19-56756686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756686
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756686
    reference: chr 19
allele count: 3
allele frequency: 5.294366793731469e-5
allele num: 56664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20144G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21483G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20269G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20144G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.471C>T
  hgvsp: ENST00000600684.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20269G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20144G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21483G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21522G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10353
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly157Gly
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-56756687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756687
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756687
    reference: chr 19
allele count: 5
allele frequency: 8.708677326087714e-5
allele num: 57414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21484C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21523C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21484C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20270C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20145C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20145C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.472G>A
  hgvsp: ENSP00000470691.1:p.Val158Met
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20145C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20270C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11712
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val158Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

19-56756687-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756687
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756687
    reference: chr 19
allele count: 1
allele frequency: 1.741735465217543e-5
allele num: 57414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20270C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21523C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21484C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20145C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.472G>C
  hgvsp: ENSP00000470691.1:p.Val158Leu
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20270C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20145C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20145C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21484C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val158Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-56756698-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756698
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756698
    reference: chr 19
allele count: 1
allele frequency: 1.638914383112626e-5
allele num: 61016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20156C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21495C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.483G>T
  hgvsp: ENSP00000470691.1:p.Gln161His
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20156C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21534C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20281C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20281C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20156C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21495C>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12300
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln161His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

19-56756699-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756699
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756699
    reference: chr 19
allele count: 8
allele frequency: 1.316222441592629e-4
allele num: 60780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21496G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20157G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21535G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21496G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20282G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20157G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20157G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.484C>T
  hgvsp: ENSP00000470691.1:p.Arg162Trp
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20282G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg162Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-56756700-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756700
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756700
    reference: chr 19
allele count: 1
allele frequency: 1.614205004035513e-5
allele num: 61950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21536C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.485G>C
  hgvsp: ENSP00000470691.1:p.Arg162Pro
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20158C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20158C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21497C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20283C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20158C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20283C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21497C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg162Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-56756701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756701
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756701
    reference: chr 19
allele count: 4
allele frequency: 6.390797251957181e-5
allele num: 62590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.486G>A
  hgvsp: ENST00000600684.1:c.486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21498C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20159C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20284C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20159C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21498C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20159C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20284C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21537C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11199
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27621
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg162Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

19-56756702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756702
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756702
    reference: chr 19
allele count: 2
allele frequency: 3.177831447820008e-5
allele num: 62936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20160C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20285C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21499C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20160C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21499C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21538C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.487G>A
  hgvsp: ENSP00000470691.1:p.Ala163Thr
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20160C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20285C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11185
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala163Thr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-56756708-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756708
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756708
    reference: chr 19
allele count: 2
allele frequency: 3.076544425301501e-5
allele num: 65008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21505A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21544A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20166A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20166A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20291A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20291A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.493T>A
  hgvsp: ENSP00000470691.1:p.Ser165Thr
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21505A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20166A>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11329
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26575
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser165Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-56756713-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756713
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756713
    reference: chr 19
allele count: 3
allele frequency: 4.563848236833298e-5
allele num: 65734
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20296C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21510C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21549C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21510C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.498G>C
  hgvsp: ENST00000600684.1:c.498G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20171C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20296C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20171C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20171C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13002
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val166Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

19-56756716-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756716
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756716
    reference: chr 19
allele count: 7
allele frequency: 1.055838788500407e-4
allele num: 66298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21552A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21513A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20174A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20174A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20299A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.501T>C
  hgvsp: ENST00000600684.1:c.501T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20299A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21513A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20174A>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25816
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12811
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn167Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

19-56756717-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756717
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756717
    reference: chr 19
allele count: 8
allele frequency: 1.208532237597438e-4
allele num: 66196
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.502G>C
  hgvsp: ENSP00000470691.1:p.Glu168Gln
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20300C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21514C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20175C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20175C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20300C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21553C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20175C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21514C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11666
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu168Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

19-56756723-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756723
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756723
    reference: chr 19
allele count: 86
allele frequency: 1.290593673089621e-3
allele num: 66636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21559G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20181G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21520G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20181G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20306G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.508C>T
  hgvsp: ENSP00000470691.1:p.Arg170Cys
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21520G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20181G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20306G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25226
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12528
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 3300
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 29474
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg170Cys
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-56756724-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756724
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756724
    reference: chr 19
allele count: 26
allele frequency: 3.86215092097445e-4
allele num: 67320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20182C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20307C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20182C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21521C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20182C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21560C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.509G>A
  hgvsp: ENSP00000470691.1:p.Arg170His
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21521C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20307C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25114
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11822
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12848
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg170His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

19-56756725-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756725
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756725
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 67552
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20183A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21522A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20183A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21561A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20308A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21522A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.510T>C
  hgvsp: ENST00000600684.1:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20183A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20308A>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25091
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg170Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-56756725-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756725
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756725
    reference: chr 19
allele count: 1
allele frequency: 1.480341070582662e-5
allele num: 67552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20183A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21561A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20308A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21522A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.510T>G
  hgvsp: ENST00000600684.1:c.510T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20308A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21522A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20183A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20183A>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg170Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-56756727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756727
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756727
    reference: chr 19
allele count: 5
allele frequency: 7.428096030425482e-5
allele num: 67312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20185G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21524G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20185G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20310G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.512C>T
  hgvsp: ENSP00000470691.1:p.Pro171Leu
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21563G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21524G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20185G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20310G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29095
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro171Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

19-56756728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756728
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756728
    reference: chr 19
allele count: 4
allele frequency: 5.903361964638862e-5
allele num: 67758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20186C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20186C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.513G>A
  hgvsp: ENST00000600684.1:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20311C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20186C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21564C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20311C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21525C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21525C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29153
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Pro171Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

19-56756728-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756728
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756728
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 67758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21525C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.513G>C
  hgvsp: ENST00000600684.1:c.513G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20186C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20186C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20311C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20311C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21564C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21525C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20186C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 11817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24438
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29153
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro171Pro
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

19-56756730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756730
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756730
    reference: chr 19
allele count: 1
allele frequency: 1.455053400459797e-5
allele num: 68726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21566C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21527C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21527C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20188C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20188C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20313C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.515G>A
  hgvsp: ENSP00000470691.1:p.Gly172Glu
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20313C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20188C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3507
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly172Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

19-56756730-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756730
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756730
    reference: chr 19
allele count: 2
allele frequency: 2.910106800919594e-5
allele num: 68726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21527C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20313C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21527C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20188C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20188C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20313C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.515G>C
  hgvsp: ENSP00000470691.1:p.Gly172Ala
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21566C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20188C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly172Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

19-56756740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756740
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756740
    reference: chr 19
allele count: 7
allele frequency: 9.826768116348934e-5
allele num: 71234
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.525G>A
  hgvsp: ENST00000600684.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21576C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20323C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20198C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20198C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20323C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20198C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21537C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21537C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11666
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23255
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15587
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln175Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-56756744-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756744
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756744
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 72674
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20327T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.529A>C
  hgvsp: ENSP00000470691.1:p.Ser177Arg
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21541T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20202T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21580T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20202T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21541T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20202T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20327T>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22600
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser177Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

19-56756746-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756746
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756746
    reference: chr 19
allele count: 2
allele frequency: 2.748611950964763e-5
allele num: 72764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20204G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20329G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21582G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21543G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.531C>G
  hgvsp: ENSP00000470691.1:p.Ser177Arg
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20204G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20329G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20204G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21543G>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser177Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-56756748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756748
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756748
    reference: chr 19
allele count: 2495
allele frequency: 3.356381833835557e-2
allele num: 74336
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20331T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.533A>G
  hgvsp: ENSP00000470691.1:p.Gln178Arg
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21584T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20331T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20206T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21545T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20206T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21545T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20206T>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 2.75e1
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 21611
  bin: 7.5e0
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 1.25e1
  variant carriers: 466
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 17879
  bin: 2.25e1
  variant carriers: 468
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 1.75e1
  variant carriers: 551
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 5.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 17880
  bin: 6.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 5.75e1
  variant carriers: 28
hgvs: p.Gln178Arg
num of homozygotes: 300
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-56756754-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756754
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756754
    reference: chr 19
allele count: 2
allele frequency: 2.714293469409913e-5
allele num: 73684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21590A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20337A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20212A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20212A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20212A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21551A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.539T>A
  hgvsp: ENSP00000470691.1:p.Leu180Gln
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20337A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21551A>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11279
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu180Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

19-56756757-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756757
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756757
    reference: chr 19
allele count: 2
allele frequency: 2.700586027167896e-5
allele num: 74058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20215T>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21554T>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21593T>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.542A>T
  hgvsp: ENSP00000470691.1:p.Gln181Leu
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20215T>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21554T>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20340T>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20215T>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20340T>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11097
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln181Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-56756758-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756758
    reference: chr 19
allele count: 2
allele frequency: 2.700221418156289e-5
allele num: 74068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20216C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21555C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20341C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21594C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21555C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20216C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20341C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20216C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.543G>T
  hgvsp: ENSP00000470691.1:p.Gln181His
  variant of: http://identifiers.org/hgnc/37706
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln181His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

19-56756759-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756759
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756759
    reference: chr 19
allele count: 2
allele frequency: 2.70929287455974e-5
allele num: 73820
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21556T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20217T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21595T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20217T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21556T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.544A>G
  hgvsp: ENSP00000470691.1:p.Thr182Ala
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20342T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20342T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20217T>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11198
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr182Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/19-56756760-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756760
    reference: chr 19
allele count: 2
allele frequency: 2.712526447132859e-5
allele num: 73732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20218G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20343G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20343G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21557G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20218G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.545C>A
  hgvsp: ENSP00000470691.1:p.Thr182Asn
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21596G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20218G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21557G>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18802
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr182Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-56756760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756760
    reference: chr 19
allele count: 2
allele frequency: 2.712526447132859e-5
allele num: 73732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20218G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20218G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20343G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21596G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21557G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21557G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.545C>T
  hgvsp: ENSP00000470691.1:p.Thr182Ile
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20343G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20218G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11149
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27297
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr182Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

19-56756769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756769
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756769
    reference: chr 19
allele count: 1
allele frequency: 1.381711664409871e-5
allele num: 72374
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20352C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20352C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20227C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21566C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21566C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.554G>A
  hgvsp: ENSP00000470691.1:p.Arg185Lys
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20227C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20227C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21605C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17315
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28307
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg185Lys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-56756773-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756773
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756773
    reference: chr 19
allele count: 1
allele frequency: 1.395517597476904e-5
allele num: 71658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20231G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20356G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20231G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21570G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21609G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.558C>G
  hgvsp: ENST00000600684.1:c.558C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21570G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20231G>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20356G>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val186Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

19-56756780-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756780
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756780
    reference: chr 19
allele count: 1
allele frequency: 1.42600462025497e-5
allele num: 70126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21616G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21577G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20238G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20238G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20238G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.565C>T
  hgvsp: ENST00000600684.1:c.565C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20363G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20363G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21577G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu189Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

19-56756782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756782
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756782
    reference: chr 19
allele count: 1
allele frequency: 1.435173225408307e-5
allele num: 69678
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20365C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21579C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.567G>A
  hgvsp: ENST00000600684.1:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21579C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20365C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20240C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20240C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20240C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21618C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu189Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-56756784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756784
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756784
    reference: chr 19
allele count: 2
allele frequency: 2.888670633774337e-5
allele num: 69236
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20367G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20242G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20367G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20242G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21581G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20242G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.569C>T
  hgvsp: ENSP00000470691.1:p.Ser190Phe
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21620G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21581G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13988
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser190Phe
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

19-56756794-GGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756794
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756792
    reference: chr 19
allele count: 21
allele frequency: 3.165606439747958e-4
allele num: 66338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20379_-2-20378delAC
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20379_-2-20378delAC
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21632_-15-21631delAC
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21593_-54-21592delAC
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20254_-127-20253delAC
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20254_-127-20253delAC
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+2_579+3delTG
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20254_-127-20253delAC
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21593_34-21592delAC
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16415
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22269
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
hgvs: c.579+2_579+3delTG
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: GGT
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-56756795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756795
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756795
    reference: chr 19
allele count: 3
allele frequency: 4.595729035816048e-5
allele num: 65278
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+1G>A
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21592C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20253C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20378C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21631C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20378C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20253C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21592C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20253C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17267
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
hgvs: c.579+1G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

19-56756799-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756799
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756799
    reference: chr 19
allele count: 1
allele frequency: 1.540404818386272e-5
allele num: 64918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21635C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+5G>A
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20257C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20257C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21596C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20382C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20257C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21596C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20382C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17562
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33881
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
hgvs: c.579+5G>A
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

19-56756799-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756799
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756799
    reference: chr 19
allele count: 1
allele frequency: 1.540404818386272e-5
allele num: 64918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20257C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20257C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20382C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+5G>C
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20382C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21596C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21596C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21635C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20257C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9220
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33881
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
hgvs: c.579+5G>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

19-56756800-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756800
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756800
    reference: chr 19
allele count: 3
allele frequency: 4.639366571817395e-5
allele num: 64664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20258A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21597A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20258A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21636A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20383A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21597A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20383A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+6T>C
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20258A>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17922
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5600
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
hgvs: c.579+6T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

19-56756805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756805
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756805
    reference: chr 19
allele count: 1
allele frequency: 1.597852486258469e-5
allele num: 62584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20263C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21602C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20388C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20263C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20388C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+11G>A
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21641C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20263C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21602C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6483
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

19-56756812-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756812
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756812
    reference: chr 19
allele count: 1
allele frequency: 1.704448610874382e-5
allele num: 58670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20270A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20270A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20395A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+18T>C
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21609A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21648A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20270A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20395A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21609A>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

19-56756813-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756813
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756813
    reference: chr 19
allele count: 5
allele frequency: 8.624555835374478e-5
allele num: 57974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20396C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20271C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21610C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21649C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+19G>C
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20271C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21610C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20396C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20271C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21328
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-56756814-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756814
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756814
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 57438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20272C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21650C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20397C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+20G>C
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20272C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21611C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21611C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20272C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20397C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22294
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

19-56756821-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756821
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756821
    reference: chr 19
allele count: 1
allele frequency: 2.014423270617622e-5
allele num: 49642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20279C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20404C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21657C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20279C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21618C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20404C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21618C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20279C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+27G>T
  variant of: http://identifiers.org/hgnc/37706
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23073
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19646
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

19-56756826-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756826
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756826
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 43616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20284T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21662T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20284T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20409T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+32A>G
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20409T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21623T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21623T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20284T>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24791
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4400
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

19-56756840-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756840
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756840
    reference: chr 19
allele count: 1
allele frequency: 3.100390649221802e-5
allele num: 32254
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20423T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20298T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21637T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20423T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+46A>G
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20298T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21637T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21676T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20298T>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29513
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15855
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14274
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

19-56756841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56756841
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56756841
    reference: chr 19
allele count: 1
allele frequency: 3.10481867858917e-5
allele num: 32208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-20299G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-21638G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-20299G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-20299G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-21638G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-21677G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-20424G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-20424G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.579+47C>T
  variant of: http://identifiers.org/hgnc/37706
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12198
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-56757636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757636
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757636
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 7756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21219G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.580-49C>T
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21094G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21094G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21094G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21219G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22433G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22472G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22433G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22436
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/19-56757647-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757647
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757647
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 7836
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22444T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21230T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21230T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22483T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21105T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.580-38A>C
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22444T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21105T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21105T>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34997
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6579
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

19-56757649-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757649
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757649
    reference: chr 19
allele count: 1205
allele frequency: 1.483990147783251e-1
allele num: 8120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21232T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21107T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22485T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21107T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21232T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22446T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22446T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.580-36A>G
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21107T>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 2.25e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31396
  bin: 2.5e0
  variant carriers: 1625
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 7.5e0
  variant carriers: 1625
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.25e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 2.25e1
  variant carriers: 249
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 1.75e1
  variant carriers: 252
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 6.25e1
  variant carriers: 266
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.75e1
  variant carriers: 298
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 95
num of homozygotes: 95
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-56757655-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757655
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757655
    reference: chr 19
allele count: 5
allele frequency: 6.137981831573779e-4
allele num: 8146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21113G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22452G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21238G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22452G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21113G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22491G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.580-30C>A
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21113G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21238G>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35274
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4852
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

19-56757658-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757658
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757658
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 8224
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21241A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21241A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22494A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22455A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21116A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.580-27T>G
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21116A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22455A>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21116A>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 35706
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

19-56757661-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757661
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757661
    reference: chr 19
allele count: 1403
allele frequency: 1.609314062858454e-1
allele num: 8718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21119A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21244A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22458A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22458A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22497A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21244A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21119A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.580-24T>C
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21119A>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 2.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 7.5e0
  variant carriers: 1985
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 2.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 31841
  bin: 2.5e0
  variant carriers: 1563
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 1.25e1
  variant carriers: 451
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6417
  bin: 2.5e0
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.25e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 4302
  bin: 2.25e1
  variant carriers: 331
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.75e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 9.25e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.25e1
  variant carriers: 44
num of homozygotes: 110
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

19-56757671-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757671
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757671
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 8986
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21254A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.580-14T>A
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21129A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21129A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22507A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21129A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22468A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21254A>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22468A>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/19-56757682-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757682
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757682
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 9676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22518G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22479G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22479G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21265G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21140G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21140G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21140G>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.580-3C>A
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21265G>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35383
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32566
  bin: 7.5e0
  variant carriers: 1
hgvs: c.580-3C>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

19-56757718-A-ATTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757718
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757721
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 20484
alternate allele: ATTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21177_-127-21176insGAA
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22516_34-22515insGAA
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22555_-15-22554insGAA
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21302_-2-21301insGAA
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: protein_altering_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.614_615insTCT
  hgvsp: ENSP00000470691.1:p.Met205delinsIleLeu
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21302_-2-21301insGAA
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21177_-127-21176insGAA
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22516_-54-22515insGAA
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21177_-127-21176insGAA
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: protein altering
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33577
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met205delinsIleLeu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS

http://identifiers.org/exac.variant/19-56757718-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757718
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757718
    reference: chr 19
allele count: 1
allele frequency: 4.881859011911736e-5
allele num: 20484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21176T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21176T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22515T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22554T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.613A>C
  hgvsp: ENSP00000470691.1:p.Met205Leu
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21301T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21176T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21301T>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22515T>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33577
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met205Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-56757719-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757719
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757719
    reference: chr 19
allele count: 1
allele frequency: 4.739785761683572e-5
allele num: 21098
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.614T>C
  hgvsp: ENSP00000470691.1:p.Met205Thr
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22555A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22516A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21302A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22516A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21177A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21177A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21302A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21177A>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33928
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met205Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

19-56757726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757726
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757726
    reference: chr 19
allele count: 1
allele frequency: 4.059759662227996e-5
allele num: 24632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22562A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.621T>C
  hgvsp: ENST00000600684.1:c.621T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21184A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22523A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21184A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22523A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21184A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21309A>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21309A>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser207Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

19-56757753-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757753
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757753
    reference: chr 19
allele count: 1
allele frequency: 1.835805551475988e-5
allele num: 54472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22589T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22550T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.648A>G
  hgvsp: ENST00000600684.1:c.648A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21211T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21211T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21336T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21211T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22550T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21336T>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16782
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro216Pro
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

19-56757756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757756
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757756
    reference: chr 19
allele count: 2
allele frequency: 3.432533553015481e-5
allele num: 58266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21214G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21214G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.651C>T
  hgvsp: ENST00000600684.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22553G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22553G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21339G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21339G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22592G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21214G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18787
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Thr217Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-56757760-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757760
    reference: chr 19
allele count: 2
allele frequency: 3.165859372526673e-5
allele num: 63174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21218C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22557C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21343C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21343C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.655G>C
  hgvsp: ENSP00000470691.1:p.Glu219Gln
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21218C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22596C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22557C>G
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21218C>G
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21131
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Glu219Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

19-56757763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757763
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757763
    reference: chr 19
allele count: 1
allele frequency: 1.488006666269865e-5
allele num: 67204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21221T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21346T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22560T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22599T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.658A>G
  hgvsp: ENSP00000470691.1:p.Lys220Glu
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21221T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21346T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22560T>C
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21221T>C
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3942
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys220Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

19-56757774-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757774
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757774
    reference: chr 19
allele count: 13
allele frequency: 1.627359671523709e-4
allele num: 79884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22571G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21232G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21357G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21357G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22571G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.669C>T
  hgvsp: ENST00000600684.1:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22610G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21232G>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21232G>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16073
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28890
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn223Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-56757775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757775
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757775
    reference: chr 19
allele count: 6
allele frequency: 7.335142668524903e-5
allele num: 81798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22611C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21233C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21358C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.670G>A
  hgvsp: ENSP00000470691.1:p.Val224Ile
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21358C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22572C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21233C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22572C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21233C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val224Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-56757775-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757775
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757775
    reference: chr 19
allele count: 2
allele frequency: 2.445047556174968e-5
allele num: 81798
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21358C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22611C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22572C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.670G>T
  hgvsp: ENSP00000470691.1:p.Val224Leu
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22572C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21233C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21233C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21358C>A
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21233C>A
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29684
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Val224Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

19-56757778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757778
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757778
    reference: chr 19
allele count: 1
allele frequency: 1.168524620813761e-5
allele num: 85578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21236C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21361C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22575C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22614C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22575C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.673G>A
  hgvsp: ENSP00000470691.1:p.Asp225Asn
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21236C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21236C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21361C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp225Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

19-56757787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56757787
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56757787
    reference: chr 19
allele count: 1
allele frequency: 1.064599923348806e-5
allele num: 93932
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000467631
  ensembl transcript: ENST00000587340
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587340.1:c.-2-21370C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468797
  ensembl transcript: ENST00000592509
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592509.1:c.-2-21370C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466830
  ensembl transcript: ENST00000592679
  gene symbol: ZSCAN5A
  hgvsc: ENST00000592679.1:c.-127-21245C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000267908
  ensembl protein: ENSP00000470691
  ensembl transcript: ENST00000600684
  gene symbol: ZSCAN5D
  hgvsc: ENST00000600684.1:c.682G>A
  hgvsp: ENSP00000470691.1:p.Glu228Lys
  variant of: http://identifiers.org/hgnc/37706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000464936
  ensembl transcript: ENST00000593106
  gene symbol: ZSCAN5A
  hgvsc: ENST00000593106.1:c.-15-22623C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468675
  ensembl transcript: ENST00000588442
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588442.1:c.-127-21245C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000466445
  ensembl transcript: ENST00000587492
  gene symbol: ZSCAN5A
  hgvsc: ENST00000587492.1:c.-54-22584C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000468008
  ensembl transcript: ENST00000588955
  gene symbol: ZSCAN5A
  hgvsc: ENST00000588955.1:c.-127-21245C>T
  variant of: http://identifiers.org/hgnc/23710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131848
  ensembl protein: ENSP00000254165
  ensembl transcript: ENST00000254165
  gene symbol: ZSCAN5A
  hgvsc: ENST00000254165.3:c.34-22584C>T
  variant of: http://identifiers.org/hgnc/23710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu228Lys
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 2001
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1043
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 3.995205753096284e-4
allele num: 5006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.198362438431523e-5
allele num: 31266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.863e0

QD
type: SiteQuality
SIO_000300: 1.143e1

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 7.52338e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

GenotypeQuality
all individuals: 1733
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 743
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32676
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 60
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3077
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.305567816381865e-5
allele num: 31718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.031694433157253e-4
allele num: 4922
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.203613926840018e-4
allele num: 4538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.40607424071991e-4
allele num: 7112
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.009e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

DP
type: SiteQuality
SIO_000300: 7.58162e5

FS
type: SiteQuality
SIO_000300: 3.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 60
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32676
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 743
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.152783908190933e-5
allele num: 31718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7112
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

QD
type: SiteQuality
SIO_000300: 1.009e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 3.732e0

DP
type: SiteQuality
SIO_000300: 7.58162e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

GenotypeQuality
all individuals: 1108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5384
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.383125864453665e-4
allele num: 7230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33860
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.161e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

FS
type: SiteQuality
SIO_000300: 1.002e1

QD
type: SiteQuality
SIO_000300: 9.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.14e0

DP
type: SiteQuality
SIO_000300: 7.7618e5

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
all individuals: 3520
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11056
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.958404828116679e-5
allele num: 33802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3850
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 9.803921568627451e-4
allele num: 7140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4792
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 7.79414e5

VQSLOD
type: SiteQuality
SIO_000300: -1.992e0

MQ
type: SiteQuality
SIO_000300: 5.78e1

QD
type: SiteQuality
SIO_000300: 1.112e1

FS
type: SiteQuality
SIO_000300: 4.878e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.54e-1

GenotypeQuality
all individuals: 299
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3483
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31373
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12301
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.901915264074289e-5
allele num: 34460
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.84587e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.401e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

QD
type: SiteQuality
SIO_000300: 1.131e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

GenotypeQuality
all individuals: 1146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1451
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 631
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.50357732526142e-4
allele num: 7268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.755e-1

FS
type: SiteQuality
SIO_000300: 9.976000000000001e0

DP
type: SiteQuality
SIO_000300: 7.85212e5

GenotypeQuality
all individuals: 1075
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12730
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 833
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.711348449368896e-5
allele num: 35018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4990
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

DP
type: SiteQuality
SIO_000300: 7.89263e5

FS
type: SiteQuality
SIO_000300: 2.345e0

QD
type: SiteQuality
SIO_000300: 1.054e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

GenotypeQuality
all individuals: 30776
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3534
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13048
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7346
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.904724716907458e-4
allele num: 5122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 9.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.884e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

DP
type: SiteQuality
SIO_000300: 7.98094e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

GenotypeQuality
all individuals: 803
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.128819157720892e-4
allele num: 7266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.148e0

VQSLOD
type: SiteQuality
SIO_000300: -1.045e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.542e1

DP
type: SiteQuality
SIO_000300: 8.01273e5

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

GenotypeQuality
all individuals: 1069
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 210
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 8.335648791330926e-4
allele num: 7198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.695853776891141e-5
allele num: 37094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5238
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

QD
type: SiteQuality
SIO_000300: 1.736e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 8.01279e5

MQ
type: SiteQuality
SIO_000300: 5.705e1

VQSLOD
type: SiteQuality
SIO_000300: -8.421e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 1.148e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 29992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
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variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12119
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variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.700075602116859e-5
allele num: 37036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 9.768350544236673e-4
allele num: 7166
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.75e1

DP
type: SiteQuality
SIO_000300: 8.02823e5

FS
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

MQ
type: SiteQuality
SIO_000300: 5.739e1

VQSLOD
type: SiteQuality
SIO_000300: -1.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
all individuals: 1675
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1602
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 757
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3605
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
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variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 1.576612687723799e-3
allele num: 37422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 27
allele frequency: 6.434699714013346e-3
allele num: 4196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

DP
type: SiteQuality
SIO_000300: 8.04484e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.195e1

GenotypeQuality
all individuals: 3572
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
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variant carriers: 1

GenotypeQuality
all individuals: 86
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 847
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1181
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4220
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 3.229095853161115e-3
allele num: 5884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.05797714769361e-4
allele num: 37808
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.602638846271863e-4
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7032
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 1.297e1

FS
type: SiteQuality
SIO_000300: 2.451e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 8.08216e5

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

GenotypeQuality
all individuals: 29632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 3581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 2471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
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variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.844e0

VQSLOD
type: SiteQuality
SIO_000300: -3.649e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

QD
type: SiteQuality
SIO_000300: 9.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 8.0791e5

GenotypeQuality
all individuals: 1324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.86150409530901e-4
allele num: 5372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.649e-1

FS
type: SiteQuality
SIO_000300: 5.844e0

DP
type: SiteQuality
SIO_000300: 8.0791e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

QD
type: SiteQuality
SIO_000300: 9.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 3552
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
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GenotypeQuality
all individuals: 143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.058033116436544e-4
allele num: 37806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.693766937669377e-4
allele num: 5904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5326
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

QD
type: SiteQuality
SIO_000300: 1.363e1

FS
type: SiteQuality
SIO_000300: 3.98e0

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 8.1268e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
all individuals: 3177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.496110113704369e-4
allele num: 6684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.627016234960332e-5
allele num: 38066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.440922190201729e-4
allele num: 6940
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.86219739292365e-4
allele num: 5370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.131e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.507e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 8.1871e5

GenotypeQuality
all individuals: 795
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 5.507e0

QD
type: SiteQuality
SIO_000300: 1.131e1

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.1871e5

GenotypeQuality
all individuals: 894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.589600165734411e-5
allele num: 38616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.16395e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.902e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.606e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.294e0

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

FS
type: SiteQuality
SIO_000300: 4.398e0

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.25e-1

GenotypeQuality
all individuals: 1193
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3507
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29045
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.179200331468821e-5
allele num: 38616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6814
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.294e0

DP
type: SiteQuality
SIO_000300: 8.16395e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

FS
type: SiteQuality
SIO_000300: 4.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.902e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

VQSLOD
type: SiteQuality
SIO_000300: -2.606e0

GenotypeQuality
all individuals: 70
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 483
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 555
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28470
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variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 966
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.01803374054683e-3
allele num: 6876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

FS
type: SiteQuality
SIO_000300: 6.889999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.09e-1

DP
type: SiteQuality
SIO_000300: 8.42258e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

QD
type: SiteQuality
SIO_000300: 1.163e1

GenotypeQuality
all individuals: 850
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28078
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.5e0
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GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.75e1
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GenotypeQuality
all individuals: 1029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.676e0

VQSLOD
type: SiteQuality
SIO_000300: -7.969000000000001e-1

DP
type: SiteQuality
SIO_000300: 8.60333e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

QD
type: SiteQuality
SIO_000300: 2.394e1

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.086e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 2764
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17013
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.5e0
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GenotypeQuality
all individuals: 643
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2686
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.215330084182543e-4
allele num: 4514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.42883513067133e-5
allele num: 41172
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-1

FS
type: SiteQuality
SIO_000300: 1.097e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

DP
type: SiteQuality
SIO_000300: 8.6338e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.661e-1

QD
type: SiteQuality
SIO_000300: 1.954e1

GenotypeQuality
all individuals: 446
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 199
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 1561
bin: 3.75e1
variant carriers: 34

GenotypeQuality
all individuals: 1669
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 2429
bin: 2.75e1
variant carriers: 15

GenotypeQuality
all individuals: 26892
bin: 2.25e1
variant carriers: 24

GenotypeQuality
all individuals: 2455
bin: 3.25e1
variant carriers: 23

GenotypeQuality
all individuals: 1863
bin: 9.75e1
variant carriers: 1832

GenotypeQuality
all individuals: 707
bin: 1.75e1
variant carriers: 16

GenotypeQuality
all individuals: 725
bin: 4.25e1
variant carriers: 32

GenotypeQuality
all individuals: 111
bin: 8.25e1
variant carriers: 55

GenotypeQuality
all individuals: 194
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variant carriers: 41

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 47

GenotypeQuality
all individuals: 904
bin: 4.75e1
variant carriers: 52

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 1.224666218422822e-3
allele num: 41644
num of homozygotes: 1

African
type: Population
allele count: 2275
allele frequency: 3.127577673907067e-1
allele num: 7274
num of homozygotes: 296

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.193944712593243e-4
allele num: 4558
num of homozygotes: 0

Latino
type: Population
allele count: 156
allele frequency: 2.036021926389977e-2
allele num: 7662
num of homozygotes: 3

East Asian
type: Population
allele count: 6
allele frequency: 1.017984390906006e-3
allele num: 5894
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.439183190292986e-4
allele num: 6758
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 5.494505494505495e-3
allele num: 546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.602e1

DP
type: SiteQuality
SIO_000300: 8.83503e5

VQSLOD
type: SiteQuality
SIO_000300: 6.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.679e-1

GenotypeQuality
all individuals: 2374
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 3.003003003003003e-4
allele num: 6660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.309e0

VQSLOD
type: SiteQuality
SIO_000300: -3.791e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 2.298e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

DP
type: SiteQuality
SIO_000300: 8.75713e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.637e1

GenotypeQuality
all individuals: 1085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.001200480192077e-4
allele num: 6664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42128
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.986e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 8.81161e5

QD
type: SiteQuality
SIO_000300: 1.212e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeQuality
all individuals: 19683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.746309744173905e-5
allele num: 42138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.415e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.46e-1

DP
type: SiteQuality
SIO_000300: 8.80936e5

QD
type: SiteQuality
SIO_000300: 7.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 529
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variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4574
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.831501831501832e-3
allele num: 546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.378686964795433e-5
allele num: 42040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

FS
type: SiteQuality
SIO_000300: 1.508e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.741e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.79305e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

QD
type: SiteQuality
SIO_000300: 6.96e0

GenotypeQuality
all individuals: 27297
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 2116
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 606
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.504664459825459e-4
allele num: 6646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.379819133745835e-5
allele num: 42020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

QD
type: SiteQuality
SIO_000300: 1.585e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 8.79188e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

GenotypeQuality
all individuals: 521
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 999
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variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.009328919650918e-4
allele num: 6646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 8.79188e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.585e1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 453
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.694915254237288e-4
allele num: 5900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 6.701e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

DP
type: SiteQuality
SIO_000300: 8.57679e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2017
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variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.554243083618278e-4
allele num: 6434
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.4489e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

QD
type: SiteQuality
SIO_000300: 1.424e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 213
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 391
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GenotypeQuality
all individuals: 922
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.594896331738437e-4
allele num: 6270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40496
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.94e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.0533e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

DP
type: SiteQuality
SIO_000300: 8.23782e5

VQSLOD
type: SiteQuality
SIO_000300: -1.526e0

GenotypeQuality
all individuals: 534
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30070
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.484595507851322e-5
allele num: 40248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.44e0

MQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.604e0

DP
type: SiteQuality
SIO_000300: 8.16748e5

FS
type: SiteQuality
SIO_000300: 3.31e0

MQ
type: SiteQuality
SIO_000300: 5.685e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.621e0

GenotypeQuality
all individuals: 2525
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15648
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.991016170892394e-5
allele num: 40072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

DP
type: SiteQuality
SIO_000300: 8.07846e5

VQSLOD
type: SiteQuality
SIO_000300: -2.208e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.973e0

QD
type: SiteQuality
SIO_000300: 4.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
all individuals: 627
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4894
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
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variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 9.75e1
variant carriers: 20

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 4.674596166831143e-4
allele num: 38506
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.399776035834267e-4
allele num: 7144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.686035613870666e-4
allele num: 4268
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.56686e5

FS
type: SiteQuality
SIO_000300: 6.12e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5247
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.274539796402764e-5
allele num: 37918
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.429388221841052e-4
allele num: 6996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

QD
type: SiteQuality
SIO_000300: 8.880000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -4.404e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.093e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.203e0

DP
type: SiteQuality
SIO_000300: 7.36359e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5489
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5364
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.323420074349442e-4
allele num: 4304
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.484e0

QD
type: SiteQuality
SIO_000300: 5.28e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 2.905e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 7.29264e5

VQSLOD
type: SiteQuality
SIO_000300: -2.045e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 5489
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.648024573668044e-5
allele num: 37764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4210
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.484e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.28e0

DP
type: SiteQuality
SIO_000300: 7.29264e5

VQSLOD
type: SiteQuality
SIO_000300: -2.045e0

FS
type: SiteQuality
SIO_000300: 2.905e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 10329
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 5.142269454919438e-4
allele num: 5834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

QD
type: SiteQuality
SIO_000300: 1.046e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 7.227e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

FS
type: SiteQuality
SIO_000300: 2.217e0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3389
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 2585
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.761183515322297e-4
allele num: 5678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.82898e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

FS
type: SiteQuality
SIO_000300: 2.077e0

QD
type: SiteQuality
SIO_000300: 6.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.454e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.298999999999999e-1

GenotypeQuality
all individuals: 8376
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34622
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4529
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5342
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.92192613370734e-5
allele num: 34224
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3716
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.901e0

ReadPosRankSum
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SIO_000300: 6.1e-2

BaseQRankSum
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SIO_000300: 1.84e-1

FS
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 6.30684e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3646
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 5.1440329218107e-4
allele num: 3888
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 8.885729518393461e-5
allele num: 33762
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.340000000000001e-1

DP
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.007e0

ReadPosRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.67e-2

QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -5.659999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5238
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 33432
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
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SIO_000300: 6.13484e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.449941350997033e-5
allele num: 28986
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3010
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3928
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

QD
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ClippingRankSum
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SIO_000300: -8.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -2.22e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.5868e5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25476
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3202
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
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QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.2533e5

MQ
type: SiteQuality
SIO_000300: 5.443e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.53e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 4.468275245755138e-4
allele num: 2238
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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MQ
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DP
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2242
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European (Non-Finnish)
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allele count: 1
allele frequency: 5.324813631522896e-5
allele num: 18780
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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African
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FS
type: SiteQuality
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DP
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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Other
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 29

GenotypeQuality
all individuals: 22095
bin: 7.5e0
variant carriers: 655

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 47

GenotypeQuality
all individuals: 1486
bin: 9.75e1
variant carriers: 1254

GenotypeQuality
all individuals: 191
bin: 7.75e1
variant carriers: 58

GenotypeQuality
all individuals: 286
bin: 5.75e1
variant carriers: 262

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 104

GenotypeQuality
all individuals: 357
bin: 6.75e1
variant carriers: 110

GenotypeQuality
all individuals: 2116
bin: 1.25e1
variant carriers: 245

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 105

African
type: Population
allele count: 71
allele frequency: 5.725806451612903e-2
allele num: 1240
num of homozygotes: 1

East Asian
type: Population
allele count: 96
allele frequency: 3.037974683544304e-1
allele num: 316
num of homozygotes: 17

South Asian
type: Population
allele count: 113
allele frequency: 2.414529914529915e-1
allele num: 468
num of homozygotes: 10

Latino
type: Population
allele count: 56
allele frequency: 1.891891891891892e-1
allele num: 296
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 245
allele frequency: 1.53894472361809e-1
allele num: 1592
num of homozygotes: 15

European (Non-Finnish)
type: Population
allele count: 603
allele frequency: 1.471449487554905e-1
allele num: 4098
num of homozygotes: 41

Other
type: Population
allele count: 21
allele frequency: 1.909090909090909e-1
allele num: 110
num of homozygotes: 3

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.14e-2

QD
type: SiteQuality
SIO_000300: 1.82e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 2.14198e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28692
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 926
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3081
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.569858712715856e-3
allele num: 1274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.320644216691069e-4
allele num: 4098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

MQ
type: SiteQuality
SIO_000300: 5.763e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.51e-2

FS
type: SiteQuality
SIO_000300: 1.1585e1

DP
type: SiteQuality
SIO_000300: 2.2131e5

GenotypeQuality
all individuals: 4364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
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variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29732
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1274
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.2672e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.596e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 135

GenotypeQuality
all individuals: 222
bin: 5.25e1
variant carriers: 181

GenotypeQuality
all individuals: 1787
bin: 1.25e1
variant carriers: 302

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 77

GenotypeQuality
all individuals: 360
bin: 6.75e1
variant carriers: 76

GenotypeQuality
all individuals: 24843
bin: 7.5e0
variant carriers: 532

GenotypeQuality
all individuals: 215
bin: 3.75e1
variant carriers: 29

GenotypeQuality
all individuals: 1198
bin: 1.75e1
variant carriers: 344

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 257

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 33

GenotypeQuality
all individuals: 1029
bin: 6.25e1
variant carriers: 192

GenotypeQuality
all individuals: 195
bin: 7.75e1
variant carriers: 40

GenotypeQuality
all individuals: 1710
bin: 9.75e1
variant carriers: 1475

GenotypeQuality
all individuals: 208
bin: 8.25e1
variant carriers: 90

South Asian
type: Population
allele count: 126
allele frequency: 2.377358490566038e-1
allele num: 530
num of homozygotes: 9

Latino
type: Population
allele count: 66
allele frequency: 2.088607594936709e-1
allele num: 316
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 733
allele frequency: 1.637622877569258e-1
allele num: 4476
num of homozygotes: 50

Other
type: Population
allele count: 23
allele frequency: 1.982758620689655e-1
allele num: 116
num of homozygotes: 3

African
type: Population
allele count: 87
allele frequency: 6.621004566210045e-2
allele num: 1314
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 251
allele frequency: 1.553217821782178e-1
allele num: 1616
num of homozygotes: 14

East Asian
type: Population
allele count: 117
allele frequency: 3.342857142857143e-1
allele num: 350
num of homozygotes: 24

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
type: SiteQuality
SIO_000300: 8.51e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.82e-2

DP
type: SiteQuality
SIO_000300: 2.41251e5

QD
type: SiteQuality
SIO_000300: 1.85e1

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32294
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -1.125e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.809999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.61081e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.44e1

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
all individuals: 256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11175
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.073e1

VQSLOD
type: SiteQuality
SIO_000300: -3.002e-1

DP
type: SiteQuality
SIO_000300: 2.92705e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.320000000000001e-2

GenotypeQuality
all individuals: 833
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15308
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2342
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.063e1

MQ
type: SiteQuality
SIO_000300: 5.317e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.02e-2

DP
type: SiteQuality
SIO_000300: 4.96835e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15308
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1164
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.690036900369004e-4
allele num: 2710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 4.96835e5

MQ
type: SiteQuality
SIO_000300: 5.317e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

QD
type: SiteQuality
SIO_000300: 1.063e1

GenotypeQuality
all individuals: 14826
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32079
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4418
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.61794500723589e-4
allele num: 2764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

DP
type: SiteQuality
SIO_000300: 5.02651e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.021e0

MQ
type: SiteQuality
SIO_000300: 5.699e1

VQSLOD
type: SiteQuality
SIO_000300: -8.653999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11948
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.487271638215035e-5
allele num: 13356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1962
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

FS
type: SiteQuality
SIO_000300: 4.93e0

VQSLOD
type: SiteQuality
SIO_000300: -5.131e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 5.43205e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.495037047392702e-5
allele num: 28612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.062e0

QD
type: SiteQuality
SIO_000300: 1.128e1

MQRankSum
type: SiteQuality
SIO_000300: -2.079e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.631e0

DP
type: SiteQuality
SIO_000300: 7.92959e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.43e-1

MQ
type: SiteQuality
SIO_000300: 5.578e1

GenotypeQuality
all individuals: 26613
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.135839384878257e-4
allele num: 4682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.016129032258064e-3
allele num: 496
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.077e0

MQ
type: SiteQuality
SIO_000300: 5.714e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.555e1

DP
type: SiteQuality
SIO_000300: 8.26807e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1487
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.002400960384154e-5
allele num: 33320
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 1.306e1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

FS
type: SiteQuality
SIO_000300: 2.619e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 8.68291e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 625
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GenotypeQuality
all individuals: 444
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.810251798561151e-5
allele num: 35584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6812
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.267e1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

MQ
type: SiteQuality
SIO_000300: 5.811e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.133e0

VQSLOD
type: SiteQuality
SIO_000300: -6.487000000000001e-1

DP
type: SiteQuality
SIO_000300: 8.99557e5

GenotypeQuality
all individuals: 2895
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.319109461966605e-5
allele num: 43120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.15325474115838e-3
allele num: 7804
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.185267857142857e-4
allele num: 7168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.103e0

MQ
type: SiteQuality
SIO_000300: 5.712e1

FS
type: SiteQuality
SIO_000300: 6.850000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.3e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 1.010151e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3013
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.353729524840937e-4
allele num: 44322
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.763e1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 4.19e0

QD
type: SiteQuality
SIO_000300: 1.356e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.174e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
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Latino
type: Population
allele count: 1
allele frequency: 1.070893124866138e-4
allele num: 9338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.256215874734895e-5
allele num: 44322
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.174e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

FS
type: SiteQuality
SIO_000300: 4.19e0

QD
type: SiteQuality
SIO_000300: 1.356e1

DP
type: SiteQuality
SIO_000300: 1.027675e6

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 459
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GenotypeQuality
all individuals: 3208
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.218026796589525e-4
allele num: 8210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.41e0

QD
type: SiteQuality
SIO_000300: 2.546e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.732e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.819e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

DP
type: SiteQuality
SIO_000300: 1.0617e6