17-44115925-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115925
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115925
    reference: chr 17
allele count: 1
allele frequency: 8.275405494869249e-6
allele num: 120840
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2520A>T
  hgvsp: ENST00000262419.6:c.2520A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6737A>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2520A>T
  hgvsp: ENST00000574590.1:c.2520A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.492A>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.159A>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.402A>T
  hgvsp: ENST00000393476.3:c.402A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2331A>T
  hgvsp: ENST00000575318.1:c.2331A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2520A>T
  hgvsp: ENST00000432791.1:c.2520A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2520A>T
  hgvsp: ENST00000572904.1:c.2520A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.376A>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser840Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-44115932-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115932
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115932
    reference: chr 17
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6730C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2513C>G
  hgvsp: ENSP00000461484.1:p.Ser838Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2513C>G
  hgvsp: ENSP00000461812.1:p.Ser838Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.395C>G
  hgvsp: ENSP00000377117.3:p.Ser132Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.152C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2513C>G
  hgvsp: ENSP00000387393.1:p.Ser838Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.485C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2324C>G
  hgvsp: ENSP00000461299.1:p.Ser775Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.369C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2513C>G
  hgvsp: ENSP00000262419.6:p.Ser838Cys
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser838Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/17-44115935-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115935
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115935
    reference: chr 17
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.482G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2510G>T
  hgvsp: ENSP00000387393.1:p.Ser837Ile
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2510G>T
  hgvsp: ENSP00000262419.6:p.Ser837Ile
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.392G>T
  hgvsp: ENSP00000377117.3:p.Ser131Ile
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2510G>T
  hgvsp: ENSP00000461812.1:p.Ser837Ile
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.366G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2321G>T
  hgvsp: ENSP00000461299.1:p.Ser774Ile
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6727G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2510G>T
  hgvsp: ENSP00000461484.1:p.Ser837Ile
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.149G>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7974
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser837Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

17-44115936-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115936
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115936
    reference: chr 17
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2509A>G
  hgvsp: ENSP00000461812.1:p.Ser837Gly
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2320A>G
  hgvsp: ENSP00000461299.1:p.Ser774Gly
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2509A>G
  hgvsp: ENSP00000387393.1:p.Ser837Gly
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.148A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.391A>G
  hgvsp: ENSP00000377117.3:p.Ser131Gly
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2509A>G
  hgvsp: ENSP00000461484.1:p.Ser837Gly
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.365A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.481A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2509A>G
  hgvsp: ENSP00000262419.6:p.Ser837Gly
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6726A>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser837Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-44115943-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115943
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115943
    reference: chr 17
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2502A>C
  hgvsp: ENST00000574590.1:c.2502A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.141A>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2502A>C
  hgvsp: ENST00000432791.1:c.2502A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2502A>C
  hgvsp: ENST00000572904.1:c.2502A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2313A>C
  hgvsp: ENST00000575318.1:c.2313A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.358A>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6719A>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.474A>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.384A>C
  hgvsp: ENST00000393476.3:c.384A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2502A>C
  hgvsp: ENST00000262419.6:c.2502A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala834Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

17-44115944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115944
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115944
    reference: chr 17
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.473C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.357C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2501C>T
  hgvsp: ENSP00000461812.1:p.Ala834Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2501C>T
  hgvsp: ENSP00000387393.1:p.Ala834Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.383C>T
  hgvsp: ENSP00000377117.3:p.Ala128Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.140C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6718C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2312C>T
  hgvsp: ENSP00000461299.1:p.Ala771Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2501C>T
  hgvsp: ENSP00000262419.6:p.Ala834Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2501C>T
  hgvsp: ENSP00000461484.1:p.Ala834Val
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala834Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

17-44115950-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115950
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115950
    reference: chr 17
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.134C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2495C>A
  hgvsp: ENSP00000387393.1:p.Ser832Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.351C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2495C>A
  hgvsp: ENSP00000461484.1:p.Ser832Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.377C>A
  hgvsp: ENSP00000377117.3:p.Ser126Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2306C>A
  hgvsp: ENSP00000461299.1:p.Ser769Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2495C>A
  hgvsp: ENSP00000262419.6:p.Ser832Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2495C>A
  hgvsp: ENSP00000461812.1:p.Ser832Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6712C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.467C>A
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser832Tyr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

17-44115955-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115955
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115955
    reference: chr 17
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6707A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2490A>G
  hgvsp: ENST00000572904.1:c.2490A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2490A>G
  hgvsp: ENST00000574590.1:c.2490A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.372A>G
  hgvsp: ENST00000393476.3:c.372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.462A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2301A>G
  hgvsp: ENST00000575318.1:c.2301A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2490A>G
  hgvsp: ENST00000262419.6:c.2490A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.346A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2490A>G
  hgvsp: ENST00000432791.1:c.2490A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.129A>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28288
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser830Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

17-44115964-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115964
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115964
    reference: chr 17
allele count: 78
allele frequency: 6.429171955622229e-4
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2481C>T
  hgvsp: ENST00000572904.1:c.2481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2481C>T
  hgvsp: ENST00000432791.1:c.2481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.363C>T
  hgvsp: ENST00000393476.3:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2292C>T
  hgvsp: ENST00000575318.1:c.2292C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.453C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2481C>T
  hgvsp: ENST00000262419.6:c.2481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2481C>T
  hgvsp: ENST00000574590.1:c.2481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.337C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.120C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6698C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 28191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser827Ser
num of homozygotes: 1
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

17-44115965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115965
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115965
    reference: chr 17
allele count: 4
allele frequency: 3.296793867963405e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6697C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2480C>T
  hgvsp: ENSP00000387393.1:p.Ser827Phe
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2291C>T
  hgvsp: ENSP00000461299.1:p.Ser764Phe
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2480C>T
  hgvsp: ENSP00000461484.1:p.Ser827Phe
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.452C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.336C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2480C>T
  hgvsp: ENSP00000461812.1:p.Ser827Phe
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.362C>T
  hgvsp: ENSP00000377117.3:p.Ser121Phe
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.119C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2480C>T
  hgvsp: ENSP00000262419.6:p.Ser827Phe
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser827Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

17-44115965-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115965
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115965
    reference: chr 17
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2480C>A
  hgvsp: ENSP00000262419.6:p.Ser827Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.362C>A
  hgvsp: ENSP00000377117.3:p.Ser121Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2480C>A
  hgvsp: ENSP00000387393.1:p.Ser827Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2480C>A
  hgvsp: ENSP00000461812.1:p.Ser827Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6697C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.336C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.119C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2291C>A
  hgvsp: ENSP00000461299.1:p.Ser764Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.452C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2480C>A
  hgvsp: ENSP00000461484.1:p.Ser827Tyr
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser827Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

17-44115965-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115965
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115965
    reference: chr 17
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.362C>G
  hgvsp: ENSP00000377117.3:p.Ser121Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2480C>G
  hgvsp: ENSP00000262419.6:p.Ser827Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6697C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.452C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.336C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2291C>G
  hgvsp: ENSP00000461299.1:p.Ser764Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2480C>G
  hgvsp: ENSP00000387393.1:p.Ser827Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.119C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2480C>G
  hgvsp: ENSP00000461812.1:p.Ser827Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2480C>G
  hgvsp: ENSP00000461484.1:p.Ser827Cys
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser827Cys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-44115967-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115967
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115967
    reference: chr 17
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.334C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2478C>G
  hgvsp: ENST00000574590.1:c.2478C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2478C>G
  hgvsp: ENST00000262419.6:c.2478C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6695C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2478C>G
  hgvsp: ENST00000432791.1:c.2478C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.360C>G
  hgvsp: ENST00000393476.3:c.360C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2478C>G
  hgvsp: ENST00000572904.1:c.2478C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2289C>G
  hgvsp: ENST00000575318.1:c.2289C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.450C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.117C>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu826Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/17-44115981-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115981
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115981
    reference: chr 17
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2464T>G
  hgvsp: ENSP00000461812.1:p.Leu822Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.320T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6681T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.436T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.346T>G
  hgvsp: ENSP00000377117.3:p.Leu116Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2464T>G
  hgvsp: ENSP00000461484.1:p.Leu822Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2464T>G
  hgvsp: ENSP00000387393.1:p.Leu822Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2275T>G
  hgvsp: ENSP00000461299.1:p.Leu759Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2464T>G
  hgvsp: ENSP00000262419.6:p.Leu822Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.103T>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu822Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-44115982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115982
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115982
    reference: chr 17
allele count: 3
allele frequency: 2.471536142096851e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2463C>T
  hgvsp: ENST00000262419.6:c.2463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6680C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2463C>T
  hgvsp: ENST00000572904.1:c.2463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2463C>T
  hgvsp: ENST00000432791.1:c.2463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.435C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.345C>T
  hgvsp: ENST00000393476.3:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2463C>T
  hgvsp: ENST00000574590.1:c.2463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2274C>T
  hgvsp: ENST00000575318.1:c.2274C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.102C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.319C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro821Pro
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-44115984-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115984
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115984
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2461C>G
  hgvsp: ENSP00000262419.6:p.Pro821Ala
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.343C>G
  hgvsp: ENSP00000377117.3:p.Pro115Ala
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.100C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6678C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2272C>G
  hgvsp: ENSP00000461299.1:p.Pro758Ala
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2461C>G
  hgvsp: ENSP00000461812.1:p.Pro821Ala
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.317C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.433C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2461C>G
  hgvsp: ENSP00000387393.1:p.Pro821Ala
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2461C>G
  hgvsp: ENSP00000461484.1:p.Pro821Ala
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro821Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-44115990-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115990
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115990
    reference: chr 17
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2455C>G
  hgvsp: ENSP00000461812.1:p.His819Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2455C>G
  hgvsp: ENSP00000387393.1:p.His819Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.94C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6672C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2455C>G
  hgvsp: ENSP00000461484.1:p.His819Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2455C>G
  hgvsp: ENSP00000262419.6:p.His819Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.311C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.337C>G
  hgvsp: ENSP00000377117.3:p.His113Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2266C>G
  hgvsp: ENSP00000461299.1:p.His756Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.427C>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His819Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

17-44115996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44115996
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44115996
    reference: chr 17
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2449C>T
  hgvsp: ENSP00000387393.1:p.Pro817Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.421C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2449C>T
  hgvsp: ENSP00000262419.6:p.Pro817Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2449C>T
  hgvsp: ENSP00000461484.1:p.Pro817Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2260C>T
  hgvsp: ENSP00000461299.1:p.Pro754Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.331C>T
  hgvsp: ENSP00000377117.3:p.Pro111Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2449C>T
  hgvsp: ENSP00000461812.1:p.Pro817Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.88C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6666C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.305C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro817Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-44116000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116000
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116000
    reference: chr 17
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2445C>T
  hgvsp: ENST00000262419.6:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.417C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2445C>T
  hgvsp: ENST00000572904.1:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.327C>T
  hgvsp: ENST00000393476.3:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2445C>T
  hgvsp: ENST00000432791.1:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6662C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2256C>T
  hgvsp: ENST00000575318.1:c.2256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.84C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2445C>T
  hgvsp: ENST00000574590.1:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.301C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His815His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-44116004-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116004
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116004
    reference: chr 17
allele count: 5
allele frequency: 4.118751853438334e-5
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2441C>G
  hgvsp: ENSP00000461812.1:p.Thr814Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.323C>G
  hgvsp: ENSP00000377117.3:p.Thr108Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2252C>G
  hgvsp: ENSP00000461299.1:p.Thr751Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.80C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2441C>G
  hgvsp: ENSP00000387393.1:p.Thr814Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2441C>G
  hgvsp: ENSP00000262419.6:p.Thr814Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.413C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2441C>G
  hgvsp: ENSP00000461484.1:p.Thr814Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6658C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.297C>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr814Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

17-44116008-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116008
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116008
    reference: chr 17
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2437G>A
  hgvsp: ENSP00000461812.1:p.Ala813Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.409G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2248G>A
  hgvsp: ENSP00000461299.1:p.Ala750Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2437G>A
  hgvsp: ENSP00000387393.1:p.Ala813Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.76G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2437G>A
  hgvsp: ENSP00000461484.1:p.Ala813Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.319G>A
  hgvsp: ENSP00000377117.3:p.Ala107Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.293G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6654G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2437G>A
  hgvsp: ENSP00000262419.6:p.Ala813Thr
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala813Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

17-44116021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116021
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116021
    reference: chr 17
allele count: 6
allele frequency: 4.942257952916756e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2424G>A
  hgvsp: ENST00000572904.1:c.2424G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2424G>A
  hgvsp: ENST00000574590.1:c.2424G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2424G>A
  hgvsp: ENST00000432791.1:c.2424G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.396G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.306G>A
  hgvsp: ENST00000393476.3:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2235G>A
  hgvsp: ENST00000575318.1:c.2235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.280G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.63G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2424G>A
  hgvsp: ENST00000262419.6:c.2424G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6641G>A
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser808Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-44116022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116022
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116022
    reference: chr 17
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.305C>T
  hgvsp: ENSP00000377117.3:p.Ser102Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2423C>T
  hgvsp: ENSP00000461812.1:p.Ser808Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.395C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2234C>T
  hgvsp: ENSP00000461299.1:p.Ser745Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2423C>T
  hgvsp: ENSP00000461484.1:p.Ser808Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.62C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.279C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2423C>T
  hgvsp: ENSP00000262419.6:p.Ser808Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2423C>T
  hgvsp: ENSP00000387393.1:p.Ser808Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6640C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser808Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

17-44116028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116028
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116028
    reference: chr 17
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2417G>A
  hgvsp: ENSP00000461812.1:p.Ser806Asn
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2417G>A
  hgvsp: ENSP00000387393.1:p.Ser806Asn
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2228G>A
  hgvsp: ENSP00000461299.1:p.Ser743Asn
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2417G>A
  hgvsp: ENSP00000461484.1:p.Ser806Asn
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.299G>A
  hgvsp: ENSP00000377117.3:p.Ser100Asn
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.56G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.273G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.389G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6634G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2417G>A
  hgvsp: ENSP00000262419.6:p.Ser806Asn
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.549G>A
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser806Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

17-44116031-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116031
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116031
    reference: chr 17
allele count: 10
allele frequency: 8.237639422047218e-5
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2414T>C
  hgvsp: ENSP00000387393.1:p.Met805Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.296T>C
  hgvsp: ENSP00000377117.3:p.Met99Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.270T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2414T>C
  hgvsp: ENSP00000461484.1:p.Met805Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2225T>C
  hgvsp: ENSP00000461299.1:p.Met742Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2414T>C
  hgvsp: ENSP00000262419.6:p.Met805Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.386T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2414T>C
  hgvsp: ENSP00000461812.1:p.Met805Thr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.546T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.53T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6631T>C
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met805Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-44116032-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116032
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116032
    reference: chr 17
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2413A>G
  hgvsp: ENSP00000387393.1:p.Met805Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6630A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2224A>G
  hgvsp: ENSP00000461299.1:p.Met742Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2413A>G
  hgvsp: ENSP00000262419.6:p.Met805Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.52A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2413A>G
  hgvsp: ENSP00000461812.1:p.Met805Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.545A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.385A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.295A>G
  hgvsp: ENSP00000377117.3:p.Met99Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2413A>G
  hgvsp: ENSP00000461484.1:p.Met805Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.269A>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met805Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

17-44116039-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116039
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116039
    reference: chr 17
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2406C>A
  hgvsp: ENSP00000461484.1:p.His802Gln
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2406C>A
  hgvsp: ENSP00000461812.1:p.His802Gln
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.378C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6623C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.538C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.288C>A
  hgvsp: ENSP00000377117.3:p.His96Gln
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.262C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2217C>A
  hgvsp: ENSP00000461299.1:p.His739Gln
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.45C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2406C>A
  hgvsp: ENSP00000262419.6:p.His802Gln
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2406C>A
  hgvsp: ENSP00000387393.1:p.His802Gln
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His802Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

17-44116049-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116049
    reference: chr 17
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2396T>C
  hgvsp: ENSP00000461484.1:p.Leu799Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2396T>C
  hgvsp: ENSP00000461812.1:p.Leu799Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.278T>C
  hgvsp: ENSP00000377117.3:p.Leu93Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.252T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2207T>C
  hgvsp: ENSP00000461299.1:p.Leu736Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.35T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6613T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2396T>C
  hgvsp: ENSP00000387393.1:p.Leu799Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2396T>C
  hgvsp: ENSP00000262419.6:p.Leu799Ser
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.528T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.368T>C
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu799Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

17-44116058-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116058
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116058
    reference: chr 17
allele count: 3
allele frequency: 2.474145182839329e-5
allele num: 121254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-6C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-6C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-6C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-6C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-6C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-6C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-6C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-6C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.26C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-6C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-6C>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2393-6C>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

17-44116066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116066
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116066
    reference: chr 17
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-14G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-14G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-14G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-14G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-14G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-14G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-14G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-14G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.18G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-14G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-14G>A
  variant of: http://identifiers.org/hgnc/24565
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-44116068-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116068
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116068
    reference: chr 17
allele count: 2
allele frequency: 1.650355651642929e-5
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-16C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-16C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/17-44116069-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116069
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116069
    reference: chr 17
allele count: 2
allele frequency: 1.650355651642929e-5
allele num: 121186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-17T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-17T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-17T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.15T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-17T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-17T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-17T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-17T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-17T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-17T>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-17T>G
  variant of: http://identifiers.org/hgnc/24565
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24936
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-44116075-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116075
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116075
    reference: chr 17
allele count: 2
allele frequency: 1.650655310158133e-5
allele num: 121164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.9C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-23C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-23C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-23C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-23C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-23C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-23C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-23C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-23C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-23C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-23C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

17-44116076-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116076
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116076
    reference: chr 17
allele count: 5
allele frequency: 4.127523980914329e-5
allele num: 121138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-24T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-24T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-24T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-24T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-24T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-24T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-24T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-24T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.8T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-24T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-24T>C
  variant of: http://identifiers.org/hgnc/24565
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8646
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

17-44116081-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116081
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116081
    reference: chr 17
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-29A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-29A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.3A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-29A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-29A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-29A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-29A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-29A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-29A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-29A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-29A>G
  variant of: http://identifiers.org/hgnc/24565
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

17-44116082-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116082
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116082
    reference: chr 17
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-30T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-30T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-30T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-30T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-30T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.2T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-30T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-30T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-30T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-30T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-30T>C
  variant of: http://identifiers.org/hgnc/24565
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-44116082-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116082
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116082
    reference: chr 17
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-30T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-30T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-30T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-30T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576137
  gene symbol: KANSL1
  hgvsc: ENST00000576137.1:n.2T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-30T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-30T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-30T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-30T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-30T>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-30T>A
  variant of: http://identifiers.org/hgnc/24565
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26298
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-44116085-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116085
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116085
    reference: chr 17
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-33A>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

17-44116101-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116101
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116101
    reference: chr 17
allele count: 3
allele frequency: 2.488016055996948e-5
allele num: 120578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-49G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-49G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-49G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-49G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-49G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-49G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-49G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-49G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-49G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-49G>A
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4611
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-44116102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116102
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116102
    reference: chr 17
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-50C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.249-50C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2393-50C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2393-50C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-50C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-50C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2393-50C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6610-50C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2393-50C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.525-50C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-44116347-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116347
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116347
    reference: chr 17
allele count: 3
allele frequency: 2.473533194815474e-5
allele num: 121284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-295A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+46A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+46A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+46A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-295A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+46A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+46A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-295A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+46A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+46A>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS

17-44116348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116348
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116348
    reference: chr 17
allele count: 8
allele frequency: 6.595870984763538e-5
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+45C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-296C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+45C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+45C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-296C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+45C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+45C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-296C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+45C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+45C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-44116350-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116350
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116350
    reference: chr 17
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+43C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-298C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+43C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+43C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-298C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-298C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+43C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+43C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+43C>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+43C>A
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/17-44116351-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116351
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116351
    reference: chr 17
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+42G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+42G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+42G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+42G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+42G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-299G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+42G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-299G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-299G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+42G>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

17-44116353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116353
    reference: chr 17
allele count: 2
allele frequency: 1.648886177387175e-5
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+40C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+40C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-301C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+40C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+40C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+40C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+40C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+40C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-301C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-301C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-44116359-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116359
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116359
    reference: chr 17
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-307C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+34C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+34C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+34C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-307C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+34C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+34C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-307C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+34C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+34C>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

17-44116360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116360
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116360
    reference: chr 17
allele count: 2
allele frequency: 1.648777431534517e-5
allele num: 121302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-308A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-308A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-308A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+33A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+33A>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

17-44116374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116374
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116374
    reference: chr 17
allele count: 3
allele frequency: 2.47222863170386e-5
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+19C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+19C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+19C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+19C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+19C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+19C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-322C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-322C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+19C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-322C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

17-44116378-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116378
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116378
    reference: chr 17
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+15A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+15A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-326A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+15A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-326A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+15A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+15A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+15A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+15A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-326A>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

17-44116378-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116378
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116379
    reference: chr 17
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+14dupC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+14dupC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+14dupC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-327dupC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+14dupC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+14dupC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-327dupC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-327dupC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+14dupC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+14dupC
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

17-44116385-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116385
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116385
    reference: chr 17
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-333C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-333C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+8C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+8C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+8C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+8C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-333C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+8C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+8C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+8C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10254
  bin: 6.75e1
  variant carriers: 0
hgvs: c.2392+8C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-44116386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116386
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116386
    reference: chr 17
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2392+7C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-334C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2392+7C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.524+7C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2392+7C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2392+7C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.248+7C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6609+7C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-334C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-334C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: c.2392+7C>T
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

17-44116423-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116423
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116423
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.218T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2362T>C
  hgvsp: ENST00000572904.1:c.2362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2362T>C
  hgvsp: ENST00000432791.1:c.2362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6579T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-371T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.494T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-371T>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2362T>C
  hgvsp: ENST00000574590.1:c.2362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2362T>C
  hgvsp: ENST00000262419.6:c.2362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-371T>C
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu788Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

17-44116427-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116427
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116427
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.490G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.214G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-375G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2358G>C
  hgvsp: ENSP00000262419.6:p.Met786Ile
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2358G>C
  hgvsp: ENSP00000387393.1:p.Met786Ile
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6575G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-375G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2358G>C
  hgvsp: ENSP00000461812.1:p.Met786Ile
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-375G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2358G>C
  hgvsp: ENSP00000461484.1:p.Met786Ile
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met786Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

17-44116441-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116441
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116441
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2344A>T
  hgvsp: ENSP00000262419.6:p.Asn782Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-389A>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.200A>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.476A>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-389A>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2344A>T
  hgvsp: ENSP00000387393.1:p.Asn782Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2344A>T
  hgvsp: ENSP00000461812.1:p.Asn782Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2344A>T
  hgvsp: ENSP00000461484.1:p.Asn782Tyr
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6561A>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-389A>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn782Tyr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

17-44116451-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116451
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116451
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-399G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.190G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-399G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2334G>C
  hgvsp: ENST00000572904.1:c.2334G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6551G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2334G>C
  hgvsp: ENST00000574590.1:c.2334G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2334G>C
  hgvsp: ENST00000262419.6:c.2334G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.466G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-399G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2334G>C
  hgvsp: ENST00000432791.1:c.2334G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val778Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-44116454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116454
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116454
    reference: chr 17
allele count: 7
allele frequency: 5.765587678115476e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2331C>T
  hgvsp: ENST00000262419.6:c.2331C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.187C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2331C>T
  hgvsp: ENST00000572904.1:c.2331C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2331C>T
  hgvsp: ENST00000432791.1:c.2331C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2331C>T
  hgvsp: ENST00000574590.1:c.2331C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-402C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-402C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.463C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6548C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-402C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro777Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

17-44116454-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116454
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116454
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.463C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6548C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2331C>G
  hgvsp: ENST00000574590.1:c.2331C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-402C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2331C>G
  hgvsp: ENST00000262419.6:c.2331C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2331C>G
  hgvsp: ENST00000432791.1:c.2331C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2331C>G
  hgvsp: ENST00000572904.1:c.2331C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-402C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-402C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.187C>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro777Pro
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-44116463-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116463
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116463
    reference: chr 17
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.178A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-411A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.454A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2322A>G
  hgvsp: ENST00000574590.1:c.2322A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2322A>G
  hgvsp: ENST00000262419.6:c.2322A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-411A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-411A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2322A>G
  hgvsp: ENST00000432791.1:c.2322A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2322A>G
  hgvsp: ENST00000572904.1:c.2322A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6539A>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro774Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

17-44116463-TGGGTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116463
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116457
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2316_2321delCAACCC
  hgvsp: ENSP00000387393.1:p.Asn773_Pro774del
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2316_2321delCAACCC
  hgvsp: ENSP00000461812.1:p.Asn773_Pro774del
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2316_2321delCAACCC
  hgvsp: ENSP00000262419.6:p.Asn773_Pro774del
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-417_275-412delCAACCC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.448_453delCAACCC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6533_6538delCAACCC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-417_365-412delCAACCC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.172_177delCAACCC
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2316_2321delCAACCC
  hgvsp: ENSP00000461484.1:p.Asn773_Pro774del
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-417_2204-412delCAACCC
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn773_Pro774del
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: TGGGTTG
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-44116469-G-GCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116469
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116471
    reference: chr 17
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: GCA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.171_172insTG
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2315_2316insTG
  hgvsp: ENSP00000262419.6:p.Asn773AlafsTer15
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.447_448insTG
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-418_365-417insTG
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2315_2316insTG
  hgvsp: ENSP00000461812.1:p.Asn773AlafsTer15
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2315_2316insTG
  hgvsp: ENSP00000387393.1:p.Asn773AlafsTer15
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6532_6533insTG
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-418_275-417insTG
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2315_2316insTG
  hgvsp: ENSP00000461484.1:p.Asn773AlafsTer15
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-418_2204-417insTG
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn773AlafsTer15
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

17-44116469-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116469
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116469
    reference: chr 17
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-417C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2316C>G
  hgvsp: ENST00000574590.1:c.2316C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2316C>G
  hgvsp: ENST00000262419.6:c.2316C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.448C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2316C>G
  hgvsp: ENST00000432791.1:c.2316C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2316C>G
  hgvsp: ENST00000572904.1:c.2316C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.172C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-417C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-417C>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6533C>G
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu772Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-44116476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116476
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116476
    reference: chr 17
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-424G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2309G>A
  hgvsp: ENSP00000262419.6:p.Arg770His
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2309G>A
  hgvsp: ENSP00000461812.1:p.Arg770His
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2309G>A
  hgvsp: ENSP00000387393.1:p.Arg770His
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.165G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2309G>A
  hgvsp: ENSP00000461484.1:p.Arg770His
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-424G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.441G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6526G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-424G>A
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg770His
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

17-44116477-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116477
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116477
    reference: chr 17
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2308C>T
  hgvsp: ENSP00000387393.1:p.Arg770Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-425C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.440C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2308C>T
  hgvsp: ENSP00000461484.1:p.Arg770Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.164C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6525C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2308C>T
  hgvsp: ENSP00000461812.1:p.Arg770Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-425C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2308C>T
  hgvsp: ENSP00000262419.6:p.Arg770Cys
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-425C>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg770Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-44116487-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116487
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116487
    reference: chr 17
allele count: 8
allele frequency: 6.590654451987082e-5
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6515A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2298A>G
  hgvsp: ENST00000574590.1:c.2298A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.154A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.430A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-435A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-435A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2298A>G
  hgvsp: ENST00000432791.1:c.2298A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-435A>G
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2298A>G
  hgvsp: ENST00000572904.1:c.2298A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2298A>G
  hgvsp: ENST00000262419.6:c.2298A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro766Pro
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-44116491-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116491
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116491
    reference: chr 17
allele count: 68
allele frequency: 5.602887134782394e-4
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2294C>T
  hgvsp: ENSP00000387393.1:p.Ala765Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.426C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-439C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6511C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2294C>T
  hgvsp: ENSP00000461484.1:p.Ala765Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.150C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-439C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2294C>T
  hgvsp: ENSP00000262419.6:p.Ala765Val
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-439C>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2294C>T
  hgvsp: ENSP00000461812.1:p.Ala765Val
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25599
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala765Val
num of homozygotes: 1
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/17-44116498-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116498
    reference: chr 17
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6504G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2287G>T
  hgvsp: ENSP00000461484.1:p.Val763Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2287G>T
  hgvsp: ENSP00000262419.6:p.Val763Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2287G>T
  hgvsp: ENSP00000461812.1:p.Val763Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-446G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.143G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2287G>T
  hgvsp: ENSP00000387393.1:p.Val763Leu
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.419G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-446G>T
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-446G>T
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val763Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

17-44116500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116500
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116500
    reference: chr 17
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2285G>A
  hgvsp: ENSP00000461484.1:p.Arg762Gln
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.141G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-448G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2285G>A
  hgvsp: ENSP00000387393.1:p.Arg762Gln
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.417G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6502G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2285G>A
  hgvsp: ENSP00000262419.6:p.Arg762Gln
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-448G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-448G>A
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2285G>A
  hgvsp: ENSP00000461812.1:p.Arg762Gln
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10267
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg762Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

17-44116502-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44116502
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 44116502
    reference: chr 17
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000377117
  ensembl transcript: ENST00000393476
  gene symbol: KANSL1
  hgvsc: ENST00000393476.3:c.275-450G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000576870
  gene symbol: KANSL1
  hgvsc: ENST00000576870.1:n.365-450G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461484
  ensembl transcript: ENST00000572904
  gene symbol: KANSL1
  hgvsc: ENST00000572904.1:c.2283G>C
  hgvsp: ENSP00000461484.1:p.Glu761Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461299
  ensembl transcript: ENST00000575318
  gene symbol: KANSL1
  hgvsc: ENST00000575318.1:c.2204-450G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000461812
  ensembl transcript: ENST00000574590
  gene symbol: KANSL1
  hgvsc: ENST00000574590.1:c.2283G>C
  hgvsp: ENSP00000461812.1:p.Glu761Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000262419
  ensembl transcript: ENST00000262419
  gene symbol: KANSL1
  hgvsc: ENST00000262419.6:c.2283G>C
  hgvsp: ENSP00000262419.6:p.Glu761Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000573286
  gene symbol: KANSL1
  hgvsc: ENST00000573286.1:n.139G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000120071
  ensembl protein: ENSP00000387393
  ensembl transcript: ENST00000432791
  gene symbol: KANSL1
  hgvsc: ENST00000432791.1:c.2283G>C
  hgvsp: ENSP00000387393.1:p.Glu761Asp
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572218
  gene symbol: KANSL1
  hgvsc: ENST00000572218.1:n.6500G>C
  variant of: http://identifiers.org/hgnc/24565
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000120071
  ensembl transcript: ENST00000572679
  gene symbol: KANSL1
  hgvsc: ENST00000572679.1:n.415G>C
  variant of: http://identifiers.org/hgnc/24565
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu761Asp
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3255
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8204
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

DP
type: SiteQuality
SIO_000300: 1.803217e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

QD
type: SiteQuality
SIO_000300: 8.27e0

GenotypeQuality
all individuals: 8218
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

FS
type: SiteQuality
SIO_000300: 2.409e0

QD
type: SiteQuality
SIO_000300: 1.652e1

MQRankSum
type: SiteQuality
SIO_000300: -6.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.087e0

DP
type: SiteQuality
SIO_000300: 1.80958e6

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8215
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28590
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501501501501501e-5
allele num: 66600
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.378e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

DP
type: SiteQuality
SIO_000300: 1.811629e6

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.996e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

QD
type: SiteQuality
SIO_000300: 1.266e1

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8218
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.164e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 2.131e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

DP
type: SiteQuality
SIO_000300: 1.81193e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27915
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1904
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3567
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.951000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

QD
type: SiteQuality
SIO_000300: 5.0e-1

FS
type: SiteQuality
SIO_000300: 4.0179e1

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
SIO_000300: 1.825124e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.542e0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8455
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4607
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e0

FS
type: SiteQuality
SIO_000300: 2.486e0

DP
type: SiteQuality
SIO_000300: 1.827409e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.496e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.477e0

QD
type: SiteQuality
SIO_000300: 1.231e1

VQSLOD
type: SiteQuality
SIO_000300: -3.093e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8140
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8475
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28248
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4629
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.28e-1

FS
type: SiteQuality
SIO_000300: 8.558e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.122e0

QD
type: SiteQuality
SIO_000300: 1.066e1

VQSLOD
type: SiteQuality
SIO_000300: -3.29e-2

DP
type: SiteQuality
SIO_000300: 1.830879e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

GenotypeQuality
all individuals: 8162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.512e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 1.694e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.832483e6

GenotypeQuality
all individuals: 3457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8630
bin: 9.75e1
variant carriers: 77

GenotypeQuality
all individuals: 3723
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.66747484543581e-4
allele num: 16498
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.067961165048543e-4
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 61
allele frequency: 9.143782228084903e-4
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.746e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

DP
type: SiteQuality
SIO_000300: 1.839828e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.282e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

GenotypeQuality
all individuals: 28174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8606
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3728
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.847e0

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 5.86e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.283e1

DP
type: SiteQuality
SIO_000300: 1.838548e6

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8606
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.847e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.82e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

FS
type: SiteQuality
SIO_000300: 5.86e-1

DP
type: SiteQuality
SIO_000300: 1.838548e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3728
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8606
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.82e-1

DP
type: SiteQuality
SIO_000300: 1.838548e6

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

FS
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.847e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

GenotypeQuality
all individuals: 46
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28189
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8174
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8610
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.901e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.255e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

QD
type: SiteQuality
SIO_000300: 1.635e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.838848e6

MQ
type: SiteQuality
SIO_000300: 5.859e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8621
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

FS
type: SiteQuality
SIO_000300: 8.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.49e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.840658e6

GenotypeQuality
all individuals: 3475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4659
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28233
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8624
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1673
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1613e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.985e0

DP
type: SiteQuality
SIO_000300: 1.840855e6

QD
type: SiteQuality
SIO_000300: 2.475e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.139e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28251
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4662
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8627
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2027
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8199
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.535e1

DP
type: SiteQuality
SIO_000300: 1.840899e6

VQSLOD
type: SiteQuality
SIO_000300: -1.637e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 1.2314e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.15e-1

GenotypeQuality
all individuals: 3740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8627
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

QD
type: SiteQuality
SIO_000300: 9.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.683e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: -9.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.841043e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.461e0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28250
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8630
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8201
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e-1

DP
type: SiteQuality
SIO_000300: 1.841274e6

FS
type: SiteQuality
SIO_000300: 4.273e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.002e1

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8628
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4659
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.35e-1

FS
type: SiteQuality
SIO_000300: 2.697e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.841201e6

QD
type: SiteQuality
SIO_000300: 1.174e1

VQSLOD
type: SiteQuality
SIO_000300: -7.325e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.373e0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8632
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49265719594797e-5
allele num: 66732
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

FS
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.841473e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

QD
type: SiteQuality
SIO_000300: 1.435e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8631
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.73e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.095e1

MQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

DP
type: SiteQuality
SIO_000300: 1.841376e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.683e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4658
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8635
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 8208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993946114424431e-5
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.841893e6

FS
type: SiteQuality
SIO_000300: 4.993e0

QD
type: SiteQuality
SIO_000300: 1.132e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8634
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4660
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.859e0

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.604e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.109999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 1.841695e6

GenotypeQuality
all individuals: 8634
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28228
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.712e0

FS
type: SiteQuality
SIO_000300: 5.373e0

VQSLOD
type: SiteQuality
SIO_000300: -5.417e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.841741e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.915e0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28229
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8642
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 8204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.155535012710885e-3
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.842265e6

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 5.011e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

QD
type: SiteQuality
SIO_000300: 1.284e1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28223
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8641
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 1.841872e6

VQSLOD
type: SiteQuality
SIO_000300: -1.79e-2

FS
type: SiteQuality
SIO_000300: 1.0768e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.21e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.547e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.435e0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4659
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.657e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 1.533e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e-1

DP
type: SiteQuality
SIO_000300: 1.841518e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.257e0

GenotypeQuality
all individuals: 4657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8642
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1667
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998500749625187e-5
allele num: 66700
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.116e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.346e1

DP
type: SiteQuality
SIO_000300: 1.840484e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8644
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500045000450004e-5
allele num: 66666
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.838053e6

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

FS
type: SiteQuality
SIO_000300: 2.408e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8643
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.224e0

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.607e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.835118e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 8052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8643
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27275
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001110410852015e-5
allele num: 66642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.111e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.629e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.832396e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.95e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4627
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8643
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 1
allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

DP
type: SiteQuality
SIO_000300: 1.83218e6

FS
type: SiteQuality
SIO_000300: 3.019e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

GenotypeQuality
all individuals: 4627
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8642
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.104260774020266e-5
allele num: 16382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.93e-1

DP
type: SiteQuality
SIO_000300: 1.828871e6

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 2.064e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.172e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27023
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4627
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001741009785676e-5
allele num: 66628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.327e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

DP
type: SiteQuality
SIO_000300: 1.827934e6

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7934
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3468
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26254
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8646
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12294881214793e-5
allele num: 16332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.892e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.821291e6

FS
type: SiteQuality
SIO_000300: 7.262e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e0

QD
type: SiteQuality
SIO_000300: 1.463e1

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4628
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8648
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.119951040391677e-5
allele num: 16340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.248e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.821362e6

FS
type: SiteQuality
SIO_000300: 7.671e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeQuality
all individuals: 3708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4628
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8648
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3467
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.248e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 7.671e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e0

DP
type: SiteQuality
SIO_000300: 1.821362e6

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25913
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7897
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8649
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4622
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

QD
type: SiteQuality
SIO_000300: 1.049e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

DP
type: SiteQuality
SIO_000300: 1.817734e6

GenotypeQuality
all individuals: 3682
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8653
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.25312656328164e-5
allele num: 15992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.978e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.478e0

DP
type: SiteQuality
SIO_000300: 1.804446e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

QD
type: SiteQuality
SIO_000300: 1.306e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 997
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23056
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8660
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.407e1

DP
type: SiteQuality
SIO_000300: 1.804479e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 9.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3386
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2917
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500180007200288e-5
allele num: 66664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

DP
type: SiteQuality
SIO_000300: 1.88505e6

QD
type: SiteQuality
SIO_000300: 1.323e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.56e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10235
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.244280101687081e-4
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.236e1

DP
type: SiteQuality
SIO_000300: 1.885315e6

FS
type: SiteQuality
SIO_000300: 4.843e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.341e0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37231
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10242
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.07e0

QD
type: SiteQuality
SIO_000300: 1.106e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 1.885375e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.471e0

MQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37234
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

DP
type: SiteQuality
SIO_000300: 1.88609e6

QD
type: SiteQuality
SIO_000300: 1.165e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.716e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.377e0

VQSLOD
type: SiteQuality
SIO_000300: 8.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.283e1

FS
type: SiteQuality
SIO_000300: 5.411e0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

DP
type: SiteQuality
SIO_000300: 1.886479e6

GenotypeQuality
all individuals: 10237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.97e-1

FS
type: SiteQuality
SIO_000300: 3.397e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.219e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.888323e6

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

FS
type: SiteQuality
SIO_000300: 6.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.888394e6

QD
type: SiteQuality
SIO_000300: 1.152e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 10249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.196e1

FS
type: SiteQuality
SIO_000300: 2.983e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.705e0

DP
type: SiteQuality
SIO_000300: 1.890874e6

MQRankSum
type: SiteQuality
SIO_000300: -1.298e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.044e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3365
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99895036737142e-5
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

DP
type: SiteQuality
SIO_000300: 1.891257e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3365
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.891257e6

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 1.175e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 2898
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38136
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.846e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.174e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

DP
type: SiteQuality
SIO_000300: 1.891456e6

GenotypeQuality
all individuals: 1768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38138
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.339e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.172e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 4.868e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

DP
type: SiteQuality
SIO_000300: 1.891472e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

GenotypeQuality
all individuals: 10262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.932e0

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 7.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.657e-1

MQ
type: SiteQuality
SIO_000300: 5.302e1

DP
type: SiteQuality
SIO_000300: 1.892394e6

QD
type: SiteQuality
SIO_000300: 1.15e1

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3359
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

FS
type: SiteQuality
SIO_000300: 2.363e0

VQSLOD
type: SiteQuality
SIO_000300: -4.557e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.43e-1

QD
type: SiteQuality
SIO_000300: 1.432e1

DP
type: SiteQuality
SIO_000300: 1.89214e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38199
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.019e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.26e-1

QD
type: SiteQuality
SIO_000300: 1.539e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.045e0

DP
type: SiteQuality
SIO_000300: 1.892112e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeQuality
all individuals: 2894
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.892042e6

MQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.097e0

QD
type: SiteQuality
SIO_000300: 1.543e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.437e0

FS
type: SiteQuality
SIO_000300: 3.381e0

VQSLOD
type: SiteQuality
SIO_000300: -1.269e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.491983577571999e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

DP
type: SiteQuality
SIO_000300: 1.892504e6

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

QD
type: SiteQuality
SIO_000300: 1.38e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

DP
type: SiteQuality
SIO_000300: 1.892504e6

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3349
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

QD
type: SiteQuality
SIO_000300: 1.105e1

DP
type: SiteQuality
SIO_000300: 1.891804e6

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

FS
type: SiteQuality
SIO_000300: 2.576e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3349
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.105e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.891804e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

FS
type: SiteQuality
SIO_000300: 2.576e0

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 1.891496e6

QD
type: SiteQuality
SIO_000300: 1.14e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

FS
type: SiteQuality
SIO_000300: 1.846e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 1.846e0

QD
type: SiteQuality
SIO_000300: 1.14e1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 1.891496e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38182
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3342
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

FS
type: SiteQuality
SIO_000300: 3.6e0

QD
type: SiteQuality
SIO_000300: 1.192e1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.891307e6

GenotypeQuality
all individuals: 38185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3341
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496133325340207e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.521e0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.816e0

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

DP
type: SiteQuality
SIO_000300: 1.891123e6

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.993884158772035e-5
allele num: 66712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.235e1

DP
type: SiteQuality
SIO_000300: 1.891088e6

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38141
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 9.75e1
variant carriers: 67

GenotypeQuality
all individuals: 10257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.058361052313275e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 49
allele frequency: 7.346326836581709e-4
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.637070305752289e-4
allele num: 11578
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 1.378e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 6.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.278e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

DP
type: SiteQuality
SIO_000300: 1.892311e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.361e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.266e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.489e0

DP
type: SiteQuality
SIO_000300: 1.88633e6

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

GenotypeQuality
all individuals: 3264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-1

FS
type: SiteQuality
SIO_000300: 4.701e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.886224e6