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247803
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4709
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-655C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-223C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.117C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-223C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-223C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-655C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-223C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-223C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum

X-53247805-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247805
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247805
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4673
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-657A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*18A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-225A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-225A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.115A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-225A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-225A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-657A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-225A>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13115
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3399
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

X-53247810-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247810
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247810
    reference: chr 0
allele count: 1
allele frequency: 2.145922746781116e-4
allele num: 4660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-662A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-230A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-230A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-230A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-230A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-662A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.110A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*13A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-230A>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-53247819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247819
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247819
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4588
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-239C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-239C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-239C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-239C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-671C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-239C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.101C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-671C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8796
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

X-53247826-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247826
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247826
    reference: chr 0
allele count: 1
allele frequency: 2.193463478833078e-4
allele num: 4559
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.297G>A
  hgvsp: ENST00000428012.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-678G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-246G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-246G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-678G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-246G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-246G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.94G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-246G>A
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro99Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

X-53247827-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247827
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-247C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.93C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-247C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-247C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-247C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.296C>T
  hgvsp: ENSP00000407277.1:p.Pro99Leu
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-679C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-679C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-247C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro99Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-53247833-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247833
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247833
    reference: chr 0
allele count: 1
allele frequency: 2.170609941393532e-4
allele num: 4607
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-253G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-253G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.87G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.290G>T
  hgvsp: ENSP00000407277.1:p.Ser97Ile
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-685G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-253G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-253G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-253G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-685G>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7388
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser97Ile
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

X-53247851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247851
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247851
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-271C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.272C>T
  hgvsp: ENSP00000407277.1:p.Pro91Leu
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-271C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-703C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-271C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-271C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.69C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-703C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-271C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro91Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ

X-53247858-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247858
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247858
    reference: chr 0
allele count: 1
allele frequency: 2.2002200220022e-4
allele num: 4545
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-278T>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-278T>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.265T>A
  hgvsp: ENSP00000407277.1:p.Leu89Met
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.62T>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-278T>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-278T>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-710T>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-710T>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-278T>A
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu89Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

X-53247896-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247896
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247896
    reference: chr 0
allele count: 2
allele frequency: 5.572582892170521e-4
allele num: 3589
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-748A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-316A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-748A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-316A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.24A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-316A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.229-2A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-316A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-316A>G
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: c.229-2A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-53247907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247907
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247907
    reference: chr 0
allele count: 1
allele frequency: 3.508771929824561e-4
allele num: 2850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.13C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-327C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-759C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-327C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.229-13C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-759C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-327C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-327C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-327C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-53247914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247914
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247914
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-334G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-766G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-334G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000495519
  gene symbol: KDM5C
  hgvsc: ENST00000495519.1:n.6G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.229-20G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-334G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-334G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-334G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-766G>A
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

X-53247924-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053247924
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053247924
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1365
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.229-776T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.229-344T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.229-344T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*110-344T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.229-30T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-776T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.210-344T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.229-344T>C
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-53249976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053249976
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053249976
    reference: chr 0
allele count: 1
allele frequency: 1.842536804672673e-5
allele num: 54273
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*109+45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.228+45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.209+45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.228+45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.228+45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.228+45C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2828C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.228+45C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
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genotype quality: GenotypeQuality
  all individuals: 5533
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5456
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS

X-53249988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053249988
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053249988
    reference: chr 0
allele count: 1
allele frequency: 1.789324887719863e-5
allele num: 55887
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.228+33G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*109+33G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.228+33G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.209+33G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.228+33G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.228+33G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.228+33G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2840G>A
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20658
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11597
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7468
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3875
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-53250001-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250001
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250001
    reference: chr 0
allele count: 1
allele frequency: 1.627710137378736e-5
allele num: 61436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.228+20G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2853G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.228+20G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.228+20G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.228+20G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*109+20G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.209+20G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.228+20G>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14600
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

X-53250004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250004
    reference: chr 0
allele count: 1
allele frequency: 1.582128278960858e-5
allele num: 63206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.228+17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.228+17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2856C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.228+17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.228+17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.209+17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*109+17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.228+17C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-53250009-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250009
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250009
    reference: chr 0
allele count: 1
allele frequency: 1.516714190377965e-5
allele num: 65932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.228+12A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.228+12A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.228+12A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.228+12A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.209+12A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*109+12A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2861A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.228+12A>G
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-53250014-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250014
    reference: chr 0
allele count: 2
allele frequency: 2.921499313447661e-5
allele num: 68458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.228+7A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.209+7A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.228+7A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.228+7A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2866A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.228+7A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*109+7A>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.228+7A>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
hgvs: c.228+7A>T
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-53250014-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250014
    reference: chr 0
allele count: 2
allele frequency: 2.921499313447661e-5
allele num: 68458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.228+7A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2866A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.228+7A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*109+7A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.228+7A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.228+7A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.209+7A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.228+7A>G
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
hgvs: c.228+7A>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

X-53250020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250020
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250020
    reference: chr 0
allele count: 1
allele frequency: 1.397878021163873e-5
allele num: 71537
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.228+1G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.228+1G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.209+1G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.228+1G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2872G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*109+1G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.228+1G>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.228+1G>A
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6993
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
hgvs: c.228+1G>A
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-53250024-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250024
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250024
    reference: chr 0
allele count: 1
allele frequency: 1.35867719188598e-5
allele num: 73601
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.225A>G
  hgvsp: ENST00000375401.3:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.225A>G
  hgvsp: ENST00000375379.3:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.225A>G
  hgvsp: ENST00000428012.1:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.225A>G
  hgvsp: ENST00000404049.3:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.225A>G
  hgvsp: ENST00000375383.3:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2876A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*106A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.206A>G
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu75Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-53250038-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250038
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250038
    reference: chr 0
allele count: 2
allele frequency: 2.494761001896018e-5
allele num: 80168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.211A>C
  hgvsp: ENST00000404049.3:c.211A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2890A>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.192A>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.211A>C
  hgvsp: ENST00000375383.3:c.211A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.211A>C
  hgvsp: ENST00000375379.3:c.211A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.211A>C
  hgvsp: ENST00000375401.3:c.211A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.211A>C
  hgvsp: ENST00000428012.1:c.211A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*92A>C
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg71Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-53250046-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250046
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250047
    reference: chr 0
allele count: 1
allele frequency: 1.213047539333066e-5
allele num: 82437
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2899dupC
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.202dupC
  hgvsp: ENSP00000385394.3:p.Arg68ProfsTer7
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.202dupC
  hgvsp: ENSP00000364528.3:p.Arg68ProfsTer7
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*83dupC
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.202dupC
  hgvsp: ENSP00000364550.3:p.Arg68ProfsTer7
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.202dupC
  hgvsp: ENSP00000364532.3:p.Arg68ProfsTer7
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.202dupC
  hgvsp: ENSP00000407277.1:p.Arg68ProfsTer7
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.183dupC
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg68ProfsTer7
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

X-53250052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250052
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250052
    reference: chr 0
allele count: 1
allele frequency: 1.186408504176158e-5
allele num: 84288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.197C>T
  hgvsp: ENSP00000385394.3:p.Thr66Ile
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.197C>T
  hgvsp: ENSP00000364532.3:p.Thr66Ile
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.197C>T
  hgvsp: ENSP00000364528.3:p.Thr66Ile
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.178C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.197C>T
  hgvsp: ENSP00000364550.3:p.Thr66Ile
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.197C>T
  hgvsp: ENSP00000407277.1:p.Thr66Ile
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2904C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5392
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr66Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-53250066-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250066
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250066
    reference: chr 0
allele count: 2
allele frequency: 2.329699002888827e-5
allele num: 85848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.183C>T
  hgvsp: ENST00000375379.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.183C>T
  hgvsp: ENST00000375383.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2918C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.183C>T
  hgvsp: ENST00000428012.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.183C>T
  hgvsp: ENST00000404049.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.164C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.183C>T
  hgvsp: ENST00000375401.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7214
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp61Asp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

X-53250105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250105
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250105
    reference: chr 0
allele count: 6
allele frequency: 6.898534061511928e-5
allele num: 86975
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.151-7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*32-7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.151-7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.151-7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.151-7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.132-7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.151-7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2957C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5901
  bin: 6.75e1
  variant carriers: 0
hgvs: c.151-7C>T
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

X-53250107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250107
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250107
    reference: chr 0
allele count: 2
allele frequency: 2.299114840786297e-5
allele num: 86990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.151-9C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.151-9C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*32-9C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.151-9C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.151-9C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.132-9C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.151-9C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2959C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-53250108-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250108
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250108
    reference: chr 0
allele count: 1
allele frequency: 1.149438499293095e-5
allele num: 86999
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.151-10A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.151-10A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.151-10A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.151-10A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.132-10A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*32-10A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.151-10A>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2960A>G
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-53250110-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250110
    reference: chr 0
allele count: 8
allele frequency: 9.194239808759812e-5
allele num: 87011
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.151-12C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*32-12C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.151-12C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.151-12C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.132-12C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2962C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.151-12C>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.151-12C>G
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36725
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7246
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-53250116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250116
    reference: chr 0
allele count: 1
allele frequency: 1.149266767802142e-5
allele num: 87012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.132-18C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.151-18C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.151-18C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.151-18C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.151-18C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*32-18C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.151-18C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2968C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36877
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-53250143-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250143
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250143
    reference: chr 0
allele count: 1
allele frequency: 1.150456731322335e-5
allele num: 86922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.*32-45T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.151-45T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.151-45T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.151-2995T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.151-45T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.151-45T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.151-45T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.132-45T>C
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7247
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

X-53250915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053250915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053250915
    reference: chr 0
allele count: 1
allele frequency: 1.019575856443719e-4
allele num: 9808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.151-817C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.211C>T
  hgvsp: ENSP00000344004.6:p.Gln71Ter
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126012
  ensembl transcript: ENST00000467093
  gene symbol: KDM5C
  hgvsc: ENST00000467093.1:n.86C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.151-817C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.150+3007C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.151-817C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.151-3C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.151-817C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.151-817C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln71Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-53253873-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053253873
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053253873
    reference: chr 0
allele count: 1
allele frequency: 1.231208677558759e-5
allele num: 81221
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.150+49T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.150+49T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.150+49T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.150+49T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.150+49T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.150+49T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.150+49T>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.150+49T>C
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14840
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24287
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-53253874-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053253874
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053253874
    reference: chr 0
allele count: 1
allele frequency: 1.231117731788691e-5
allele num: 81227
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.150+48G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.150+48G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.150+48G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.150+48G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.150+48G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.150+48G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.150+48G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.150+48G>C
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9881
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4373
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-53253899-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053253899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053253899
    reference: chr 0
allele count: 1
allele frequency: 1.218501730272457e-5
allele num: 82068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.150+23G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.150+23G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.150+23G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.150+23G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.150+23G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.150+23G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.150+23G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.150+23G>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-53253906-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053253906
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053253906
    reference: chr 0
allele count: 1
allele frequency: 1.209716442465886e-5
allele num: 82664
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.150+16G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.150+16G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.150+16G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.150+16G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.150+16G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.150+16G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.150+16G>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.150+16G>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

X-53253915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053253915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053253915
    reference: chr 0
allele count: 1
allele frequency: 1.199083899900476e-5
allele num: 83397
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.150+7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.150+7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.150+7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.150+7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.150+7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.150+7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.150+7C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.150+7C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19138
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
hgvs: c.150+7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-53253925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053253925
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053253925
    reference: chr 0
allele count: 1
allele frequency: 1.189824619851034e-5
allele num: 84046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.147C>T
  hgvsp: ENST00000375379.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.147C>T
  hgvsp: ENST00000375401.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.147C>T
  hgvsp: ENST00000349663.6:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.147C>T
  hgvsp: ENST00000452825.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.147C>T
  hgvsp: ENST00000429877.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.147C>T
  hgvsp: ENST00000404049.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.147C>T
  hgvsp: ENST00000428012.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.147C>T
  hgvsp: ENST00000375383.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro49Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

X-53253964-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053253964
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053253964
    reference: chr 0
allele count: 26
allele frequency: 3.082723704959628e-4
allele num: 84341
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.108C>T
  hgvsp: ENST00000429877.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.108C>T
  hgvsp: ENST00000375401.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.108C>T
  hgvsp: ENST00000428012.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.108C>T
  hgvsp: ENST00000404049.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.108C>T
  hgvsp: ENST00000375383.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.108C>T
  hgvsp: ENST00000349663.6:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.108C>T
  hgvsp: ENST00000375379.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.108C>T
  hgvsp: ENST00000452825.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20914
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29527
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro36Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

X-53254006-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254006
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254006
    reference: chr 0
allele count: 1
allele frequency: 1.29552138258042e-5
allele num: 77189
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.66C>G
  hgvsp: ENST00000375383.3:c.66C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.66C>G
  hgvsp: ENST00000404049.3:c.66C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.66C>G
  hgvsp: ENST00000375379.3:c.66C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.66C>G
  hgvsp: ENST00000349663.6:c.66C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.66C>G
  hgvsp: ENST00000429877.1:c.66C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.66C>G
  hgvsp: ENST00000428012.1:c.66C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.66C>G
  hgvsp: ENST00000452825.3:c.66C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.66C>G
  hgvsp: ENST00000375401.3:c.66C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30386
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala22Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-53254027-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254027
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254027
    reference: chr 0
allele count: 3
allele frequency: 4.169736055707674e-5
allele num: 71947
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.45G>A
  hgvsp: ENST00000428012.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.45G>A
  hgvsp: ENST00000375401.3:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.45G>A
  hgvsp: ENST00000349663.6:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.45G>A
  hgvsp: ENST00000375379.3:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.45G>A
  hgvsp: ENST00000404049.3:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.45G>A
  hgvsp: ENST00000452825.3:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.45G>A
  hgvsp: ENST00000429877.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.45G>A
  hgvsp: ENST00000375383.3:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15211
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro15Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-53254045-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254045
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254045
    reference: chr 0
allele count: 4
allele frequency: 5.978715771852206e-5
allele num: 66904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.27A>G
  hgvsp: ENST00000349663.6:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.27A>G
  hgvsp: ENST00000428012.1:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.27A>G
  hgvsp: ENST00000404049.3:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.27A>G
  hgvsp: ENST00000375379.3:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.27A>G
  hgvsp: ENST00000375383.3:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.27A>G
  hgvsp: ENST00000375401.3:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.27A>G
  hgvsp: ENST00000429877.1:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.27A>G
  hgvsp: ENST00000452825.3:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12065
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu9Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-53254047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254047
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254047
    reference: chr 0
allele count: 2
allele frequency: 3.050594103201599e-5
allele num: 65561
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.25C>T
  hgvsp: ENST00000429877.1:c.25C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.25C>T
  hgvsp: ENST00000452825.3:c.25C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.25C>T
  hgvsp: ENST00000404049.3:c.25C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.25C>T
  hgvsp: ENST00000428012.1:c.25C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.25C>T
  hgvsp: ENST00000349663.6:c.25C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.25C>T
  hgvsp: ENST00000375383.3:c.25C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.25C>T
  hgvsp: ENST00000375379.3:c.25C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.25C>T
  hgvsp: ENST00000375401.3:c.25C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16715
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13561
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu9Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-53254056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254056
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254056
    reference: chr 0
allele count: 1
allele frequency: 1.593676292471473e-5
allele num: 62748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.16G>A
  hgvsp: ENSP00000364528.3:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.16G>A
  hgvsp: ENSP00000445176.1:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.16G>A
  hgvsp: ENSP00000364532.3:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.16G>A
  hgvsp: ENSP00000344004.6:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.16G>A
  hgvsp: ENSP00000407277.1:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.16G>A
  hgvsp: ENSP00000364550.3:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.16G>A
  hgvsp: ENSP00000385394.3:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.16G>A
  hgvsp: ENSP00000409757.1:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16772
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp6Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-53254057-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254057
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254057
    reference: chr 0
allele count: 1
allele frequency: 1.59558342507938e-5
allele num: 62673
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.15C>T
  hgvsp: ENST00000349663.6:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.15C>T
  hgvsp: ENST00000375401.3:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.15C>T
  hgvsp: ENST00000404049.3:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.15C>T
  hgvsp: ENST00000428012.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.15C>T
  hgvsp: ENST00000375383.3:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.15C>T
  hgvsp: ENST00000429877.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.15C>T
  hgvsp: ENST00000375379.3:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.15C>T
  hgvsp: ENST00000452825.3:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17419
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser5Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

X-53254063-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254063
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254063
    reference: chr 0
allele count: 1
allele frequency: 1.64766361299677e-5
allele num: 60692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.9G>C
  hgvsp: ENST00000375379.3:c.9G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.9G>C
  hgvsp: ENST00000375383.3:c.9G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.9G>C
  hgvsp: ENST00000429877.1:c.9G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.9G>C
  hgvsp: ENST00000452825.3:c.9G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.9G>C
  hgvsp: ENST00000404049.3:c.9G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.9G>C
  hgvsp: ENST00000428012.1:c.9G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.9G>C
  hgvsp: ENST00000375401.3:c.9G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.9G>C
  hgvsp: ENST00000349663.6:c.9G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro3Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

X-53254066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254066
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254066
    reference: chr 0
allele count: 2
allele frequency: 3.355254328278084e-5
allele num: 59608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.6G>A
  hgvsp: ENST00000349663.6:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.6G>A
  hgvsp: ENST00000375401.3:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.6G>A
  hgvsp: ENST00000375379.3:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.6G>A
  hgvsp: ENST00000452825.3:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.6G>A
  hgvsp: ENST00000375383.3:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.6G>A
  hgvsp: ENST00000428012.1:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.6G>A
  hgvsp: ENST00000429877.1:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.6G>A
  hgvsp: ENST00000404049.3:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3946
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu2Glu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

X-53254088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254088
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254088
    reference: chr 0
allele count: 1
allele frequency: 1.924557351809084e-5
allele num: 51960
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.-17C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18798
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8361
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

X-53254102-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254102
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254102
    reference: chr 0
allele count: 1
allele frequency: 2.195582488034076e-5
allele num: 45546
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.-31C>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.-31C>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.-31C>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.-31C>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.-31C>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.-31C>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.-31C>A
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.-31C>A
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3799
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-53254106-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254106
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254106
    reference: chr 0
allele count: 4
allele frequency: 9.354318187133136e-5
allele num: 42761
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.-35G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.-35G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.-35G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.-35G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.-35G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.-35G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.-35G>C
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.-35G>C
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16859
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21574
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3719
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

X-53254111-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254111
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254111
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 39478
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.-40T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.-40T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.-40T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.-40T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.-40T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.-40T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.-40T>G
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.-40T>G
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23022
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4758
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19115
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

X-53254114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24053254114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24053254114
    reference: chr 0
allele count: 1
allele frequency: 2.594504838751524e-5
allele num: 38543
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364550
  ensembl transcript: ENST00000375401
  gene symbol: KDM5C
  hgvsc: ENST00000375401.3:c.-43C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000407277
  ensembl transcript: ENST00000428012
  gene symbol: KDM5C
  hgvsc: ENST00000428012.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364532
  ensembl transcript: ENST00000375383
  gene symbol: KDM5C
  hgvsc: ENST00000375383.3:c.-43C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000409757
  ensembl transcript: ENST00000429877
  gene symbol: KDM5C
  hgvsc: ENST00000429877.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000364528
  ensembl transcript: ENST00000375379
  gene symbol: KDM5C
  hgvsc: ENST00000375379.3:c.-43C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000385394
  ensembl transcript: ENST00000404049
  gene symbol: KDM5C
  hgvsc: ENST00000404049.3:c.-43C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000344004
  ensembl transcript: ENST00000349663
  gene symbol: KDM5C
  hgvsc: ENST00000349663.6:c.-43C>T
  variant of: http://identifiers.org/hgnc/11114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126012
  ensembl protein: ENSP00000445176
  ensembl transcript: ENST00000452825
  gene symbol: KDM5C
  hgvsc: ENST00000452825.3:c.-43C>T
  variant of: http://identifiers.org/hgnc/11114
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16112
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2628
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4692
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6489
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9703
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9119
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.405602767220395e-5
allele num: 46834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4336
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.501e1

DP
type: SiteQuality
SIO_000300: 1.869502e6

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 4.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.676e0

GenotypeQuality
all individuals: 1507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16128
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4339
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46912
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.027643613194944e-4
allele num: 9731
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9127
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.153e1

QD
type: SiteQuality
SIO_000300: 3.078e1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

DP
type: SiteQuality
SIO_000300: 1.888129e6

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16136
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9733
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46999
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9143
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8335
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.072196620583717e-4
allele num: 6510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 8.37e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.421e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

DP
type: SiteQuality
SIO_000300: 1.907871e6

QD
type: SiteQuality
SIO_000300: 1.043e1

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8345
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.125037188150793e-5
allele num: 47058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9761
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9163
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.49e-1

QD
type: SiteQuality
SIO_000300: 1.599e1

VQSLOD
type: SiteQuality
SIO_000300: -1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.525e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.92118e6

MQRankSum
type: SiteQuality
SIO_000300: -1.575e0

GenotypeQuality
all individuals: 661
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16160
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4477
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9237
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9949
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.100663809763885e-5
allele num: 47604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8441
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.744e0

VQSLOD
type: SiteQuality
SIO_000300: -2.509e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

DP
type: SiteQuality
SIO_000300: 1.987216e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

QD
type: SiteQuality
SIO_000300: 3.18e1

GenotypeQuality
all individuals: 407
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16159
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 578
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2824
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3387
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6585
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09885612341274e-5
allele num: 47645
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4483
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8447
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

DP
type: SiteQuality
SIO_000300: 1.991918e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.41e-1

QD
type: SiteQuality
SIO_000300: 1.496e1

FS
type: SiteQuality
SIO_000300: 4.129e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
all individuals: 2349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.078865033984249e-4
allele num: 9269
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

MQ
type: SiteQuality
SIO_000300: 5.809e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.29e1

DP
type: SiteQuality
SIO_000300: 2.003534e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.923e0

GenotypeQuality
all individuals: 355
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9269
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47779
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.180498170227836e-4
allele num: 8471
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

FS
type: SiteQuality
SIO_000300: 4.123e0

VQSLOD
type: SiteQuality
SIO_000300: -2.348e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 2.005543e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 3.96e0

GenotypeQuality
all individuals: 3483
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.076658053402239e-4
allele num: 9288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47880
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 2.016366e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

FS
type: SiteQuality
SIO_000300: 2.232e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.294e0

QD
type: SiteQuality
SIO_000300: 1.288e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089078298654634e-5
allele num: 47868
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8481
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10073
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.477e-1

ClippingRankSum
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SIO_000300: -9.05e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.399e1

DP
type: SiteQuality
SIO_000300: 2.016175e6

FS
type: SiteQuality
SIO_000300: 2.435e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: -4.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.178156597309267e-5
allele num: 47868
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10073
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8481
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.36e-2

FS
type: SiteQuality
SIO_000300: 2.435e0

DP
type: SiteQuality
SIO_000300: 2.016175e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.477e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.51e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089471154850707e-5
allele num: 47859
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10071
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.01266e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.04e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: -2.989e0

MQRankSum
type: SiteQuality
SIO_000300: -1.602e0

QD
type: SiteQuality
SIO_000300: 2.614e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.386e0

MQ
type: SiteQuality
SIO_000300: 5.892e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089558476293959e-5
allele num: 47857
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.066e0

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.343e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 8.351000000000001e0

QD
type: SiteQuality
SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 2.007747e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 2.984480700358138e-4
allele num: 10052
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8451
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.187e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.38e-1

FS
type: SiteQuality
SIO_000300: 3.364e0

DP
type: SiteQuality
SIO_000300: 1.971862e6

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.35e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.508978421608571e-4
allele num: 6627
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4507
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47766
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.86e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.25e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 2.094328558264221e-5
allele num: 47748
num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 625
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

MQ
type: SiteQuality
SIO_000300: 5.824e1

VQSLOD
type: SiteQuality
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FS
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.971028e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14
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South Asian
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allele frequency: 0.0e0
allele num: 2163
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 1.333333333333333e-2
allele num: 150
num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
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variant carriers: 10

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 5

European (Non-Finnish)
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allele count: 7
allele frequency: 3.573251659009699e-3
allele num: 1959
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 2.5e-2
allele num: 80
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 4.623208506703652e-4
allele num: 2163
num of homozygotes: 0

African
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allele count: 93
allele frequency: 2.695652173913043e-1
allele num: 345
num of homozygotes: 7

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 141
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.818181818181818e-2
allele num: 55
num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 3.58e-1

InbreedingCoeff
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SIO_000300: -3.45e-2

BaseQRankSum
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SIO_000300: 1.23e0

DP
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SIO_000300: 1.1331e5

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

ClippingRankSum
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SIO_000300: 2.25e-1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.751e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 137
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 275
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2277
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

BaseQRankSum
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SIO_000300: -1.035e0

ClippingRankSum
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SIO_000300: -5.0e-1

VQSLOD
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DP
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SIO_000300: 1.07906e5

MQ
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InbreedingCoeff
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SIO_000300: -8.09e-2

FS
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1857
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 126
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -7.96e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.046e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.21e1

DP
type: SiteQuality
SIO_000300: 1.04693e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 243
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 2325
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.44069640914037e-4
allele num: 1838
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.05337e5

InbreedingCoeff
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SIO_000300: -7.91e-2

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -9.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.84e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.836e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.775e0

QD
type: SiteQuality
SIO_000300: 7.89e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 219
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.62e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.696e1

DP
type: SiteQuality
SIO_000300: 1.00831e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1694
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 4.11522633744856e-4
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Other
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 2475
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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QD
type: SiteQuality
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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African
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InbreedingCoeff
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SIO_000300: -6.41e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

FS
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SIO_000300: 0.0e0

QD
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ReadPosRankSum
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SIO_000300: -1.032e0

VQSLOD
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SIO_000300: -2.089e0

DP
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SIO_000300: 9.6976e4

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

MQ
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SIO_000300: 5.725e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 53
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 121
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.281407035175879e-4
allele num: 1592
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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DP
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SIO_000300: 9.4807e4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 103
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1264
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 9.92063492063492e-4
allele num: 2016
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -6.0e-2

ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 3.074e0

MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.843e1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 1044
num of homozygotes: 0

East Asian
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allele frequency: 1.052631578947368e-2
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1531
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 117
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.139e0

InbreedingCoeff
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SIO_000300: -6.469999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.74e0

DP
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SIO_000300: 5.467e4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.984e0

QD
type: SiteQuality
SIO_000300: 1.556e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 100
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 857
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
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MQRankSum
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FS
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ReadPosRankSum
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SIO_000300: 3.58e-1

MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 69
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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Other
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allele count: 0
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DP
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MQRankSum
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

African
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allele num: 6153
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Latino
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East Asian
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Other
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European (Finnish)
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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ReadPosRankSum
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QD
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MQRankSum
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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East Asian
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South Asian
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InbreedingCoeff
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FS
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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Other
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allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.346438669718594e-4
allele num: 7427
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.105e0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

FS
type: SiteQuality
SIO_000300: 6.713e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.017e0

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 1.317809e6

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.794076557697681e-5
allele num: 35790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7093
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5241
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2681
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7577
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

DP
type: SiteQuality
SIO_000300: 1.361545e6

VQSLOD
type: SiteQuality
SIO_000300: -8.124e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.832e0

QD
type: SiteQuality
SIO_000300: 7.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37227
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.654302941713868e-4
allele num: 5473
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

QD
type: SiteQuality
SIO_000300: 1.685e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

DP
type: SiteQuality
SIO_000300: 1.403653e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.581977794990963e-4
allele num: 7746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5473
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37227
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

FS
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 9.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

DP
type: SiteQuality
SIO_000300: 1.403653e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
type: SiteQuality
SIO_000300: 1.685e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

GenotypeQuality
all individuals: 491
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 141
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variant carriers: 0

GenotypeQuality
all individuals: 442
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7485
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7947
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.556825445526834e-5
allele num: 39111
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.252e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.507e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 1.454663e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.477393781741608e-5
allele num: 40365
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8089
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 487
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3099
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.388e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.599e0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.121e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 1.48864e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8645
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.585037248375337e-4
allele num: 6309
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 555
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44272
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.141813199360585e-4
allele num: 8758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3603
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

FS
type: SiteQuality
SIO_000300: 1.658e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.121704991587213e-4
allele num: 8915
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8143
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3831
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 1.1461e1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.655813e6

QD
type: SiteQuality
SIO_000300: 6.05e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4005
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9193
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6541
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.209921355111918e-4
allele num: 8265
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9109
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.056e0

DP
type: SiteQuality
SIO_000300: 1.691574e6

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 151
bin: 4.75e1
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GenotypeQuality
all individuals: 1048
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8389
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9199
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.225203337910637e-5
allele num: 47335
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.31e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-2

QD
type: SiteQuality
SIO_000300: 1.486e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.178e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 1.724681e6

GenotypeQuality
all individuals: 816
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2673
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7244
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4365
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.100591715976331e-4
allele num: 8450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47727
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

QD
type: SiteQuality
SIO_000300: 1.8e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.965e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.749703e6

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
all individuals: 1970
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.189797842254111e-5
allele num: 47735
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4365
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8451
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.97e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 1.750046e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.828e0

QD
type: SiteQuality
SIO_000300: 1.863e1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.003e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5898
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7244
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8451
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094723391776116e-5
allele num: 47739
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9963
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.684e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.23e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 3.088e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.750218e6

GenotypeQuality
all individuals: 932
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5902
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37229
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1056
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.366583836232399e-4
allele num: 8451
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47739
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.017450606759602e-4
allele num: 9971
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 1.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

DP
type: SiteQuality
SIO_000300: 1.750316e6

QD
type: SiteQuality
SIO_000300: 1.885e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.88e-1

GenotypeQuality
all individuals: 816
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 1059
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variant carriers: 0

GenotypeQuality
all individuals: 7246
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variant carriers: 1

GenotypeQuality
all individuals: 2086
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 5899
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4379
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094855036031507e-5
allele num: 47736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9973
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.411e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.76e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.054e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.32e-1

QD
type: SiteQuality
SIO_000300: 3.106e1

DP
type: SiteQuality
SIO_000300: 1.748313e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2067
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9251
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6581
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9981
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8431
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.097843416967358e-5
allele num: 47668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.207e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.738663e6

FS
type: SiteQuality
SIO_000300: 2.293e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.33e-1

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 215
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.67379679144385e-3
allele num: 374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 739
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3873
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4479
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.533e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

QD
type: SiteQuality
SIO_000300: 3.23e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 2.36084e5

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7587
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9017
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.070778455937467e-4
allele num: 9339
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 1.223316e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.237e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 600
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 361
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variant carriers: 1

GenotypeQuality
all individuals: 3792
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4245
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
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variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3885
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.251694400036027e-5
allele num: 44411
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 1.225119e6

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.353e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e-1

QD
type: SiteQuality
SIO_000300: 6.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 668
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4590
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9071
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.232242510826376e-5
allele num: 44798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3961
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.337019e6

FS
type: SiteQuality
SIO_000300: 1.275e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.056e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1017
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GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6485
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.215231934783572e-5
allele num: 45142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9097
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9533
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.393e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

QD
type: SiteQuality
SIO_000300: 7.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

VQSLOD
type: SiteQuality
SIO_000300: -2.892e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.365358e6

GenotypeQuality
all individuals: 549
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 342
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GenotypeQuality
all individuals: 1098
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4069
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.038745195803469e-4
allele num: 9627
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.45e-1

QD
type: SiteQuality
SIO_000300: 2.525e1

DP
type: SiteQuality
SIO_000300: 1.391552e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
all individuals: 3367
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 1369
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8081
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.180644598543329e-5
allele num: 45858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9137
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9709
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

DP
type: SiteQuality
SIO_000300: 1.415032e6

MQRankSum
type: SiteQuality
SIO_000300: -1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

FS
type: SiteQuality
SIO_000300: 1.641e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.787e0

QD
type: SiteQuality
SIO_000300: 2.948e1

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 506
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 23

GenotypeQuality
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GenotypeQuality
all individuals: 433
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GenotypeQuality
all individuals: 118
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46051
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 2.926472381416901e-3
allele num: 8201
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.187226596675416e-4
allele num: 9144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4151
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.94e-2

QD
type: SiteQuality
SIO_000300: 1.651e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.507e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

DP
type: SiteQuality
SIO_000300: 1.424658e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6027
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3521
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.378800133212808e-5
allele num: 42038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8773
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.875e0

FS
type: SiteQuality
SIO_000300: 4.208e0

QD
type: SiteQuality
SIO_000300: 1.435e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

DP
type: SiteQuality
SIO_000300: 1.240935e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3165
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.694280584765324e-5
allele num: 38990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 489
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8163
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 1.125304e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2945
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7549
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2765
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 7.390983000739098e-4
allele num: 5412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6793
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 443
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.302e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

FS
type: SiteQuality
SIO_000300: 8.172000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 1.022386e6

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 35480
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 433
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7378
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 7619
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 7.471049682480389e-4
allele num: 2677
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.352265043948614e-4
allele num: 7395
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
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allele num: 6431
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 395
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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East Asian
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allele num: 4931
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.105011488542508e-5
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2288
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Latino
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allele frequency: 1.411432604093155e-4
allele num: 7085
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Other
type: Population
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.366e0

MQ
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SIO_000300: 5.845e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 2.354603249352484e-4
allele num: 4247
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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East Asian
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Latino
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European (Finnish)
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South Asian
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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African
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Latino
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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DP
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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MQ
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.971e1

DP
type: SiteQuality
SIO_000300: 5.47738e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0