X-51644687-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644687
    reference: chr 0
allele count: 1
allele frequency: 1.427409109724938e-5
allele num: 70057
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2166C>T
  hgvsp: ENST00000375695.2:c.2166C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.1998C>T
  hgvsp: ENST00000326587.7:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.187C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.1998C>T
  hgvsp: ENST00000375722.1:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4655C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2352C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.1998C>T
  hgvsp: ENST00000375772.3:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe722Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-51644699-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644699
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644699
    reference: chr 0
allele count: 1
allele frequency: 1.367839360945451e-5
allele num: 73108
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2178A>G
  hgvsp: ENST00000375695.2:c.2178A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2364A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.199A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2010A>G
  hgvsp: ENST00000375722.1:c.2010A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4667A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2010A>G
  hgvsp: ENST00000326587.7:c.2010A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2010A>G
  hgvsp: ENST00000375772.3:c.2010A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
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genotype depth: GenotypeDepth
  all individuals: 6394
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala726Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

X-51644714-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644714
    reference: chr 0
allele count: 257
allele frequency: 3.412244247646614e-3
allele num: 75317
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2025T>C
  hgvsp: ENST00000326587.7:c.2025T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2379T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4682T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2025T>C
  hgvsp: ENST00000375722.1:c.2025T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2193T>C
  hgvsp: ENST00000375695.2:c.2193T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2025T>C
  hgvsp: ENST00000375772.3:c.2025T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.214T>C
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31104
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1607
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  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7575
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 10504
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3979
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  variant carriers: 11
genotype depth: GenotypeDepth
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  variant carriers: 31
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 383
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1500
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 246
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Asp731Asp
num of homozygotes: 2
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

X-51644718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644718
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644718
    reference: chr 0
allele count: 4
allele frequency: 5.266068090260407e-5
allele num: 75958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2383C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2029C>T
  hgvsp: ENST00000375722.1:c.2029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.218C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4686C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2029C>T
  hgvsp: ENST00000375772.3:c.2029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2197C>T
  hgvsp: ENST00000375695.2:c.2197C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2029C>T
  hgvsp: ENST00000326587.7:c.2029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31459
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu733Leu
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-51644727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644727
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644727
    reference: chr 0
allele count: 1
allele frequency: 1.288526955983919e-5
allele num: 77608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.227G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2038G>A
  hgvsp: ENSP00000325333.7:p.Ala680Thr
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2038G>A
  hgvsp: ENSP00000364927.3:p.Ala680Thr
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2038G>A
  hgvsp: ENSP00000364874.1:p.Ala680Thr
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2206G>A
  hgvsp: ENSP00000364847.2:p.Ala736Thr
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2392G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4695G>A
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala736Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

X-51644730-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644730
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644730
    reference: chr 0
allele count: 1
allele frequency: 1.277171830698102e-5
allele num: 78298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4698G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2041G>T
  hgvsp: ENSP00000364874.1:p.Ala681Ser
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2041G>T
  hgvsp: ENSP00000364927.3:p.Ala681Ser
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2041G>T
  hgvsp: ENSP00000325333.7:p.Ala681Ser
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.230G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2395G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2209G>T
  hgvsp: ENSP00000364847.2:p.Ala737Ser
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala737Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-51644741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644741
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644741
    reference: chr 0
allele count: 21
allele frequency: 2.623393171682344e-4
allele num: 80049
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2052C>T
  hgvsp: ENST00000375772.3:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4709C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2052C>T
  hgvsp: ENST00000375722.1:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2220C>T
  hgvsp: ENST00000375695.2:c.2220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2052C>T
  hgvsp: ENST00000326587.7:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2406C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.241C>T
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34539
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8065
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37873
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Ala740Ala
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-51644742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644742
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644742
    reference: chr 0
allele count: 18
allele frequency: 2.23811004041032e-4
allele num: 80425
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2221G>A
  hgvsp: ENSP00000364847.2:p.Glu741Lys
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4710G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2053G>A
  hgvsp: ENSP00000364874.1:p.Glu685Lys
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2407G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2053G>A
  hgvsp: ENSP00000325333.7:p.Glu685Lys
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.242G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2053G>A
  hgvsp: ENSP00000364927.3:p.Glu685Lys
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6636
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9742
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34862
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7790
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu741Lys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

X-51644748-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644748
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644748
    reference: chr 0
allele count: 11737
allele frequency: 1.432494446749823e-1
allele num: 81934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2413C>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2059C>A
  hgvsp: ENST00000326587.7:c.2059C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4716C>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2059C>A
  hgvsp: ENST00000375722.1:c.2059C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2059C>A
  hgvsp: ENST00000375772.3:c.2059C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2227C>A
  hgvsp: ENST00000375695.2:c.2227C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.248C>A
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30553
  bin: 2.25e1
  variant carriers: 1333
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.25e1
  variant carriers: 953
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 969
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 334
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 860
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 7.5e0
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.25e1
  variant carriers: 1034
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 1.25e1
  variant carriers: 648
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 619
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 2.75e1
  variant carriers: 1207
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 460
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 737
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 1.75e1
  variant carriers: 1219
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 443
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 3.25e1
  variant carriers: 268
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 4.25e1
  variant carriers: 237
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 6.75e1
  variant carriers: 337
genotype quality: GenotypeQuality
  all individuals: 7537
  bin: 9.75e1
  variant carriers: 7255
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.25e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 2.75e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 33257
  bin: 6.25e1
  variant carriers: 396
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.5e0
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 403
hgvs: p.Arg743Arg
num of homozygotes: 622
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-51644764-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644764
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644764
    reference: chr 0
allele count: 1
allele frequency: 1.184539391857476e-5
allele num: 84421
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2075C>A
  hgvsp: ENSP00000325333.7:p.Thr692Asn
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.264C>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2429C>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2075C>A
  hgvsp: ENSP00000364927.3:p.Thr692Asn
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2243C>A
  hgvsp: ENSP00000364847.2:p.Thr748Asn
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2075C>A
  hgvsp: ENSP00000364874.1:p.Thr692Asn
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4732C>A
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43951
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr748Asn
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-51644767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644767
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644767
    reference: chr 0
allele count: 1
allele frequency: 1.181251181251181e-5
allele num: 84656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2078G>A
  hgvsp: ENSP00000364874.1:p.Arg693His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2078G>A
  hgvsp: ENSP00000325333.7:p.Arg693His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4735G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.267G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2432G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2078G>A
  hgvsp: ENSP00000364927.3:p.Arg693His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2246G>A
  hgvsp: ENSP00000364847.2:p.Arg749His
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg749His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

X-51644807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644807
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644807
    reference: chr 0
allele count: 1
allele frequency: 1.159097758304935e-5
allele num: 86274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2118C>T
  hgvsp: ENST00000375772.3:c.2118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2472C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2118C>T
  hgvsp: ENST00000326587.7:c.2118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4775C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2286C>T
  hgvsp: ENST00000375695.2:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2118C>T
  hgvsp: ENST00000375722.1:c.2118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.307C>T
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser762Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP

X-51644822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644822
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644822
    reference: chr 0
allele count: 1
allele frequency: 1.156229765979095e-5
allele num: 86488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2133G>A
  hgvsp: ENST00000375722.1:c.2133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2133G>A
  hgvsp: ENST00000326587.7:c.2133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.322G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2301G>A
  hgvsp: ENST00000375695.2:c.2301G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2133G>A
  hgvsp: ENST00000375772.3:c.2133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4790G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2487G>A
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu767Glu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

X-51644868-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644868
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644868
    reference: chr 0
allele count: 1
allele frequency: 1.151476768956186e-5
allele num: 86845
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2179T>C
  hgvsp: ENSP00000364874.1:p.Trp727Arg
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2179T>C
  hgvsp: ENSP00000325333.7:p.Trp727Arg
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4836T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2347T>C
  hgvsp: ENSP00000364847.2:p.Trp783Arg
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2533T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.368T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2179T>C
  hgvsp: ENSP00000364927.3:p.Trp727Arg
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Trp783Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

X-51644876-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644876
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644876
    reference: chr 0
allele count: 1
allele frequency: 1.151635898794237e-5
allele num: 86833
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2187A>G
  hgvsp: ENST00000375722.1:c.2187A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2541A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2355A>G
  hgvsp: ENST00000375695.2:c.2355A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.376A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2187A>G
  hgvsp: ENST00000326587.7:c.2187A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2187A>G
  hgvsp: ENST00000375772.3:c.2187A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4844A>G
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg785Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-51644901-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644901
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644901
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86491
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4869T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2566T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2212T>C
  hgvsp: ENSP00000364874.1:p.Tyr738His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2212T>C
  hgvsp: ENSP00000364927.3:p.Tyr738His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2212T>C
  hgvsp: ENSP00000325333.7:p.Tyr738His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.401T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2380T>C
  hgvsp: ENSP00000364847.2:p.Tyr794His
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17340
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr794His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-51644909-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644909
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644909
    reference: chr 0
allele count: 1
allele frequency: 1.159958241503306e-5
allele num: 86210
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2388G>T
  hgvsp: ENSP00000364847.2:p.Gln796His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2220G>T
  hgvsp: ENSP00000364874.1:p.Gln740His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.409G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2220G>T
  hgvsp: ENSP00000325333.7:p.Gln740His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2574G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2220G>T
  hgvsp: ENSP00000364927.3:p.Gln740His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4877G>T
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 48181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln796His
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

X-51644915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644915
    reference: chr 0
allele count: 3
allele frequency: 3.492067187372685e-5
allele num: 85909
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2226C>T
  hgvsp: ENST00000375722.1:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2226C>T
  hgvsp: ENST00000375772.3:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2394C>T
  hgvsp: ENST00000375695.2:c.2394C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2226C>T
  hgvsp: ENST00000326587.7:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2580C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4883C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.415C>T
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala798Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-51644917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644917
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644917
    reference: chr 0
allele count: 4
allele frequency: 4.663363450888953e-5
allele num: 85775
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2228G>A
  hgvsp: ENSP00000364874.1:p.Arg743His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2228G>A
  hgvsp: ENSP00000325333.7:p.Arg743His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.417G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2396G>A
  hgvsp: ENSP00000364847.2:p.Arg799His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4885G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2228G>A
  hgvsp: ENSP00000364927.3:p.Arg743His
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2582G>A
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47225
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg799His
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

X-51644921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644921
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644921
    reference: chr 0
allele count: 1
allele frequency: 1.171385397509635e-5
allele num: 85369
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2400C>T
  hgvsp: ENST00000375695.2:c.2400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2232C>T
  hgvsp: ENST00000375722.1:c.2232C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.421C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2586C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4889C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2232C>T
  hgvsp: ENST00000375772.3:c.2232C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2232C>T
  hgvsp: ENST00000326587.7:c.2232C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser800Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-51644932-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644932
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644932
    reference: chr 0
allele count: 1
allele frequency: 1.18120932210397e-5
allele num: 84659
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4900A>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2411A>C
  hgvsp: ENSP00000364847.2:p.Gln804Pro
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.432A>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2243A>C
  hgvsp: ENSP00000364874.1:p.Gln748Pro
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2243A>C
  hgvsp: ENSP00000364927.3:p.Gln748Pro
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2597A>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2243A>C
  hgvsp: ENSP00000325333.7:p.Gln748Pro
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16308
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3969
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln804Pro
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-51644937-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644937
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644937
    reference: chr 0
allele count: 1
allele frequency: 1.189782150888172e-5
allele num: 84049
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2248T>G
  hgvsp: ENSP00000364927.3:p.Phe750Val
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2602T>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2248T>G
  hgvsp: ENSP00000364874.1:p.Phe750Val
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.437T>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2248T>G
  hgvsp: ENSP00000325333.7:p.Phe750Val
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4905T>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2416T>G
  hgvsp: ENSP00000364847.2:p.Phe806Val
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
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genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32048
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15847
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3810
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 857
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43757
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe806Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

X-51644942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644942
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644942
    reference: chr 0
allele count: 1
allele frequency: 1.201331074830913e-5
allele num: 83241
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2253C>T
  hgvsp: ENST00000326587.7:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2253C>T
  hgvsp: ENST00000375772.3:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2421C>T
  hgvsp: ENST00000375695.2:c.2421C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4910C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2253C>T
  hgvsp: ENST00000375722.1:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2607C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.442C>T
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15396
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3644
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala807Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

X-51644943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644943
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644943
    reference: chr 0
allele count: 2
allele frequency: 2.407752964545837e-5
allele num: 83065
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2254G>A
  hgvsp: ENSP00000364927.3:p.Gly752Ser
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2254G>A
  hgvsp: ENSP00000325333.7:p.Gly752Ser
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.443G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4911G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2254G>A
  hgvsp: ENSP00000364874.1:p.Gly752Ser
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2422G>A
  hgvsp: ENSP00000364847.2:p.Gly808Ser
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2608G>A
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly808Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

X-51644943-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644943
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644943
    reference: chr 0
allele count: 1
allele frequency: 1.203876482272919e-5
allele num: 83065
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2254G>T
  hgvsp: ENSP00000325333.7:p.Gly752Cys
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4911G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.443G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2254G>T
  hgvsp: ENSP00000364927.3:p.Gly752Cys
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2608G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2254G>T
  hgvsp: ENSP00000364874.1:p.Gly752Cys
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2422G>T
  hgvsp: ENSP00000364847.2:p.Gly808Cys
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30963
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly808Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-51644949-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644949
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644949
    reference: chr 0
allele count: 1
allele frequency: 1.217463293481702e-5
allele num: 82138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.449A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4917A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2260A>G
  hgvsp: ENSP00000364874.1:p.Ile754Val
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2428A>G
  hgvsp: ENSP00000364847.2:p.Ile810Val
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2614A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2260A>G
  hgvsp: ENSP00000325333.7:p.Ile754Val
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2260A>G
  hgvsp: ENSP00000364927.3:p.Ile754Val
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40865
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile810Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-51644952-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644952
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644952
    reference: chr 0
allele count: 1
allele frequency: 1.226677788545283e-5
allele num: 81521
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2263A>G
  hgvsp: ENSP00000364874.1:p.Ile755Val
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2617A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2263A>G
  hgvsp: ENSP00000325333.7:p.Ile755Val
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2431A>G
  hgvsp: ENSP00000364847.2:p.Ile811Val
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4920A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.452A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2263A>G
  hgvsp: ENSP00000364927.3:p.Ile755Val
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile811Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS

X-51644967-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644967
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644967
    reference: chr 0
allele count: 1
allele frequency: 1.284455519305366e-5
allele num: 77854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4935A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2278A>G
  hgvsp: ENSP00000364874.1:p.Thr760Ala
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.467A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2278A>G
  hgvsp: ENSP00000364927.3:p.Thr760Ala
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2278A>G
  hgvsp: ENSP00000325333.7:p.Thr760Ala
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2446A>G
  hgvsp: ENSP00000364847.2:p.Thr816Ala
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2632A>G
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr816Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-51644984-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644984
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644984
    reference: chr 0
allele count: 4
allele frequency: 5.488775454196169e-5
allele num: 72876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.484C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2463C>T
  hgvsp: ENST00000375695.2:c.2463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2649C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2295C>T
  hgvsp: ENST00000375722.1:c.2295C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2295C>T
  hgvsp: ENST00000326587.7:c.2295C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2295C>T
  hgvsp: ENST00000375772.3:c.2295C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4952C>T
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19523
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe821Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

X-51644985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644985
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644985
    reference: chr 0
allele count: 12
allele frequency: 1.655218074981379e-4
allele num: 72498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2650G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4953G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2296G>A
  hgvsp: ENSP00000325333.7:p.Ala766Thr
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2464G>A
  hgvsp: ENSP00000364847.2:p.Ala822Thr
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2296G>A
  hgvsp: ENSP00000364927.3:p.Ala766Thr
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2296G>A
  hgvsp: ENSP00000364874.1:p.Ala766Thr
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.485G>A
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11038
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20835
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.75e1
  variant carriers: 2
hgvs: p.Ala822Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

X-51644996-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051644996
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051644996
    reference: chr 0
allele count: 104
allele frequency: 1.503715913362829e-3
allele num: 69162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.496T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2307T>C
  hgvsp: ENST00000375772.3:c.2307T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2307T>C
  hgvsp: ENST00000375722.1:c.2307T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2661T>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2307T>C
  hgvsp: ENST00000326587.7:c.2307T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2475T>C
  hgvsp: ENST00000375695.2:c.2475T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4964T>C
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15288
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18707
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22137
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Phe825Phe
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

X-51645003-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051645003
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051645004
    reference: chr 0
allele count: 1
allele frequency: 1.473144574408532e-5
allele num: 67882
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4973dupT
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.505dupT
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2316dupT
  hgvsp: ENSP00000364927.3:p.Gly773TrpfsTer6
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2316dupT
  hgvsp: ENSP00000364874.1:p.Gly773TrpfsTer6
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2670dupT
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2484dupT
  hgvsp: ENSP00000364847.2:p.Gly829TrpfsTer6
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2316dupT
  hgvsp: ENSP00000325333.7:p.Gly773TrpfsTer6
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18258
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly829TrpfsTer6
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

X-51645014-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051645014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051645014
    reference: chr 0
allele count: 1
allele frequency: 1.543471885659603e-5
allele num: 64789
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2493C>T
  hgvsp: ENST00000375695.2:c.2493C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4982C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2325C>T
  hgvsp: ENST00000375722.1:c.2325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2325C>T
  hgvsp: ENST00000375772.3:c.2325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2325C>T
  hgvsp: ENST00000326587.7:c.2325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.514C>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2679C>T
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15918
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25060
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe831Phe
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

X-51645023-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051645023
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051645023
    reference: chr 0
allele count: 1
allele frequency: 1.607872142007267e-5
allele num: 62194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2334G>C
  hgvsp: ENSP00000364874.1:p.Glu778Asp
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2334G>C
  hgvsp: ENSP00000325333.7:p.Glu778Asp
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2502G>C
  hgvsp: ENSP00000364847.2:p.Glu834Asp
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2334G>C
  hgvsp: ENSP00000364927.3:p.Glu778Asp
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.523G>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2688G>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4991G>C
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14396
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26086
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu834Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS

X-51645025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051645025
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051645025
    reference: chr 0
allele count: 1
allele frequency: 1.62348204428859e-5
allele num: 61596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.2336G>A
  hgvsp: ENST00000375722.1:c.2336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.4993G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.525G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: stop_retained_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.2504G>A
  hgvsp: ENST00000375695.2:c.2504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.2336G>A
  hgvsp: ENST00000375772.3:c.2336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2690G>A
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.2336G>A
  hgvsp: ENST00000326587.7:c.2336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ter835Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

X-51645033-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051645033
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051645033
    reference: chr 0
allele count: 1
allele frequency: 1.682708487581611e-5
allele num: 59428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.*7G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2698G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.5001G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.*7G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.*7G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.*7G>T
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.533G>T
  variant of: http://identifiers.org/hgnc/6813
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 1
hgvs: c.*7G>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-51645043-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051645043
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051645043
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 56574
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.*8+9A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2699+9A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.543A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.*8+9A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.5011A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.*8+9A>G
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.*8+9A>G
  variant of: http://identifiers.org/hgnc/6813
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16264
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

X-51645065-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051645065
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051645065
    reference: chr 0
allele count: 6734
allele frequency: 1.411177937509168e-1
allele num: 47719
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000325333
  ensembl transcript: ENST00000326587
  gene symbol: MAGED1
  hgvsc: ENST00000326587.7:c.*8+31G>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000485420
  gene symbol: MAGED1
  hgvsc: ENST00000485420.1:n.2699+31G>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000494718
  gene symbol: MAGED1
  hgvsc: ENST00000494718.1:n.5033G>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364847
  ensembl transcript: ENST00000375695
  gene symbol: MAGED1
  hgvsc: ENST00000375695.2:c.*8+31G>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364927
  ensembl transcript: ENST00000375772
  gene symbol: MAGED1
  hgvsc: ENST00000375772.3:c.*8+31G>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179222
  ensembl protein: ENSP00000364874
  ensembl transcript: ENST00000375722
  gene symbol: MAGED1
  hgvsc: ENST00000375722.1:c.*8+31G>C
  variant of: http://identifiers.org/hgnc/6813
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179222
  ensembl transcript: ENST00000473931
  gene symbol: MAGED1
  hgvsc: ENST00000473931.1:n.565G>C
  variant of: http://identifiers.org/hgnc/6813
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19662
  bin: 7.5e0
  variant carriers: 2691
genotype depth: GenotypeDepth
  all individuals: 13474
  bin: 1.25e1
  variant carriers: 2310
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.25e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 1.75e1
  variant carriers: 1579
genotype depth: GenotypeDepth
  all individuals: 11337
  bin: 2.5e0
  variant carriers: 651
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.75e1
  variant carriers: 318
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 2.75e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 2.25e1
  variant carriers: 824
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 4.75e1
  variant carriers: 200
genotype quality: GenotypeQuality
  all individuals: 4794
  bin: 1.75e1
  variant carriers: 905
genotype quality: GenotypeQuality
  all individuals: 5623
  bin: 9.75e1
  variant carriers: 4840
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 2.5e0
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 13789
  bin: 2.25e1
  variant carriers: 877
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 3.75e1
  variant carriers: 322
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 2.75e1
  variant carriers: 329
num of homozygotes: 379
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-51934838-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934838
    reference: chr 0
allele count: 7
allele frequency: 1.605504587155963e-2
allele num: 436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2653C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2152C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2773+13C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2287C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-371C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2145C>G
  hgvsp: ENST00000416960.1:c.2145C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.366+13C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.2097C>G
  hgvsp: ENST00000375626.3:c.2097C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2247C>G
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18655
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly699Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

X-51934838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934838
    reference: chr 0
allele count: 2
allele frequency: 4.587155963302753e-3
allele num: 436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2145C>T
  hgvsp: ENST00000416960.1:c.2145C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2653C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2773+13C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.366+13C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2152C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.2097C>T
  hgvsp: ENST00000375626.3:c.2097C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-371C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2287C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2247C>T
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly699Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP

X-51934839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934839
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934839
    reference: chr 0
allele count: 1
allele frequency: 2.257336343115124e-3
allele num: 443
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.2098G>A
  hgvsp: ENSP00000364777.3:p.Val700Ile
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2654G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2248G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.366+14G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2153G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2146G>A
  hgvsp: ENSP00000399147.1:p.Val716Ile
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2773+14G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2288G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-370G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16821
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val700Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-51934866-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934866
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934866
    reference: chr 0
allele count: 1
allele frequency: 1.618122977346278e-3
allele num: 618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.366+41A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2315A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2773+41A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2275A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2180A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.2125A>G
  hgvsp: ENSP00000364777.3:p.Ser709Gly
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2681A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-343A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2173A>G
  hgvsp: ENSP00000399147.1:p.Ser725Gly
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26419
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24057
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser709Gly
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-51934875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934875
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934875
    reference: chr 0
allele count: 2
allele frequency: 2.781641168289291e-3
allele num: 719
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2284G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.366+50G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.2134G>A
  hgvsp: ENSP00000364777.3:p.Val712Ile
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2182G>A
  hgvsp: ENSP00000399147.1:p.Val728Ile
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2690G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-334G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2324G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2773+50G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2189G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29165
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val712Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

X-51934909-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934909
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934909
    reference: chr 0
allele count: 1
allele frequency: 7.8064012490242e-4
allele num: 1281
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2216G>A
  hgvsp: ENSP00000399147.1:p.Arg739Gln
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2724G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.2168G>A
  hgvsp: ENSP00000364777.3:p.Arg723Gln
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2774-31G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2318G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2223G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.367-31G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2358G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-300G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31480
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg723Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-51934924-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934924
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934924
    reference: chr 0
allele count: 7
allele frequency: 4.847645429362881e-3
allele num: 1444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-285C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2373C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.2183C>G
  hgvsp: ENSP00000364777.3:p.Ala728Gly
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2238C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2333C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2739C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.367-16C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2231C>G
  hgvsp: ENSP00000399147.1:p.Ala744Gly
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2774-16C>G
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33401
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala728Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-51934936-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934936
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934936
    reference: chr 0
allele count: 2
allele frequency: 8.928571428571428e-4
allele num: 2240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2243C>G
  hgvsp: ENSP00000399147.1:p.Ala748Gly
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2250C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.2195C>G
  hgvsp: ENSP00000364777.3:p.Ala732Gly
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-273C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.367-4C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2774-4C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2345C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2385C>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2751C>G
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala732Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-51934938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934938
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934938
    reference: chr 0
allele count: 1
allele frequency: 3.739715781600598e-4
allele num: 2674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2387A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2252A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.2197A>G
  hgvsp: ENSP00000364777.3:p.Ser733Gly
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2774-2A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-271A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2347A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.367-2A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2245A>G
  hgvsp: ENSP00000399147.1:p.Ser749Gly
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2753A>G
  variant of: http://identifiers.org/hgnc/23793
canonical: false
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: n.2774-2A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-51934979-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934979
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934979
    reference: chr 0
allele count: 2
allele frequency: 1.514004542013626e-4
allele num: 13210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-230T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+22T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+10T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+22T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+10T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+22T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+22T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+10T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+22T>C
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21544
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26581
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

X-51934987-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934987
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934987
    reference: chr 0
allele count: 1
allele frequency: 5.803493703209332e-5
allele num: 17231
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+18T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+30T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+18T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+18T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+30T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+30T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-222T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+30T>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+30T>C
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6547
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

X-51934989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051934989
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051934989
    reference: chr 0
allele count: 1
allele frequency: 5.380393844829442e-5
allele num: 18586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+32C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+32C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+32C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-220C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+32C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+20C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+32C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+20C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+20C>T
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21350
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
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genotype depth: GenotypeDepth
  all individuals: 35
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genotype depth: GenotypeDepth
  all individuals: 298
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genotype depth: GenotypeDepth
  all individuals: 1905
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
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genotype quality: GenotypeQuality
  all individuals: 1164
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genotype quality: GenotypeQuality
  all individuals: 227
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genotype quality: GenotypeQuality
  all individuals: 540
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genotype quality: GenotypeQuality
  all individuals: 63
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genotype quality: GenotypeQuality
  all individuals: 954
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genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

X-51935000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935000
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935000
    reference: chr 0
allele count: 5
allele frequency: 1.844201829448215e-4
allele num: 27112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+43C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+43C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+43C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+43C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+31C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+31C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+43C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+31C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-209C>T
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28895
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1185
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genotype quality: GenotypeQuality
  all individuals: 528
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genotype quality: GenotypeQuality
  all individuals: 9493
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genotype quality: GenotypeQuality
  all individuals: 261
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

X-51935001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935001
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935001
    reference: chr 0
allele count: 4
allele frequency: 1.302719426803452e-4
allele num: 30705
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+32G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+44G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+44G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+32G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-208G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+44G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+44G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+44G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+32G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 650
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11577
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genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-51935002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935002
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935002
    reference: chr 0
allele count: 10
allele frequency: 3.147821707378494e-4
allele num: 31768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+45G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+45G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+45G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+45G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-207G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+33G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+33G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+45G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+33G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29277
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-51935005-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935005
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935005
    reference: chr 0
allele count: 1
allele frequency: 2.719460459044926e-5
allele num: 36772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+48G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+48G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+48G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+36G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+48G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+36G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+36G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+48G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-204G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8638
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

X-51935005-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935005
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935005
    reference: chr 0
allele count: 2
allele frequency: 5.438920918089851e-5
allele num: 36772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+36G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+36G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+48G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-204G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+48G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+48G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+36G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+48G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+48G>T
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15150
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

X-51935006-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935006
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935006
    reference: chr 0
allele count: 1
allele frequency: 2.633034045130203e-5
allele num: 37979
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+49G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+37G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+37G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+49G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+49G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+49G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+49G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-203G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+37G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27076
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-51935006-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935006
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935006
    reference: chr 0
allele count: 3
allele frequency: 7.89910213539061e-5
allele num: 37979
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+49G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+37G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+49G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+37G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-203G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+37G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+49G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+49G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+49G>C
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28693
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15627
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-51935008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935008
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935008
    reference: chr 0
allele count: 2
allele frequency: 5.032459362890645e-5
allele num: 39742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-201G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+51G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+39G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+51G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+51G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+51G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+39G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+51G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+39G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 414
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-51935008-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935008
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935008
    reference: chr 0
allele count: 1
allele frequency: 2.516229681445322e-5
allele num: 39742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+51G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+51G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+39G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+51G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+39G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+39G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+51G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+51G>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-201G>T
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7386
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-51935010-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935010
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935010
    reference: chr 0
allele count: 1
allele frequency: 2.434215330688153e-5
allele num: 41081
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2406+53T>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2271+53T>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.384+53T>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2366+53T>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2784+41T>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2264+53T>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*8+41T>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2803+41T>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-199T>G
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16404
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28176
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

X-51935105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935105
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935105
    reference: chr 0
allele count: 9
allele frequency: 6.389776357827476e-4
allele num: 14085
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2804-48C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2265-48C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.385-48C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2785-48C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2272-48C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-104C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2407-48C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*9-48C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2367-48C>T
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30432
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 9.75e1
  variant carriers: 7
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-51935117-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935117
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935117
    reference: chr 0
allele count: 1
allele frequency: 7.40905386382159e-5
allele num: 13497
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2407-36C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2265-36C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2367-36C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2272-36C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2804-36C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-92C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.385-36C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*9-36C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2785-36C>T
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25755
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-51935118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935118
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935118
    reference: chr 0
allele count: 2
allele frequency: 1.477541371158392e-4
allele num: 13536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2265-35G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-91G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2407-35G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2785-35G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.385-35G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2272-35G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2804-35G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*9-35G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2367-35G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4580
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26151
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-51935118-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935118
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935118
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2272-35G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2804-35G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.385-35G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2785-35G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2407-35G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2265-35G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2367-35G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*9-35G>C
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-91G>C
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-51935149-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935149
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935149
    reference: chr 0
allele count: 1
allele frequency: 7.680491551459293e-5
allele num: 13020
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*9-4A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.385-4A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2804-4A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2265-4A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2272-4A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2407-4A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-60A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2785-4A>G
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2367-4A>G
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7527
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
hgvs: c.*9-4A>G
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-51935158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935158
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 12749
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2412G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*14G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-51G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2277G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.2270G>A
  hgvsp: ENSP00000399147.1:p.Arg757His
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2372G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2790G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.390G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2809G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31264
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg757His
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

X-51935173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935173
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935173
    reference: chr 0
allele count: 1
allele frequency: 8.33541718763024e-5
allele num: 11997
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2292C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*29C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2427C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2387C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000479281
  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2824C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497416
  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-36C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2805C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000399147
  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
  hgvsc: ENST00000416960.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000497348
  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.405C>T
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6738
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

X-51935174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24051935174
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24051935174
    reference: chr 0
allele count: 14
allele frequency: 1.176174073762917e-3
allele num: 11903
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000459685
  gene symbol: MAGED4
  hgvsc: ENST00000459685.1:n.2428G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000498483
  gene symbol: MAGED4
  hgvsc: ENST00000498483.1:n.2293G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154545
  ensembl transcript: ENST00000477634
  gene symbol: MAGED4
  hgvsc: ENST00000477634.1:n.2806G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000154545
  ensembl protein: ENSP00000364777
  ensembl transcript: ENST00000375626
  gene symbol: MAGED4
  hgvsc: ENST00000375626.3:c.*30G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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  ensembl transcript: ENST00000416960
  gene symbol: MAGED4
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  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
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  gene symbol: MAGED4
  hgvsc: ENST00000479281.1:n.2825G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
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  gene symbol: MAGED4
  hgvsc: ENST00000497348.1:n.406G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154545
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  gene symbol: MAGED4
  hgvsc: ENST00000497416.1:n.305-35G>A
  variant of: http://identifiers.org/hgnc/23793
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl transcript: ENST00000471932
  gene symbol: MAGED4
  hgvsc: ENST00000471932.1:n.2388G>A
  variant of: http://identifiers.org/hgnc/23793
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-52079652-A-T
type: Variant
location: Region
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allele count: 0
allele frequency: 0.0e0
allele num: 10
alternate allele: T
canonical: false
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
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  allele num: 0
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population: Latino
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population: South Asian
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population: Other
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population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

X-52079763-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24052079763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24052079763
    reference: chr 0
allele count: 2
allele frequency: 2.0e-1
allele num: 10
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
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population: Latino
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population: European (Non-Finnish)
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population: European (Finnish)
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population: African
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

X-52079770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24052079770
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24052079770
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 8
alternate allele: T
canonical: false
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
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population: Other
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population: South Asian
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population: East Asian
  type: Population
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  allele num: 2
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population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-52079820-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24052079820
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24052079820
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 18
alternate allele: T
canonical: false
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
reference allele: A

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 455
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.527805864509606e-5
allele num: 39560
num of homozygotes: 0

African
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allele count: 0
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allele num: 7556
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3603
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 4.086e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.301e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.913999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.085635e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 5.14e0

GenotypeQuality
all individuals: 326
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3733
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7805
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 495
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6123
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.973164956590371e-4
allele num: 5068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.126103e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.8e-2

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 2.655e1

GenotypeQuality
all individuals: 962
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 642
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1736
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 11422
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1968
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 511
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32199
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2789
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.702562896778744e-5
allele num: 42530
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.376936316695353e-3
allele num: 8715
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.803426510369702e-4
allele num: 5545
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 242
allele frequency: 3.039055632299385e-2
allele num: 7963
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.975e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.165383e6

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.602e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeQuality
all individuals: 419
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 32453
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5689
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 509
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3857
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.324878776575905e-5
allele num: 42896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8751
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.046e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

QD
type: SiteQuality
SIO_000300: 1.968e1

DP
type: SiteQuality
SIO_000300: 1.175113e6

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

FS
type: SiteQuality
SIO_000300: 5.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.006e0

GenotypeQuality
all individuals: 270
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8843
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3941
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.584786053882726e-4
allele num: 6310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8101
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43739
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.68e-1

FS
type: SiteQuality
SIO_000300: 1.6804e1

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 1.204379e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.153e1

VQSLOD
type: SiteQuality
SIO_000300: -2.862e0

GenotypeQuality
all individuals: 845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9512
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6343
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.26808800181447e-5
allele num: 44090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8135
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8879
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6349
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.714e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.137e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

DP
type: SiteQuality
SIO_000300: 1.215979e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.04e-1

GenotypeQuality
all individuals: 1308
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 304
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1014
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1435
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 551
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6415
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 4.451269724688968e-4
allele num: 44931
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.216397031991242e-4
allele num: 8221
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4059
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

DP
type: SiteQuality
SIO_000300: 1.255223e6

QD
type: SiteQuality
SIO_000300: 1.452e1

GenotypeQuality
all individuals: 102
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 911
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 166
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 482
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 3.680981595092025e-3
allele num: 4075
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.652179697547563e-5
allele num: 45098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.263661e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.87e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 2.189e1

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

FS
type: SiteQuality
SIO_000300: 2.518e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

GenotypeQuality
all individuals: 296
bin: 1.75e1
variant carriers: 135

GenotypeQuality
all individuals: 5675
bin: 2.25e1
variant carriers: 162

GenotypeQuality
all individuals: 749
bin: 7.75e1
variant carriers: 307

GenotypeQuality
all individuals: 1291
bin: 5.25e1
variant carriers: 469

GenotypeQuality
all individuals: 259
bin: 2.5e0
variant carriers: 94

GenotypeQuality
all individuals: 489
bin: 8.25e1
variant carriers: 267

GenotypeQuality
all individuals: 1340
bin: 3.75e1
variant carriers: 305

GenotypeQuality
all individuals: 915
bin: 5.75e1
variant carriers: 249

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 99

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 166

GenotypeQuality
all individuals: 764
bin: 7.25e1
variant carriers: 187

Latino
type: Population
allele count: 605
allele frequency: 6.693958840451428e-2
allele num: 9038
num of homozygotes: 32

European (Finnish)
type: Population
allele count: 850
allele frequency: 2.035928143712575e-1
allele num: 4175
num of homozygotes: 47

South Asian
type: Population
allele count: 1168
allele frequency: 1.522220774143099e-1
allele num: 7673
num of homozygotes: 38

African
type: Population
allele count: 452
allele frequency: 5.456301303718011e-2
allele num: 8284
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 8301
allele frequency: 1.815378559244194e-1
allele num: 45726
num of homozygotes: 478

East Asian
type: Population
allele count: 268
allele frequency: 4.143475572047001e-2
allele num: 6468
num of homozygotes: 6

Other
type: Population
allele count: 93
allele frequency: 1.631578947368421e-1
allele num: 570
num of homozygotes: 7

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 2.002e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 1.142e0

DP
type: SiteQuality
SIO_000300: 1.514787e6

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.528999999999999e-1

GenotypeQuality
all individuals: 641
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6553
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.131241874640353e-5
allele num: 46921
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9167
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.721e0

MQ
type: SiteQuality
SIO_000300: 5.839e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.232e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

DP
type: SiteQuality
SIO_000300: 1.401777e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

GenotypeQuality
all individuals: 956
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4337
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.127976507139361e-5
allele num: 46993
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8383
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.98e-1

DP
type: SiteQuality
SIO_000300: 1.410698e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.113e0

QD
type: SiteQuality
SIO_000300: 6.67e0

VQSLOD
type: SiteQuality
SIO_000300: -8.175e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.484e0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47033
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.102695655830775e-5
allele num: 47558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4431
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8447
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.897e0

DP
type: SiteQuality
SIO_000300: 1.455067e6

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8451
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9475
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4449
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.1000021000021e-5
allele num: 47619
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.118e0

VQSLOD
type: SiteQuality
SIO_000300: -1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

QD
type: SiteQuality
SIO_000300: 6.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.65e-1

DP
type: SiteQuality
SIO_000300: 1.458362e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096128450751462e-5
allele num: 47707
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9267
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4455
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9727
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.61e-2

QD
type: SiteQuality
SIO_000300: 3.383e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 1.476061e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 853
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4451
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.618122977346278e-3
allele num: 618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9265
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47695
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.528e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.424e0

DP
type: SiteQuality
SIO_000300: 1.476047e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

FS
type: SiteQuality
SIO_000300: 2.007e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.218e1

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
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GenotypeQuality
all individuals: 351
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GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 359
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GenotypeQuality
all individuals: 321
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GenotypeQuality
all individuals: 1017
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variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8431
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47511
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.469403e6

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

VQSLOD
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 4.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.24e-1

QD
type: SiteQuality
SIO_000300: 9.42e0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 284
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GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4330
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GenotypeQuality
all individuals: 1023
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8411
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6599
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9595
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.11144190367602e-5
allele num: 47361
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9219
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4409
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.471e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

FS
type: SiteQuality
SIO_000300: 2.336e0

MQ
type: SiteQuality
SIO_000300: 5.765e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -9.46e-1

DP
type: SiteQuality
SIO_000300: 1.462081e6

QD
type: SiteQuality
SIO_000300: 1.682e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 47517
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9535
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6587
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.355932203389831e-5
allele num: 47200
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.31e-2

FS
type: SiteQuality
SIO_000300: 3.62e0

VQSLOD
type: SiteQuality
SIO_000300: -5.45e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQ
type: SiteQuality
SIO_000300: 5.908e1

DP
type: SiteQuality
SIO_000300: 1.454243e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.191753068764152e-4
allele num: 8391
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.366453036798098e-5
allele num: 47122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9187
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.787e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.452592e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.99e-2

FS
type: SiteQuality
SIO_000300: 1.293e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4085
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GenotypeQuality
all individuals: 38
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.132514447785384e-5
allele num: 46893
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4335
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9165
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8369
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9431
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.186e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 6.02e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: -9.261e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.17e-2

DP
type: SiteQuality
SIO_000300: 1.438417e6

QD
type: SiteQuality
SIO_000300: 3.326e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 458
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GenotypeQuality
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GenotypeQuality
all individuals: 635
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 1015
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GenotypeQuality
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GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.200624324648817e-4
allele num: 8329
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6539
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9111
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.023e0

DP
type: SiteQuality
SIO_000300: 1.416898e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.567e0

MQ
type: SiteQuality
SIO_000300: 5.651e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.205e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.121e-1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8299
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.166753336800139e-5
allele num: 46152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.400071e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

QD
type: SiteQuality
SIO_000300: 1.552e1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 4.263e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1008
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8977
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4171
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.186987424822307e-5
allele num: 45725
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6457
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9057
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.328e0

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.284e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.38045e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

GenotypeQuality
all individuals: 1007
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.107665042091272e-4
allele num: 9028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4159
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6451
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8257
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.192069094017843e-5
allele num: 45619
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: -2.229e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

DP
type: SiteQuality
SIO_000300: 1.376092e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

FS
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 2.12e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

GenotypeQuality
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 124
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variant carriers: 0

GenotypeQuality
all individuals: 436
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.192069094017843e-5
allele num: 45619
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4159
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6451
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8257
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.376092e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.229e0

FS
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 2.12e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1102
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variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.215870061379601e-5
allele num: 45129
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8213
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.507e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.034e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

QD
type: SiteQuality
SIO_000300: 7.01e0

MQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.347291e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4041
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8185
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.23234217340834e-5
allele num: 44796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6347
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8775
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.875e1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.329773e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42777
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.2531328320802e-4
allele num: 7980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6163
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3809
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.232816e6

FS
type: SiteQuality
SIO_000300: 8.414e0

VQSLOD
type: SiteQuality
SIO_000300: -3.829e-1

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.409e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3551
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7847
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7199
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.958423581547041e-5
allele num: 40167
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.372e1

DP
type: SiteQuality
SIO_000300: 1.125026e6

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
all individuals: 407
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GenotypeQuality
all individuals: 113
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 2.250956656579046e-4
allele num: 39983
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.403902849922785e-4
allele num: 7123
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3539
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.561803509670808e-4
allele num: 7807
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.534e0

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 2.076e0

QD
type: SiteQuality
SIO_000300: 1.482e1

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.118653e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.67e-1

GenotypeQuality
all individuals: 1521
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 21920
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 9.75e1
variant carriers: 83

GenotypeQuality
all individuals: 2143
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2080
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38333
num of homozygotes: 0

African
type: Population
allele count: 97
allele frequency: 1.289722111421353e-2
allele num: 7521
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 9.488952148569879e-4
allele num: 7377
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5625
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.538e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.11e-2

DP
type: SiteQuality
SIO_000300: 1.057758e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

FS
type: SiteQuality
SIO_000300: 5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

GenotypeQuality
all individuals: 2030
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23474
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.652379184128163e-5
allele num: 37702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.98e0

MQ
type: SiteQuality
SIO_000300: 6.046e1

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.49e-1

DP
type: SiteQuality
SIO_000300: 1.037194e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

GenotypeQuality
all individuals: 464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2543
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 451
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5345
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.762354631087539e-5
allele num: 36201
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.333e0

FS
type: SiteQuality
SIO_000300: 1.875e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

QD
type: SiteQuality
SIO_000300: 1.14e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.043e0

MQRankSum
type: SiteQuality
SIO_000300: -4.63e-1

DP
type: SiteQuality
SIO_000300: 9.82627e5

VQSLOD
type: SiteQuality
SIO_000300: -1.078e-1

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2973
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.866643733516798e-5
allele num: 34884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 427
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7101
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6389
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.867e1

DP
type: SiteQuality
SIO_000300: 9.31912e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 316
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1562
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.888170055452865e-5
allele num: 34624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2941
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6297
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.785e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.47e-1

DP
type: SiteQuality
SIO_000300: 9.20114e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 6.952e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 2.64e1

GenotypeQuality
all individuals: 900
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 236
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14284
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33567
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2843
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4661
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.987676406281057e-4
allele num: 5031
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.448e0

DP
type: SiteQuality
SIO_000300: 8.80287e5

QD
type: SiteQuality
SIO_000300: 8.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.397e0

VQSLOD
type: SiteQuality
SIO_000300: 8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 8452
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 323
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4851
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6807
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4098
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 8.1469e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.325e0

QD
type: SiteQuality
SIO_000300: 2.458e1

GenotypeQuality
all individuals: 348
bin: 7.75e1
variant carriers: 99

GenotypeQuality
all individuals: 3636
bin: 3.25e1
variant carriers: 466

GenotypeQuality
all individuals: 11638
bin: 7.5e0
variant carriers: 337

GenotypeQuality
all individuals: 4567
bin: 1.25e1
variant carriers: 413

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 113

GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 88

GenotypeQuality
all individuals: 821
bin: 4.25e1
variant carriers: 148

GenotypeQuality
all individuals: 3620
bin: 6.25e1
variant carriers: 106

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 92

GenotypeQuality
all individuals: 279
bin: 8.25e1
variant carriers: 117

East Asian
type: Population
allele count: 551
allele frequency: 1.308477796247922e-1
allele num: 4211
num of homozygotes: 25

Latino
type: Population
allele count: 225
allele frequency: 5.243532975996271e-2
allele num: 4291
num of homozygotes: 8

African
type: Population
allele count: 872
allele frequency: 1.404639175257732e-1
allele num: 6208
num of homozygotes: 58

Other
type: Population
allele count: 39
allele frequency: 1.308724832214765e-1
allele num: 298
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 4308
allele frequency: 1.563872654009511e-1
allele num: 27547
num of homozygotes: 248

South Asian
type: Population
allele count: 322
allele frequency: 1.096730245231608e-1
allele num: 2936
num of homozygotes: 16

European (Finnish)
type: Population
allele count: 417
allele frequency: 1.871633752244165e-1
allele num: 2228
num of homozygotes: 22

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.415e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 7.577e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.56e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.796e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

GenotypeQuality
all individuals: 163
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2461
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16192
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.0e-1
allele num: 70
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 5.13e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.355e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.81e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

DP
type: SiteQuality
SIO_000300: 5.1339e4

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16192
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2461
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 7.407407407407407e-2
allele num: 27
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 3.22e-1

MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.98e-1

MQ
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SIO_000300: 2.2e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 5.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.1339e4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 19
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 29
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 301
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.408450704225352e-2
allele num: 71
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

InbreedingCoeff
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SIO_000300: -1.08e-1

BaseQRankSum
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MQ
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VQSLOD
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SIO_000300: -4.731e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.98e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 113
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.570694087403599e-3
allele num: 389
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
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SIO_000300: 7.5856e4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.043e-1

BaseQRankSum
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SIO_000300: -1.663e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

QD
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.0e-1
allele num: 5
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.252252252252252e-3
allele num: 444
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 8.7538e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.028e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.122e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 713
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

African
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allele count: 1
allele frequency: 5.0e-3
allele num: 200
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.213e1

VQSLOD
type: SiteQuality
SIO_000300: -4.464e0

DP
type: SiteQuality
SIO_000300: 1.23154e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.58e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.194e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
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SIO_000300: 3.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

QD
type: SiteQuality
SIO_000300: 3.1e0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 0.0e0
allele num: 223
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 3.225806451612903e-2
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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DP
type: SiteQuality
SIO_000300: 1.24599e5

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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African
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.69e-2

VQSLOD
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FS
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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South Asian
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Latino
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East Asian
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MQRankSum
type: SiteQuality
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MQ
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DP
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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Other
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QD
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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BaseQRankSum
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.048e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.324500232450023e-4
allele num: 4302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 175
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 835
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7995
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1699
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1157
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 3.05e0

MQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.96e0

MQ
type: SiteQuality
SIO_000300: 2.336e1

DP
type: SiteQuality
SIO_000300: 4.56774e5

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.18435998252512e-4
allele num: 4578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 183
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1179
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1849
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 985
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

QD
type: SiteQuality
SIO_000300: 1.008e1

FS
type: SiteQuality
SIO_000300: 1.544e0

MQ
type: SiteQuality
SIO_000300: 2.297e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.181e0

VQSLOD
type: SiteQuality
SIO_000300: -6.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.022e0

DP
type: SiteQuality
SIO_000300: 4.77354e5

GenotypeQuality
all individuals: 207
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 5.382131324004305e-4
allele num: 1858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3073
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.536885245901639e-3
allele num: 1952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5431
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.714858818083629e-5
allele num: 12962
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

QD
type: SiteQuality
SIO_000300: 3.2e0

DP
type: SiteQuality
SIO_000300: 5.922e5

VQSLOD
type: SiteQuality
SIO_000300: -6.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.3e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

GenotypeQuality
all individuals: 1497
bin: 3.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2231
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15027
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 7.018775223723461e-4
allele num: 5699
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1695
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 249
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.4e0

QD
type: SiteQuality
SIO_000300: 9.01e0

MQ
type: SiteQuality
SIO_000300: 2.3e1

MQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

DP
type: SiteQuality
SIO_000300: 6.27832e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

FS
type: SiteQuality
SIO_000300: 1.522e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.62e-1

GenotypeQuality
all individuals: 231
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 187
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 2347
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 10
allele frequency: 4.024144869215292e-3
allele num: 2485
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1737
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2351
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5769
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.52e0

FS
type: SiteQuality
SIO_000300: 4.579e0

QD
type: SiteQuality
SIO_000300: 3.38e0

MQ
type: SiteQuality
SIO_000300: 2.3e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.3819e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

GenotypeQuality
all individuals: 313
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1771
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.228931223764934e-4
allele num: 3097
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1921
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

QD
type: SiteQuality
SIO_000300: 5.51e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.656e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.679e0

MQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

DP
type: SiteQuality
SIO_000300: 6.90882e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -4.845e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1921
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.360205831903945e-5
allele num: 18656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3097
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.401360544217687e-3
allele num: 294
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

QD
type: SiteQuality
SIO_000300: 5.51e0

DP
type: SiteQuality
SIO_000300: 6.90882e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.679e0

MQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.845e0

MQ
type: SiteQuality
SIO_000300: 2.656e1

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 780
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 299
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6133
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.178932104200114e-5
allele num: 19309
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -5.63e0

QD
type: SiteQuality
SIO_000300: 4.86e0

FS
type: SiteQuality
SIO_000300: 3.933e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

MQ
type: SiteQuality
SIO_000300: 2.388e1

DP
type: SiteQuality
SIO_000300: 7.01796e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 329
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1805
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GenotypeQuality
all individuals: 27076
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GenotypeQuality
all individuals: 2721
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GenotypeQuality
all individuals: 12994
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6133
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19309
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.079027355623101e-4
allele num: 3290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 299
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.44140625e-4
allele num: 4096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.933e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 4.86e0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 7.01796e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

MQ
type: SiteQuality
SIO_000300: 2.388e1

GenotypeQuality
all individuals: 498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13709
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20258
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.514657980456026e-4
allele num: 3070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3569
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6239
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.86e0

MQ
type: SiteQuality
SIO_000300: 2.347e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

QD
type: SiteQuality
SIO_000300: 4.53e0

FS
type: SiteQuality
SIO_000300: 6.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 7.20049e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

GenotypeQuality
all individuals: 1838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 795
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variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3569
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.936321453253036e-5
allele num: 20258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6239
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4266
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

DP
type: SiteQuality
SIO_000300: 7.20049e5

FS
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 4.53e0

VQSLOD
type: SiteQuality
SIO_000300: -5.86e0

MQ
type: SiteQuality
SIO_000300: 2.347e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 241
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variant carriers: 1

GenotypeQuality
all individuals: 1873
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.768717215069146e-5
allele num: 20970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3217
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 313
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3775
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.404e0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

FS
type: SiteQuality
SIO_000300: 2.294e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e0

VQSLOD
type: SiteQuality
SIO_000300: -1.017e1

MQ
type: SiteQuality
SIO_000300: 2.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

DP
type: SiteQuality
SIO_000300: 7.3625e5

GenotypeQuality
all individuals: 505
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
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variant carriers: 1

GenotypeQuality
all individuals: 8641
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1791
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 264
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GenotypeQuality
all individuals: 2248
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 599
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3417
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2001
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.276052743513399e-3
allele num: 7053
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.069999999999999e-2

FS
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.966e0

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

MQ
type: SiteQuality
SIO_000300: 2.272e1

DP
type: SiteQuality
SIO_000300: 3.53908e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 3.62e0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 368
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GenotypeQuality
all individuals: 636
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 520
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variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1933
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 289
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.487431206306708e-4
allele num: 6723
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 541
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.57e-2

QD
type: SiteQuality
SIO_000300: 2.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.158e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.475e0

DP
type: SiteQuality
SIO_000300: 3.54042e5

GenotypeQuality
all individuals: 3017
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6755
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 6.062443164595332e-4
allele num: 3299
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.497e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.55521e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

QD
type: SiteQuality
SIO_000300: 5.56e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6755
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1934
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3299
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.55521e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 5.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3246
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.846153846153846e-3
allele num: 260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6431
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.568e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 6.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

DP
type: SiteQuality
SIO_000300: 3.54798e5

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
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GenotypeQuality
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 1257
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GenotypeQuality
all individuals: 29468
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GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1783
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 129
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.49316e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.454e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.45e-2

QD
type: SiteQuality
SIO_000300: 6.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.64e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

GenotypeQuality
all individuals: 636
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28262
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5977
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.12369871402327e-4
allele num: 1633
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3045
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 253
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 457
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

QD
type: SiteQuality
SIO_000300: 2.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.26101e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.71e-2

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.273e0

GenotypeQuality
all individuals: 27792
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3030
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 541
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 442
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 320
bin: 6.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.684068710003368e-4
allele num: 5938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3024
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.98406374501992e-3
allele num: 251
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 7.425742574257425e-3
allele num: 1616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -4.604e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

DP
type: SiteQuality
SIO_000300: 3.2255e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

QD
type: SiteQuality
SIO_000300: 3.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.770000000000001e-2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.412e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.233e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.521e3

African
type: Population
allele count: 2
allele frequency: 5.0e-1
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.58e1

VQSLOD
type: SiteQuality
SIO_000300: -8.57e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 4.077e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.950000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.0673e4

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 1.1309e4

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

MQ
type: SiteQuality
SIO_000300: 5.516e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1