X-130413207-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413207
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413207
    reference: chr 0
allele count: 1
allele frequency: 1.140510948905109e-5
allele num: 87680
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1717+38C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1717+38C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1690+38C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1690+38C>G
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

X-130413217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413217
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413217
    reference: chr 0
allele count: 4
allele frequency: 4.563657314972219e-5
allele num: 87649
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1690+28G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1717+28G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1690+28G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1717+28G>A
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-130413228-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413228
    reference: chr 0
allele count: 1
allele frequency: 1.140914328743055e-5
allele num: 87649
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1690+17G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1690+17G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1717+17G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1717+17G>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

X-130413229-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413229
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413229
    reference: chr 0
allele count: 1
allele frequency: 1.140953380644867e-5
allele num: 87646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1717+16G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1690+16G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1690+16G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1717+16G>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

X-130413232-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413232
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413232
    reference: chr 0
allele count: 3
allele frequency: 3.422782037239868e-5
allele num: 87648
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1717+13G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1717+13G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1690+13G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1690+13G>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-130413232-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413232
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413232
    reference: chr 0
allele count: 55
allele frequency: 6.275100401606426e-4
allele num: 87648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1690+13G>C
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1717+13G>C
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1690+13G>C
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1717+13G>C
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-130413234-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413234
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413234
    reference: chr 0
allele count: 1
allele frequency: 1.140797189075726e-5
allele num: 87658
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1717+11G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1690+11G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1690+11G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1717+11G>A
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22503
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

X-130413260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413260
    reference: chr 0
allele count: 1
allele frequency: 1.141396155777747e-5
allele num: 87612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1702G>A
  hgvsp: ENSP00000355010.3:p.Ala568Thr
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1675G>A
  hgvsp: ENSP00000359941.1:p.Ala559Thr
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1675G>A
  hgvsp: ENSP00000359947.1:p.Ala559Thr
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1702G>A
  hgvsp: ENSP00000359940.3:p.Ala568Thr
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10220
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala568Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-130413261-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413261
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413261
    reference: chr 0
allele count: 2
allele frequency: 2.282922597509331e-5
allele num: 87607
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1701G>A
  hgvsp: ENST00000370903.3:c.1701G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1674G>A
  hgvsp: ENST00000370904.1:c.1674G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1674G>A
  hgvsp: ENST00000370910.1:c.1674G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1701G>A
  hgvsp: ENST00000361420.3:c.1701G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr567Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

X-130413284-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413284
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413284
    reference: chr 0
allele count: 1
allele frequency: 1.143824491570013e-5
allele num: 87426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1651G>T
  hgvsp: ENSP00000359947.1:p.Val551Phe
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1651G>T
  hgvsp: ENSP00000359941.1:p.Val551Phe
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1678G>T
  hgvsp: ENSP00000355010.3:p.Val560Phe
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1678G>T
  hgvsp: ENSP00000359940.3:p.Val560Phe
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val560Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-130413296-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413296
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413296
    reference: chr 0
allele count: 5
allele frequency: 5.731972945087699e-5
allele num: 87230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1666A>T
  hgvsp: ENSP00000355010.3:p.Thr556Ser
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1639A>T
  hgvsp: ENSP00000359947.1:p.Thr547Ser
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1639A>T
  hgvsp: ENSP00000359941.1:p.Thr547Ser
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1666A>T
  hgvsp: ENSP00000359940.3:p.Thr556Ser
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27524
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  variant carriers: 0
hgvs: p.Thr556Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

X-130413308-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413308
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413308
    reference: chr 0
allele count: 2
allele frequency: 2.303033094585569e-5
allele num: 86842
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1654T>C
  hgvsp: ENSP00000359940.3:p.Trp552Arg
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1627T>C
  hgvsp: ENSP00000359941.1:p.Trp543Arg
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1654T>C
  hgvsp: ENSP00000355010.3:p.Trp552Arg
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1627T>C
  hgvsp: ENSP00000359947.1:p.Trp543Arg
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2060
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  variant carriers: 0
hgvs: p.Trp552Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

X-130413320-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413320
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413320
    reference: chr 0
allele count: 1
allele frequency: 1.156644343430838e-5
allele num: 86457
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1647-5A>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1620-5A>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1620-5A>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1647-5A>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10178
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1647-5A>T
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-130413323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413323
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413323
    reference: chr 0
allele count: 1
allele frequency: 1.15862772132686e-5
allele num: 86309
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1647-8C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1620-8C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1647-8C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1620-8C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 426
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24200
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1647-8C>T
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-130413332-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413332
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413333
    reference: chr 0
allele count: 1
allele frequency: 1.161764022491752e-5
allele num: 86076
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1647-18dupC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1620-18dupC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1620-18dupC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1647-18dupC
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

X-130413337-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413337
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413337
    reference: chr 0
allele count: 6
allele frequency: 6.990074094785405e-5
allele num: 85836
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1647-22A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1647-22A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1620-22A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1620-22A>G
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 270
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

X-130413338-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413338
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413338
    reference: chr 0
allele count: 1
allele frequency: 1.165025921826761e-5
allele num: 85835
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1620-23C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1620-23C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1647-23C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1647-23C>G
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

X-130413359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413359
    reference: chr 0
allele count: 1
allele frequency: 1.178439275024158e-5
allele num: 84858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1620-44C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1620-44C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1647-44C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1647-44C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

X-130413360-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413360
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413360
    reference: chr 0
allele count: 1
allele frequency: 1.177301624676242e-5
allele num: 84940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1647-45C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1620-45C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1620-45C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1647-45C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

X-130413364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130413364
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130413364
    reference: chr 0
allele count: 1
allele frequency: 1.180874555695948e-5
allele num: 84683
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1620-49C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1647-49C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1620-49C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1647-49C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

X-130415143-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415143
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415143
    reference: chr 0
allele count: 1
allele frequency: 1.158574027087461e-5
allele num: 86313
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1619+49A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1619+49A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1646+49A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1646+49A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.129+49A>G
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21814
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 795
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

X-130415168-A-AGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415168
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415171
    reference: chr 0
allele count: 2
allele frequency: 2.312432794921898e-5
allele num: 86489
alternate allele: AGGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1619+21_1619+23dupCCC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1619+21_1619+23dupCCC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1646+21_1646+23dupCCC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.129+21_129+23dupCCC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1646+21_1646+23dupCCC
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2930
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 90
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genotype quality: GenotypeQuality
  all individuals: 57
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genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 421
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genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 354
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-130415177-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415177
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415177
    reference: chr 0
allele count: 1
allele frequency: 1.158211721102618e-5
allele num: 86340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1619+15C>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1619+15C>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.129+15C>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1646+15C>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1646+15C>A
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21810
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 91
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genotype quality: GenotypeQuality
  all individuals: 581
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genotype quality: GenotypeQuality
  all individuals: 80
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 335
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genotype quality: GenotypeQuality
  all individuals: 642
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genotype quality: GenotypeQuality
  all individuals: 463
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-130415180-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415180
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415181
    reference: chr 0
allele count: 1259
allele frequency: 1.449759333041616e-2
allele num: 86842
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1619+11dupT
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.129+11dupT
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1619+11dupT
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1646+11dupT
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1646+11dupT
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 904
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2883
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genotype depth: GenotypeDepth
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  variant carriers: 20
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 948
genotype depth: GenotypeDepth
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  variant carriers: 19
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 289
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 15
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1177
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 65
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

X-130415185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415185
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415185
    reference: chr 0
allele count: 2
allele frequency: 2.298163767150047e-5
allele num: 87026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1619+7G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1646+7G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.129+7G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1619+7G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1646+7G>A
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21890
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genotype depth: GenotypeDepth
  all individuals: 668
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
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  variant carriers: 0
hgvs: c.1646+7G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-130415188-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415188
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415188
    reference: chr 0
allele count: 1
allele frequency: 1.147749836445648e-5
allele num: 87127
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.129+4A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1619+4A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1646+4A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1619+4A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1646+4A>G
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 497
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genotype quality: GenotypeQuality
  all individuals: 159
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  variant carriers: 0
hgvs: c.1646+4A>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
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X-130415207-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415207
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415207
    reference: chr 0
allele count: 3
allele frequency: 3.424892115898349e-5
allele num: 87594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1604G>A
  hgvsp: ENSP00000359941.1:p.Arg535Gln
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1631G>A
  hgvsp: ENSP00000355010.3:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1604G>A
  hgvsp: ENSP00000359947.1:p.Arg535Gln
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.114G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1631G>A
  hgvsp: ENSP00000359940.3:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg544Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-130415208-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415208
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415208
    reference: chr 0
allele count: 55
allele frequency: 6.277177324552894e-4
allele num: 87619
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1603C>T
  hgvsp: ENSP00000359941.1:p.Arg535Trp
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1630C>T
  hgvsp: ENSP00000359940.3:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.113C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1630C>T
  hgvsp: ENSP00000355010.3:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1603C>T
  hgvsp: ENSP00000359947.1:p.Arg535Trp
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2581
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 24
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hgvs: p.Arg544Trp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

X-130415236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415236
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415236
    reference: chr 0
allele count: 5
allele frequency: 5.700084361248547e-5
allele num: 87718
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1602G>A
  hgvsp: ENST00000370903.3:c.1602G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.85G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1602G>A
  hgvsp: ENST00000361420.3:c.1602G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1575G>A
  hgvsp: ENST00000370910.1:c.1575G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1575G>A
  hgvsp: ENST00000370904.1:c.1575G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21884
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 495
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51539
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu534Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-130415242-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415242
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415242
    reference: chr 0
allele count: 1
allele frequency: 1.140042865611747e-5
allele num: 87716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.79G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1569G>A
  hgvsp: ENST00000370910.1:c.1569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1596G>A
  hgvsp: ENST00000370903.3:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1569G>A
  hgvsp: ENST00000370904.1:c.1569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1596G>A
  hgvsp: ENST00000361420.3:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
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  variant carriers: 0
hgvs: p.Leu532Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

X-130415254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415254
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415254
    reference: chr 0
allele count: 1
allele frequency: 1.140107854203008e-5
allele num: 87711
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1557G>A
  hgvsp: ENST00000370910.1:c.1557G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1557G>A
  hgvsp: ENST00000370904.1:c.1557G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1584G>A
  hgvsp: ENST00000370903.3:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1584G>A
  hgvsp: ENST00000361420.3:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.67G>A
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 831
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
hgvs: p.Gln528Gln
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

X-130415259-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415259
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415259
    reference: chr 0
allele count: 2
allele frequency: 2.280527714113046e-5
allele num: 87699
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1552A>G
  hgvsp: ENSP00000359941.1:p.Met518Val
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1579A>G
  hgvsp: ENSP00000359940.3:p.Met527Val
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.62A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1552A>G
  hgvsp: ENSP00000359947.1:p.Met518Val
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1579A>G
  hgvsp: ENSP00000355010.3:p.Met527Val
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 490
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genotype quality: GenotypeQuality
  all individuals: 51538
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Met527Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

X-130415265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415265
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415265
    reference: chr 0
allele count: 1
allele frequency: 1.140497941401216e-5
allele num: 87681
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1546C>T
  hgvsp: ENST00000370910.1:c.1546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1573C>T
  hgvsp: ENST00000370903.3:c.1573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1546C>T
  hgvsp: ENST00000370904.1:c.1546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1573C>T
  hgvsp: ENST00000361420.3:c.1573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.56C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 3452
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genotype depth: GenotypeDepth
  all individuals: 32
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genotype depth: GenotypeDepth
  all individuals: 1940
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genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 16
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3465
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5587
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genotype quality: GenotypeQuality
  all individuals: 82
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genotype quality: GenotypeQuality
  all individuals: 365
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu525Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-130415272-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415272
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415272
    reference: chr 0
allele count: 1
allele frequency: 1.140849248180345e-5
allele num: 87654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1566G>T
  hgvsp: ENSP00000355010.3:p.Arg522Ser
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.49G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1539G>T
  hgvsp: ENSP00000359947.1:p.Arg513Ser
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1539G>T
  hgvsp: ENSP00000359941.1:p.Arg513Ser
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1566G>T
  hgvsp: ENSP00000359940.3:p.Arg522Ser
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 19
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genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 111
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 365
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg522Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-130415272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415272
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415272
    reference: chr 0
allele count: 3
allele frequency: 3.422547744541036e-5
allele num: 87654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1539G>A
  hgvsp: ENST00000370910.1:c.1539G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1566G>A
  hgvsp: ENST00000361420.3:c.1566G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.49G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1566G>A
  hgvsp: ENST00000370903.3:c.1566G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1539G>A
  hgvsp: ENST00000370904.1:c.1539G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg522Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-130415279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415279
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415279
    reference: chr 0
allele count: 1
allele frequency: 1.141565542985651e-5
allele num: 87599
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1532C>T
  hgvsp: ENSP00000359941.1:p.Ala511Val
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1532C>T
  hgvsp: ENSP00000359947.1:p.Ala511Val
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1559C>T
  hgvsp: ENSP00000359940.3:p.Ala520Val
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.42C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1559C>T
  hgvsp: ENSP00000355010.3:p.Ala520Val
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala520Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-130415280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415280
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415280
    reference: chr 0
allele count: 8
allele frequency: 9.132315841143366e-5
allele num: 87601
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1558G>A
  hgvsp: ENSP00000359940.3:p.Ala520Thr
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1558G>A
  hgvsp: ENSP00000355010.3:p.Ala520Thr
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.41G>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1531G>A
  hgvsp: ENSP00000359947.1:p.Ala511Thr
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1531G>A
  hgvsp: ENSP00000359941.1:p.Ala511Thr
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1939
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51537
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala520Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

X-130415292-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415292
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415292
    reference: chr 0
allele count: 2
allele frequency: 2.286158453642422e-5
allele num: 87483
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1519G>A
  hgvsp: ENSP00000359947.1:p.Val507Ile
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1519G>A
  hgvsp: ENSP00000359941.1:p.Val507Ile
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1546G>A
  hgvsp: ENSP00000355010.3:p.Val516Ile
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1546G>A
  hgvsp: ENSP00000359940.3:p.Val516Ile
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.29G>A
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21881
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 750
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val516Ile
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-130415305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415305
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415305
    reference: chr 0
allele count: 1
allele frequency: 1.146171215056105e-5
allele num: 87247
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1533C>T
  hgvsp: ENST00000370903.3:c.1533C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1506C>T
  hgvsp: ENST00000370904.1:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1533C>T
  hgvsp: ENST00000361420.3:c.1533C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1506C>T
  hgvsp: ENST00000370910.1:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.16C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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hgvs: p.Leu511Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

X-130415307-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415307
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415307
    reference: chr 0
allele count: 1
allele frequency: 1.146841598238451e-5
allele num: 87196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.14C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1531C>G
  hgvsp: ENSP00000359940.3:p.Leu511Val
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1531C>G
  hgvsp: ENSP00000355010.3:p.Leu511Val
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1504C>G
  hgvsp: ENSP00000359941.1:p.Leu502Val
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1504C>G
  hgvsp: ENSP00000359947.1:p.Leu502Val
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 4007
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu511Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-130415308-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415308
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415308
    reference: chr 0
allele count: 1
allele frequency: 1.146762688929153e-5
allele num: 87202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1503T>A
  hgvsp: ENSP00000359947.1:p.Tyr501Ter
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1530T>A
  hgvsp: ENSP00000355010.3:p.Tyr510Ter
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1530T>A
  hgvsp: ENSP00000359940.3:p.Tyr510Ter
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1503T>A
  hgvsp: ENSP00000359941.1:p.Tyr501Ter
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.13T>A
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21880
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 574
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr510Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

X-130415309-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415309
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415309
    reference: chr 0
allele count: 1
allele frequency: 1.147078391337264e-5
allele num: 87178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1529A>G
  hgvsp: ENSP00000355010.3:p.Tyr510Cys
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1502A>G
  hgvsp: ENSP00000359941.1:p.Tyr501Cys
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.12A>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1529A>G
  hgvsp: ENSP00000359940.3:p.Tyr510Cys
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1502A>G
  hgvsp: ENSP00000359947.1:p.Tyr501Cys
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21879
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 425
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genotype quality: GenotypeQuality
  all individuals: 470
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
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genotype quality: GenotypeQuality
  all individuals: 3945
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genotype quality: GenotypeQuality
  all individuals: 60
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr510Cys
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

X-130415315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415315
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415315
    reference: chr 0
allele count: 13
allele frequency: 1.493325981574655e-4
allele num: 87054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1499-3C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1499-3C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1526-3C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1526-3C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147255
  ensembl transcript: ENST00000469836
  gene symbol: IGSF1
  hgvsc: ENST00000469836.1:n.6C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 10
genotype quality: GenotypeQuality
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  variant carriers: 13
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 464
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genotype quality: GenotypeQuality
  all individuals: 392
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 665
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genotype quality: GenotypeQuality
  all individuals: 750
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1526-3C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-130415336-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415336
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415336
    reference: chr 0
allele count: 1
allele frequency: 1.153735217767522e-5
allele num: 86675
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1499-24G>C
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1526-24G>C
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1526-24G>C
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1499-24G>C
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
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genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 801
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21880
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51531
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-130415346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415346
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415346
    reference: chr 0
allele count: 372
allele frequency: 4.30132392900503e-3
allele num: 86485
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1526-34C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1499-34C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1526-34C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1499-34C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 21940
  bin: 9.75e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 422
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51534
  bin: 9.75e1
  variant carriers: 365
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

X-130415353-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415353
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415353
    reference: chr 0
allele count: 1
allele frequency: 1.158560604305211e-5
allele num: 86314
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1526-41T>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1526-41T>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1499-41T>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1499-41T>G
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21882
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 51524
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-130415353-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415353
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415353
    reference: chr 0
allele count: 1
allele frequency: 1.158560604305211e-5
allele num: 86314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1499-41T>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1499-41T>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1526-41T>A
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1526-41T>A
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 242
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 748
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-130415355-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415355
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415354
    reference: chr 0
allele count: 3
allele frequency: 3.478462519566351e-5
allele num: 86245
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1526-44delC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1499-44delC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1526-44delC
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1499-44delC
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51527
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: AG
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-130415363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415363
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415363
    reference: chr 0
allele count: 4
allele frequency: 4.64840617773181e-5
allele num: 86051
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1499-51C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1526-51C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1499-51C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1526-51C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

X-130415592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415592
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415592
    reference: chr 0
allele count: 24
allele frequency: 2.926079906365443e-4
allele num: 82021
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1525+48C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1498+48C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1525+48C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1498+48C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11838
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3752
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 480
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1435
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-130415599-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415599
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415599
    reference: chr 0
allele count: 18
allele frequency: 2.193811015368865e-4
allele num: 82049
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1525+41C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1498+41C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1525+41C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1498+41C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 666
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2015
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-130415601-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415601
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415601
    reference: chr 0
allele count: 1
allele frequency: 1.217922954193918e-5
allele num: 82107
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1525+39C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1498+39C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1498+39C>G
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1525+39C>G
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23770
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

X-130415604-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415604
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415604
    reference: chr 0
allele count: 1
allele frequency: 1.216693028348948e-5
allele num: 82190
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1525+36T>C
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1498+36T>C
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1525+36T>C
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1498+36T>C
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 166
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

X-130415607-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415607
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415607
    reference: chr 0
allele count: 1
allele frequency: 1.215288327155618e-5
allele num: 82285
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1525+33C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1498+33C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1498+33C>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1525+33C>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 405
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-130415637-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415637
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415637
    reference: chr 0
allele count: 2
allele frequency: 2.387689075128637e-5
allele num: 83763
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1525+3G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1498+3G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1525+3G>T
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1498+3G>T
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12543
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.1525+3G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

X-130415643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415643
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415643
    reference: chr 0
allele count: 1
allele frequency: 1.187465118212153e-5
allele num: 84213
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1522G>A
  hgvsp: ENSP00000359940.3:p.Ala508Thr
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1495G>A
  hgvsp: ENSP00000359947.1:p.Ala499Thr
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1495G>A
  hgvsp: ENSP00000359941.1:p.Ala499Thr
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1522G>A
  hgvsp: ENSP00000355010.3:p.Ala508Thr
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala508Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-130415672-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415672
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415672
    reference: chr 0
allele count: 1
allele frequency: 1.160766105629716e-5
allele num: 86150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1466G>A
  hgvsp: ENSP00000359947.1:p.Arg489His
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1493G>A
  hgvsp: ENSP00000359940.3:p.Arg498His
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1493G>A
  hgvsp: ENSP00000355010.3:p.Arg498His
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1466G>A
  hgvsp: ENSP00000359941.1:p.Arg489His
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 252
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  variant carriers: 0
hgvs: p.Arg498His
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

X-130415673-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415673
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415673
    reference: chr 0
allele count: 2
allele frequency: 2.318141777551115e-5
allele num: 86276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1492C>T
  hgvsp: ENSP00000355010.3:p.Arg498Cys
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1465C>T
  hgvsp: ENSP00000359947.1:p.Arg489Cys
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1465C>T
  hgvsp: ENSP00000359941.1:p.Arg489Cys
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1492C>T
  hgvsp: ENSP00000359940.3:p.Arg498Cys
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg498Cys
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

X-130415673-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415673
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415673
    reference: chr 0
allele count: 1
allele frequency: 1.159070888775557e-5
allele num: 86276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1465C>G
  hgvsp: ENSP00000359941.1:p.Arg489Gly
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1492C>G
  hgvsp: ENSP00000355010.3:p.Arg498Gly
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1492C>G
  hgvsp: ENSP00000359940.3:p.Arg498Gly
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1465C>G
  hgvsp: ENSP00000359947.1:p.Arg489Gly
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg498Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-130415673-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415673
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415673
    reference: chr 0
allele count: 8
allele frequency: 9.27256711020446e-5
allele num: 86276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1465C>A
  hgvsp: ENSP00000359941.1:p.Arg489Ser
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1492C>A
  hgvsp: ENSP00000359940.3:p.Arg498Ser
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1492C>A
  hgvsp: ENSP00000355010.3:p.Arg498Ser
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1465C>A
  hgvsp: ENSP00000359947.1:p.Arg489Ser
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2057
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23763
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 17055
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg498Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-130415679-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415679
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415678
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86717
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1458delG
  hgvsp: ENSP00000359941.1:p.Trp486CysfsTer8
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1485delG
  hgvsp: ENSP00000355010.3:p.Trp495CysfsTer8
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1458delG
  hgvsp: ENSP00000359947.1:p.Trp486CysfsTer8
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1485delG
  hgvsp: ENSP00000359940.3:p.Trp495CysfsTer8
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 80
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17
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genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17832
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
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genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Trp495CysfsTer8
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: AC
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

X-130415697-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415697
    reference: chr 0
allele count: 1
allele frequency: 1.144073129154415e-5
allele num: 87407
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1468A>G
  hgvsp: ENSP00000355010.3:p.Thr490Ala
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1441A>G
  hgvsp: ENSP00000359947.1:p.Thr481Ala
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1441A>G
  hgvsp: ENSP00000359941.1:p.Thr481Ala
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1468A>G
  hgvsp: ENSP00000359940.3:p.Thr490Ala
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
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genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 941
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 340
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23766
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  variant carriers: 1
hgvs: p.Thr490Ala
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-130415703-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415703
    reference: chr 0
allele count: 3
allele frequency: 3.4273180094137e-5
allele num: 87532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1435G>T
  hgvsp: ENSP00000359941.1:p.Val479Leu
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1462G>T
  hgvsp: ENSP00000355010.3:p.Val488Leu
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1435G>T
  hgvsp: ENSP00000359947.1:p.Val479Leu
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1462G>T
  hgvsp: ENSP00000359940.3:p.Val488Leu
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8844
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 78
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hgvs: p.Val488Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

X-130415703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415703
    reference: chr 0
allele count: 6
allele frequency: 6.8546360188274e-5
allele num: 87532
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1462G>A
  hgvsp: ENSP00000359940.3:p.Val488Ile
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1435G>A
  hgvsp: ENSP00000359947.1:p.Val479Ile
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1462G>A
  hgvsp: ENSP00000355010.3:p.Val488Ile
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1435G>A
  hgvsp: ENSP00000359941.1:p.Val479Ile
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5856
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val488Ile
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-130415704-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415704
    reference: chr 0
allele count: 11
allele frequency: 1.256008860571598e-4
allele num: 87579
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1434C>T
  hgvsp: ENST00000370904.1:c.1434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1434C>T
  hgvsp: ENST00000370910.1:c.1434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1461C>T
  hgvsp: ENST00000361420.3:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1461C>T
  hgvsp: ENST00000370903.3:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 3767
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 176
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 194
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2471
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genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Arg487Arg
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-130415705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415705
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415705
    reference: chr 0
allele count: 2
allele frequency: 2.283391750105607e-5
allele num: 87589
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1433G>A
  hgvsp: ENSP00000359941.1:p.Arg478His
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1433G>A
  hgvsp: ENSP00000359947.1:p.Arg478His
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1460G>A
  hgvsp: ENSP00000359940.3:p.Arg487His
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1460G>A
  hgvsp: ENSP00000355010.3:p.Arg487His
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 940
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2882
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5864
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  variant carriers: 0
hgvs: p.Arg487His
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

X-130415725-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415725
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415725
    reference: chr 0
allele count: 6
allele frequency: 6.841037101224545e-5
allele num: 87706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1440G>C
  hgvsp: ENST00000361420.3:c.1440G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1440G>C
  hgvsp: ENST00000370903.3:c.1440G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1413G>C
  hgvsp: ENST00000370910.1:c.1413G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1413G>C
  hgvsp: ENST00000370904.1:c.1413G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1888
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hgvs: p.Gly480Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-130415734-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415734
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415734
    reference: chr 0
allele count: 2
allele frequency: 2.280293701828796e-5
allele num: 87708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1431A>C
  hgvsp: ENSP00000355010.3:p.Lys477Asn
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1404A>C
  hgvsp: ENSP00000359941.1:p.Lys468Asn
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1404A>C
  hgvsp: ENSP00000359947.1:p.Lys468Asn
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1431A>C
  hgvsp: ENSP00000359940.3:p.Lys477Asn
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19225
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys477Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

X-130415740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415740
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415740
    reference: chr 0
allele count: 35
allele frequency: 3.990513978200392e-4
allele num: 87708
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1425C>T
  hgvsp: ENST00000370903.3:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1425C>T
  hgvsp: ENST00000361420.3:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1398C>T
  hgvsp: ENST00000370904.1:c.1398C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1398C>T
  hgvsp: ENST00000370910.1:c.1398C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19196
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  variant carriers: 0
hgvs: p.Asp475Asp
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

X-130415746-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415746
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415746
    reference: chr 0
allele count: 2
allele frequency: 2.28018971178402e-5
allele num: 87712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1392T>C
  hgvsp: ENST00000370910.1:c.1392T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1419T>C
  hgvsp: ENST00000370903.3:c.1419T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1392T>C
  hgvsp: ENST00000370904.1:c.1392T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1419T>C
  hgvsp: ENST00000361420.3:c.1419T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
hgvs: p.Asn473Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

X-130415763-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415763
    reference: chr 0
allele count: 1
allele frequency: 1.14028986168284e-5
allele num: 87697
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1402G>C
  hgvsp: ENSP00000355010.3:p.Asp468His
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1402G>C
  hgvsp: ENSP00000359940.3:p.Asp468His
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1375G>C
  hgvsp: ENSP00000359947.1:p.Asp459His
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1375G>C
  hgvsp: ENSP00000359941.1:p.Asp459His
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asp468His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

X-130415766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415766
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415766
    reference: chr 0
allele count: 1
allele frequency: 1.140367882678952e-5
allele num: 87691
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1372G>A
  hgvsp: ENSP00000359941.1:p.Gly458Arg
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1399G>A
  hgvsp: ENSP00000355010.3:p.Gly467Arg
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1372G>A
  hgvsp: ENSP00000359947.1:p.Gly458Arg
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1399G>A
  hgvsp: ENSP00000359940.3:p.Gly467Arg
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly467Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-130415772-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415772
    reference: chr 0
allele count: 2
allele frequency: 2.280449704681763e-5
allele num: 87702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1366G>T
  hgvsp: ENSP00000359941.1:p.Val456Leu
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1393G>T
  hgvsp: ENSP00000359940.3:p.Val465Leu
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1366G>T
  hgvsp: ENSP00000359947.1:p.Val456Leu
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1393G>T
  hgvsp: ENSP00000355010.3:p.Val465Leu
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23753
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Val465Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-130415775-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415775
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415775
    reference: chr 0
allele count: 1
allele frequency: 1.140250855188141e-5
allele num: 87700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1390T>C
  hgvsp: ENSP00000355010.3:p.Ser464Pro
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1363T>C
  hgvsp: ENSP00000359941.1:p.Ser455Pro
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1363T>C
  hgvsp: ENSP00000359947.1:p.Ser455Pro
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1390T>C
  hgvsp: ENSP00000359940.3:p.Ser464Pro
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser464Pro
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-130415796-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24130415796
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24130415796
    reference: chr 0
allele count: 1
allele frequency: 1.140549973197076e-5
allele num: 87677
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359940
  ensembl transcript: ENST00000370903
  gene symbol: IGSF1
  hgvsc: ENST00000370903.3:c.1369A>G
  hgvsp: ENSP00000359940.3:p.Arg457Gly
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359941
  ensembl transcript: ENST00000370904
  gene symbol: IGSF1
  hgvsc: ENST00000370904.1:c.1342A>G
  hgvsp: ENSP00000359941.1:p.Arg448Gly
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000359947
  ensembl transcript: ENST00000370910
  gene symbol: IGSF1
  hgvsc: ENST00000370910.1:c.1342A>G
  hgvsp: ENSP00000359947.1:p.Arg448Gly
  variant of: http://identifiers.org/hgnc/5948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147255
  ensembl protein: ENSP00000355010
  ensembl transcript: ENST00000361420
  gene symbol: IGSF1
  hgvsc: ENST00000361420.3:c.1369A>G
  hgvsp: ENSP00000355010.3:p.Arg457Gly
  variant of: http://identifiers.org/hgnc/5948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg457Gly
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3808
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10330
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.0860713019171e-5
allele num: 47937
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.119e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.329e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 2.003338e6

VQSLOD
type: SiteQuality
SIO_000300: -7.644e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

QD
type: SiteQuality
SIO_000300: 1.851e1

GenotypeQuality
all individuals: 2125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.219920575292476e-4
allele num: 9317
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47915
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.997804e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.768e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 1.431e0

VQSLOD
type: SiteQuality
SIO_000300: -3.188e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

GenotypeQuality
all individuals: 8841
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47913
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 1.317e0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

DP
type: SiteQuality
SIO_000300: 1.992916e6

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.962e0

QD
type: SiteQuality
SIO_000300: 1.418e1

GenotypeQuality
all individuals: 2109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.087116231502932e-5
allele num: 47913
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

FS
type: SiteQuality
SIO_000300: 4.486e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.488e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.929e-1

DP
type: SiteQuality
SIO_000300: 1.992593e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.260564702936204e-5
allele num: 47919
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.768e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.839e0

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

FS
type: SiteQuality
SIO_000300: 1.112e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.991496e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 48

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
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allele frequency: 5.58299334335409e-3
allele num: 9314
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8501
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Other
type: Population
allele count: 1
allele frequency: 1.579778830963665e-3
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.17370980195747e-5
allele num: 47919
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.991496e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.839e0

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

QD
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SIO_000300: 1.768e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.148e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47925
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Other
type: Population
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allele frequency: 0.0e0
allele num: 633
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.988933e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47907
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.021e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.64e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.984112e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.175016700066801e-5
allele num: 47904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

DP
type: SiteQuality
SIO_000300: 1.983761e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

QD
type: SiteQuality
SIO_000300: 1.742e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8481
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.092925910422771e-5
allele num: 47780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10071
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.72e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 1.973525e6

VQSLOD
type: SiteQuality
SIO_000300: -2.235e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 4.415e0

QD
type: SiteQuality
SIO_000300: 9.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 1.049207848074704e-4
allele num: 47655
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10041
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.365e-1

FS
type: SiteQuality
SIO_000300: 5.877e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47412
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4503
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Latino
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allele count: 2
allele frequency: 2.153547970281038e-4
allele num: 9287
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
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MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 2.124e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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African
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allele frequency: 0.0e0
allele num: 8344
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South Asian
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European (Finnish)
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allele count: 1
allele frequency: 2.225189141076991e-4
allele num: 4494
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Other
type: Population
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47174
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.039e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.909e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.911952e6

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9938
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6599
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.124044180118946e-5
allele num: 47080
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
type: Population
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BaseQRankSum
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VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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South Asian
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Latino
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allele frequency: 1.081665765278529e-4
allele num: 9245
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 46944
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.28251715366693e-4
allele num: 46783
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European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8263
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9883
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6581
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 1.903e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.04e-1

DP
type: SiteQuality
SIO_000300: 1.819435e6

GenotypeQuality
all individuals: 1254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6581
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9237
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.137482900136799e-5
allele num: 46784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9881
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8265
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 2.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.215e0

FS
type: SiteQuality
SIO_000300: 2.669e0

VQSLOD
type: SiteQuality
SIO_000300: -3.003e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.641e0

DP
type: SiteQuality
SIO_000300: 1.818636e6

GenotypeQuality
all individuals: 4570
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3396
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GenotypeQuality
all individuals: 2815
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.256317689530686e-4
allele num: 4432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46229
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9709
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.098e1

VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.544e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

DP
type: SiteQuality
SIO_000300: 1.708378e6

FS
type: SiteQuality
SIO_000300: 3.972e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

GenotypeQuality
all individuals: 10289
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variant carriers: 0

GenotypeQuality
all individuals: 10144
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variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8191
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4437
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9725
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9181
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.161648040466051e-5
allele num: 46261
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.062e0

QD
type: SiteQuality
SIO_000300: 3.067e1

DP
type: SiteQuality
SIO_000300: 1.707737e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4603
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variant carriers: 0

GenotypeQuality
all individuals: 4018
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9171
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.168209709243078e-5
allele num: 46121
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6517
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.698121e6

QD
type: SiteQuality
SIO_000300: 1.55e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.097623392696075e-5
allele num: 47673
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9039
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 5.105847e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

QD
type: SiteQuality
SIO_000300: 3.427e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074344649763644e-4
allele num: 9308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8451
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.083893344894862e-4
allele num: 9226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47713
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.594e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.96e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.852e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.344e1

DP
type: SiteQuality
SIO_000300: 5.123521e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.024e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094679514034353e-5
allele num: 47740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e0

QD
type: SiteQuality
SIO_000300: 1.339e1

DP
type: SiteQuality
SIO_000300: 5.138761e6

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.693e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.837e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.834e0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 393
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele count: 1183
allele frequency: 1.390292631331531e-1
allele num: 8509
num of homozygotes: 65

Latino
type: Population
allele count: 47
allele frequency: 5.048877430443657e-3
allele num: 9309
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 5.023863350916855e-4
allele num: 47772
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 7.961783439490446e-3
allele num: 628
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.869e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

MQ
type: SiteQuality
SIO_000300: 6.009e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

DP
type: SiteQuality
SIO_000300: 5.196843e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

FS
type: SiteQuality
SIO_000300: 5.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.183487773756981e-5
allele num: 47807
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

FS
type: SiteQuality
SIO_000300: 3.142e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.82e-2

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 2.137e1

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.071e0

DP
type: SiteQuality
SIO_000300: 5.139214e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.307e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090475792290325e-5
allele num: 47836
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.918e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.54e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.368e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 2.994310809462022e-4
allele num: 10019
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

DP
type: SiteQuality
SIO_000300: 5.155136e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.781e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 46
allele frequency: 6.930842248003616e-3
allele num: 6637
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.973500697350069e-4
allele num: 10038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.170924485412192e-5
allele num: 47951
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.046e-1

DP
type: SiteQuality
SIO_000300: 5.160068e6

QD
type: SiteQuality
SIO_000300: 1.927e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

FS
type: SiteQuality
SIO_000300: 5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.944131316127757e-4
allele num: 10113
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47977
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

FS
type: SiteQuality
SIO_000300: 9.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 5.157513e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.223e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

QD
type: SiteQuality
SIO_000300: 2.962e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47975
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506931886678722e-4
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.98e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.218999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 5.157348e6

QD
type: SiteQuality
SIO_000300: 1.11e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.888262632255513e-5
allele num: 10113
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47972
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.393e0

FS
type: SiteQuality
SIO_000300: 5.829e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.157176e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.169446297531687e-5
allele num: 47968
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.157063e6

QD
type: SiteQuality
SIO_000300: 2.296e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

FS
type: SiteQuality
SIO_000300: 3.627e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.035e-1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085244807740429e-5
allele num: 47956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.253e1

DP
type: SiteQuality
SIO_000300: 5.156732e6

VQSLOD
type: SiteQuality
SIO_000300: 5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.929e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.66e0

FS
type: SiteQuality
SIO_000300: 1.085e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47948
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.898050084133426e-5
allele num: 10103
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.375e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.156458e6

QD
type: SiteQuality
SIO_000300: 1.557e1

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.14e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10103
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.256778176357721e-5
allele num: 47948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.375e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.076e0

MQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

DP
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SIO_000300: 5.156458e6

BaseQRankSum
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SIO_000300: -2.14e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 1.073767851390529e-4
allele num: 9313
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8489
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47925
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.113e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e0

FS
type: SiteQuality
SIO_000300: 4.31e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.155161e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

Other
type: Population
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allele frequency: 3.164556962025316e-3
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 1.251903937237883e-4
allele num: 47927
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8489
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.036e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
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Other
type: Population
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allele num: 632
num of homozygotes: 0

Latino
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.176062807984632e-5
allele num: 47892
num of homozygotes: 0

South Asian
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allele num: 10008
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47837
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.015640869388584e-4
allele num: 9846
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 3.303e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -2.555e0

DP
type: SiteQuality
SIO_000300: 5.14009e6

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51536
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.091087783865167e-5
allele num: 47822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9815
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.137761e6

QD
type: SiteQuality
SIO_000300: 2.135e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.480000000000001e-2

FS
type: SiteQuality
SIO_000300: 6.719e0

VQSLOD
type: SiteQuality
SIO_000300: -1.044e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

GenotypeQuality
all individuals: 677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9817
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090912892568895e-5
allele num: 47826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.376e1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 5.137697e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.49e-2

GenotypeQuality
all individuals: 1026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51536
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.181195369714151e-4
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47819
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.4e1

DP
type: SiteQuality
SIO_000300: 5.136491e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.17e0

FS
type: SiteQuality
SIO_000300: 5.331e0

VQSLOD
type: SiteQuality
SIO_000300: -2.079e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: -1.432e0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.720234358652438e-4
allele num: 47790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.131414e6

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 1.051e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.306e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.508e0

QD
type: SiteQuality
SIO_000300: 2.075e1

GenotypeQuality
all individuals: 379
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9479
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47661
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511030522816561e-4
allele num: 6618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.113473e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

QD
type: SiteQuality
SIO_000300: 1.453e1

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 5.648e0

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.562e0

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.209e0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1759
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 4.301537799763416e-4
allele num: 9299
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.205128205128205e-3
allele num: 624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 314
allele frequency: 6.594976056456356e-3
allele num: 47612
num of homozygotes: 2

African
type: Population
allele count: 10
allele frequency: 1.184413123297406e-3
allele num: 8443
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 42
allele frequency: 9.277667329357191e-3
allele num: 4527
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

QD
type: SiteQuality
SIO_000300: 1.87e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.855e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.052e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.082e1

DP
type: SiteQuality
SIO_000300: 5.118923e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 1209
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.102076851929706e-5
allele num: 47572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.175e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

MQRankSum
type: SiteQuality
SIO_000300: -1.288e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.724e0

FS
type: SiteQuality
SIO_000300: 6.201e0

DP
type: SiteQuality
SIO_000300: 5.103625e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.130000000000001e0

QD
type: SiteQuality
SIO_000300: 2.098e1

GenotypeQuality
all individuals: 1209
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.081548777849881e-4
allele num: 9246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.288e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.130000000000001e0

QD
type: SiteQuality
SIO_000300: 2.098e1

FS
type: SiteQuality
SIO_000300: 6.201e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

VQSLOD
type: SiteQuality
SIO_000300: -2.175e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.724e0

DP
type: SiteQuality
SIO_000300: 5.103625e6

GenotypeQuality
all individuals: 274
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.307689072979963e-5
allele num: 47561
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9185
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.102552e6

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

FS
type: SiteQuality
SIO_000300: 2.843e0

MQ
type: SiteQuality
SIO_000300: 6.034e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.38e-2

QD
type: SiteQuality
SIO_000300: 1.792e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.203e0

GenotypeQuality
all individuals: 51525
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.41940117114131e-4
allele num: 9051
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.1007e6

QD
type: SiteQuality
SIO_000300: 3.118e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.916e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.36e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.747e0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3025
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 3.22254925129439e-4
allele num: 46547
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.420866489832007e-4
allele num: 4524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.58202816010125e-4
allele num: 6321
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 9.099181073703367e-4
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.469982e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

FS
type: SiteQuality
SIO_000300: 2.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.21e-2

QD
type: SiteQuality
SIO_000300: 1.791e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

GenotypeQuality
all individuals: 23777
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 16
allele frequency: 1.955034213098729e-3
allele num: 8184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.155869354317128e-4
allele num: 9277
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46545
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6595
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.545e1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.05e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 5.94e-1

DP
type: SiteQuality
SIO_000300: 2.473661e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

GenotypeQuality
all individuals: 2442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6369
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.147858584990764e-5
allele num: 46558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9277
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.914e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

QD
type: SiteQuality
SIO_000300: 2.729e1

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 2.474522e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8241
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.078167115902965e-4
allele num: 9275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6395
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46579
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.477326e6

MQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9279
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 4.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.391e0

FS
type: SiteQuality
SIO_000300: 5.155e0

DP
type: SiteQuality
SIO_000300: 2.480451e6

QD
type: SiteQuality
SIO_000300: 1.405e1

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47047
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.76243093922652e-4
allele num: 7240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9289
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8455
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.246e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.66e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.052e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.508249e6

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.029e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.120171309841835e-5
allele num: 47166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.213e0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

FS
type: SiteQuality
SIO_000300: 1.681e0

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

DP
type: SiteQuality
SIO_000300: 2.515027e6

QD
type: SiteQuality
SIO_000300: 1.398e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8889
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

FS
type: SiteQuality
SIO_000300: 4.803e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.12e0

DP
type: SiteQuality
SIO_000300: 2.544707e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8985
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09643605870021e-5
allele num: 47700
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.546652e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.115e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 1.959e0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09643605870021e-5
allele num: 47700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8985
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 1.959e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.115e-1

DP
type: SiteQuality
SIO_000300: 2.546652e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.677148846960168e-4
allele num: 47700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8985
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.115e-1

FS
type: SiteQuality
SIO_000300: 1.959e0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

DP
type: SiteQuality
SIO_000300: 2.546652e6

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 47786
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.554495e6

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506931886678722e-4
allele num: 6636
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.926e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47938
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 3.007518796992481e-4
allele num: 9975
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.602e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.926e1

FS
type: SiteQuality
SIO_000300: 2.255e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.573783e6

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3048
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.258083357670324e-5
allele num: 47938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.208480565371025e-4
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.005012531328321e-4
allele num: 9975
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.926e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.602e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

FS
type: SiteQuality
SIO_000300: 2.255e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

DP
type: SiteQuality
SIO_000300: 2.573783e6

QD
type: SiteQuality
SIO_000300: 2.117e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23772
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085723224528105e-5
allele num: 47945
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.219575016097875e-4
allele num: 9318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.994604855629933e-4
allele num: 10009
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 2.061e1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 2.574358e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.694e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.082e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

GenotypeQuality
all individuals: 2470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10021
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085810232985003e-5
allele num: 47943
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.888e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.98e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

DP
type: SiteQuality
SIO_000300: 2.574979e6

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.178e0

QD
type: SiteQuality
SIO_000300: 2.358e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3071
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.43915003219575e-4
allele num: 9318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10105
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47971
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.529e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.745e1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.43e-1

DP
type: SiteQuality
SIO_000300: 2.576138e6

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23764
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3043
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.169011735768036e-5
allele num: 47973
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10107
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.26e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.25e-1

FS
type: SiteQuality
SIO_000300: 4.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.575613e6

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23765
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2480
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 34
allele frequency: 3.994360902255639e-3
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47973
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073306858430825e-4
allele num: 9317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.584e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

DP
type: SiteQuality
SIO_000300: 2.575992e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.621e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23761
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.01340967304505e-4
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.992e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.06e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.578e0

FS
type: SiteQuality
SIO_000300: 2.293e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.232e0

QD
type: SiteQuality
SIO_000300: 1.702e1

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 2.573583e6

GenotypeQuality
all individuals: 23757
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18815
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47969
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175226231049477e-4
allele num: 8509
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.569207e6

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.274e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 1.396e1

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 2.346e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 23752
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507613447911955e-4
allele num: 6633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47967
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.339e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: -5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 4.024e0

QD
type: SiteQuality
SIO_000300: 9.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

DP
type: SiteQuality
SIO_000300: 2.56882e6

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.350452462098954e-4
allele num: 8509
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.38e-1

FS
type: SiteQuality
SIO_000300: 4.247e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.198e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

DP
type: SiteQuality
SIO_000300: 2.565593e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.45e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.217e0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23754
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084505867884018e-5
allele num: 47973
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 2.074e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.155e0

QD
type: SiteQuality
SIO_000300: 1.465e1

DP
type: SiteQuality
SIO_000300: 2.563802e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4