17-17788104-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17788104
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17788104
    reference: chr 17
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.367-5047A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.367-1927A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.217-5047A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.367-22A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.367-1927A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.367-22A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.217-22A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.301-22A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

17-17788107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17788107
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17788107
    reference: chr 17
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.367-1930C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.367-1930C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.367-5050C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.217-5050C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.217-25C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.367-25C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.367-25C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.301-25C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum

17-17788113-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17788113
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17788113
    reference: chr 17
allele count: 4
allele frequency: 3.298697014679201e-5
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.217-31A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.217-5056A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.367-1936A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.367-5056A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.367-31A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.367-1936A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.301-31A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.367-31A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48145
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-17788116-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17788116
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17788116
    reference: chr 17
allele count: 10
allele frequency: 8.247558722618105e-5
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.217-5059G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.217-34G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.367-34G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.367-1939G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.367-1939G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.367-5059G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.301-34G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.367-34G>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4240
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

17-17788129-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17788129
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17788129
    reference: chr 17
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.367-5072A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.367-47A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.217-47A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.367-1952A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.301-47A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.367-47A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.367-1952A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.217-5072A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-17796945-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17796945
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17796945
    reference: chr 17
allele count: 1
allele frequency: 8.469695429752346e-6
allele num: 118068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4965G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4965G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.366+30G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.366+30G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.366+30G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.366+30G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4965G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.366+30G>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12906
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5145
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/17-17796946-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17796946
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17796946
    reference: chr 17
allele count: 67
allele frequency: 5.670757511637748e-4
allele num: 118150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4964G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.366+29G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.366+29G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.366+29G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4964G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.366+29G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.366+29G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4964G>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17541
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

17-17796953-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17796953
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17796953
    reference: chr 17
allele count: 6
allele frequency: 5.063291139240507e-5
allele num: 118500
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.366+22A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.366+22A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4957A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4957A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.366+22A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4957A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.366+22A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.366+22A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12858
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-17796956-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17796956
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17796956
    reference: chr 17
allele count: 2
allele frequency: 1.685743665818176e-5
allele num: 118642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.366+19C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.366+19C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.366+19C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4954C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.366+19C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4954C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.366+19C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4954C>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

17-17796971-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17796971
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17796972
    reference: chr 17
allele count: 15
allele frequency: 1.25430645215239e-4
allele num: 119588
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.366+3dupA
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4938dupA
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.366+3dupA
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4938dupA
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.366+3dupA
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.366+3dupA
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4938dupA
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.366+3dupA
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: c.366+3dupA
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-17796994-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17796994
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17796994
    reference: chr 17
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.347A>G
  hgvsp: ENSP00000368818.3:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.347A>G
  hgvsp: ENSP00000437655.1:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4916A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.248A>G
  hgvsp: ENSP00000466863.1:p.Lys83Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.347A>G
  hgvsp: ENSP00000379088.4:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4916A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4916A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.347A>G
  hgvsp: ENSP00000438621.1:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.347A>G
  hgvsp: ENSP00000312860.10:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys116Arg
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

17-17796995-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17796995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17796995
    reference: chr 17
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4915A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4915A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.346A>G
  hgvsp: ENSP00000379088.4:p.Lys116Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.346A>G
  hgvsp: ENSP00000368818.3:p.Lys116Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.346A>G
  hgvsp: ENSP00000437655.1:p.Lys116Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.346A>G
  hgvsp: ENSP00000438621.1:p.Lys116Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.247A>G
  hgvsp: ENSP00000466863.1:p.Lys83Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.346A>G
  hgvsp: ENSP00000312860.10:p.Lys116Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4915A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys116Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

17-17796996-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17796996
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17796996
    reference: chr 17
allele count: 1
allele frequency: 8.290361625574107e-6
allele num: 120622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4914C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.345C>G
  hgvsp: ENSP00000379088.4:p.Asp115Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.345C>G
  hgvsp: ENSP00000437655.1:p.Asp115Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.345C>G
  hgvsp: ENSP00000312860.10:p.Asp115Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.345C>G
  hgvsp: ENSP00000438621.1:p.Asp115Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4914C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.246C>G
  hgvsp: ENSP00000466863.1:p.Asp82Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4914C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.345C>G
  hgvsp: ENSP00000368818.3:p.Asp115Glu
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7859
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp115Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

17-17797007-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797007
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797007
    reference: chr 17
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4903A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.235A>G
  hgvsp: ENSP00000466863.1:p.Ile79Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4903A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.334A>G
  hgvsp: ENSP00000379088.4:p.Ile112Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.334A>G
  hgvsp: ENSP00000438621.1:p.Ile112Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.334A>G
  hgvsp: ENSP00000368818.3:p.Ile112Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.334A>G
  hgvsp: ENSP00000437655.1:p.Ile112Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.334A>G
  hgvsp: ENSP00000312860.10:p.Ile112Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4903A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12839
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile112Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

17-17797008-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797008
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797008
    reference: chr 17
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.333C>G
  hgvsp: ENST00000318094.10:c.333C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.333C>G
  hgvsp: ENST00000395739.4:c.333C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.333C>G
  hgvsp: ENST00000540946.1:c.333C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.234C>G
  hgvsp: ENST00000579586.1:c.234C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4902C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4902C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4902C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.333C>G
  hgvsp: ENST00000379504.3:c.333C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.333C>G
  hgvsp: ENST00000535933.1:c.333C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7871
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr111Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

17-17797013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797013
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797013
    reference: chr 17
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.328C>T
  hgvsp: ENSP00000379088.4:p.Pro110Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.328C>T
  hgvsp: ENSP00000437655.1:p.Pro110Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.328C>T
  hgvsp: ENSP00000438621.1:p.Pro110Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4897C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4897C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.229C>T
  hgvsp: ENSP00000466863.1:p.Pro77Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4897C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.328C>T
  hgvsp: ENSP00000312860.10:p.Pro110Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.328C>T
  hgvsp: ENSP00000368818.3:p.Pro110Ser
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro110Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-17797015-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797015
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797015
    reference: chr 17
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4895C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4895C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.326C>A
  hgvsp: ENSP00000368818.3:p.Pro109His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.326C>A
  hgvsp: ENSP00000379088.4:p.Pro109His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.227C>A
  hgvsp: ENSP00000466863.1:p.Pro76His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.326C>A
  hgvsp: ENSP00000312860.10:p.Pro109His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.326C>A
  hgvsp: ENSP00000437655.1:p.Pro109His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.326C>A
  hgvsp: ENSP00000438621.1:p.Pro109His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4895C>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro109His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-17797017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797017
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797017
    reference: chr 17
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.324C>T
  hgvsp: ENST00000318094.10:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.324C>T
  hgvsp: ENST00000395739.4:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.324C>T
  hgvsp: ENST00000540946.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4893C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.324C>T
  hgvsp: ENST00000535933.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4893C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.225C>T
  hgvsp: ENST00000579586.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.324C>T
  hgvsp: ENST00000379504.3:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4893C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12835
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn108Asn
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

17-17797030-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797030
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797030
    reference: chr 17
allele count: 15
allele frequency: 1.242380068910681e-4
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.311C>T
  hgvsp: ENSP00000438621.1:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4880C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4880C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.212C>T
  hgvsp: ENSP00000466863.1:p.Ser71Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.311C>T
  hgvsp: ENSP00000437655.1:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4880C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.311C>T
  hgvsp: ENSP00000379088.4:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.311C>T
  hgvsp: ENSP00000312860.10:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.311C>T
  hgvsp: ENSP00000368818.3:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12836
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser104Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-17797032-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797032
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797032
    reference: chr 17
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4878A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.309A>G
  hgvsp: ENSP00000379088.4:p.Ile103Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.309A>G
  hgvsp: ENSP00000437655.1:p.Ile103Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.210A>G
  hgvsp: ENSP00000466863.1:p.Ile70Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4878A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4878A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.309A>G
  hgvsp: ENSP00000312860.10:p.Ile103Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.309A>G
  hgvsp: ENSP00000438621.1:p.Ile103Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.309A>G
  hgvsp: ENSP00000368818.3:p.Ile103Met
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12827
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile103Met
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

17-17797034-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797034
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797034
    reference: chr 17
allele count: 2
allele frequency: 1.656561640658649e-5
allele num: 120732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.208A>G
  hgvsp: ENSP00000466863.1:p.Ile70Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4876A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.307A>G
  hgvsp: ENSP00000437655.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4876A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.307A>G
  hgvsp: ENSP00000379088.4:p.Ile103Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.307A>G
  hgvsp: ENSP00000312860.10:p.Ile103Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.307A>G
  hgvsp: ENSP00000368818.3:p.Ile103Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.307A>G
  hgvsp: ENSP00000438621.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4876A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12824
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile103Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-17797037-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797037
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797037
    reference: chr 17
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4873A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4873A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.304A>G
  hgvsp: ENSP00000379088.4:p.Ile102Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.304A>G
  hgvsp: ENSP00000437655.1:p.Ile102Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4873A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.205A>G
  hgvsp: ENSP00000466863.1:p.Ile69Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.304A>G
  hgvsp: ENSP00000312860.10:p.Ile102Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.304A>G
  hgvsp: ENSP00000438621.1:p.Ile102Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.304A>G
  hgvsp: ENSP00000368818.3:p.Ile102Val
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20979
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile102Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

17-17797055-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797055
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797055
    reference: chr 17
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4855G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4855G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.187G>A
  hgvsp: ENSP00000466863.1:p.Asp63Asn
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.286G>A
  hgvsp: ENSP00000438621.1:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.286G>A
  hgvsp: ENSP00000379088.4:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.286G>A
  hgvsp: ENSP00000312860.10:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.286G>A
  hgvsp: ENSP00000368818.3:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.286G>A
  hgvsp: ENSP00000437655.1:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4855G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7848
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12816
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5178
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp96Asn
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

17-17797056-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797056
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797056
    reference: chr 17
allele count: 7
allele frequency: 5.799118533982834e-5
allele num: 120708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.285C>T
  hgvsp: ENST00000318094.10:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.285C>T
  hgvsp: ENST00000540946.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4854C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.285C>T
  hgvsp: ENST00000379504.3:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4854C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.285C>T
  hgvsp: ENST00000535933.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.186C>T
  hgvsp: ENST00000579586.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.285C>T
  hgvsp: ENST00000395739.4:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4854C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7851
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile95Ile
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

17-17797058-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797058
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797058
    reference: chr 17
allele count: 2
allele frequency: 1.65694591728526e-5
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4852A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.283A>G
  hgvsp: ENSP00000368818.3:p.Ile95Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.283A>G
  hgvsp: ENSP00000379088.4:p.Ile95Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.283A>G
  hgvsp: ENSP00000312860.10:p.Ile95Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.283A>G
  hgvsp: ENSP00000437655.1:p.Ile95Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4852A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.184A>G
  hgvsp: ENSP00000466863.1:p.Ile62Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4852A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.283A>G
  hgvsp: ENSP00000438621.1:p.Ile95Val
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile95Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

17-17797074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797074
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797074
    reference: chr 17
allele count: 42
allele frequency: 3.48125922119258e-4
allele num: 120646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.267G>A
  hgvsp: ENST00000535933.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.267G>A
  hgvsp: ENST00000540946.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.267G>A
  hgvsp: ENST00000379504.3:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.168G>A
  hgvsp: ENST00000579586.1:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.267G>A
  hgvsp: ENST00000395739.4:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.267G>A
  hgvsp: ENST00000318094.10:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4836G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4836G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4836G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5173
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val89Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-17797075-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797075
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797075
    reference: chr 17
allele count: 2
allele frequency: 1.657769967839263e-5
allele num: 120644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.266T>C
  hgvsp: ENSP00000437655.1:p.Val89Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.167T>C
  hgvsp: ENSP00000466863.1:p.Val56Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4835T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.266T>C
  hgvsp: ENSP00000438621.1:p.Val89Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.266T>C
  hgvsp: ENSP00000368818.3:p.Val89Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.266T>C
  hgvsp: ENSP00000379088.4:p.Val89Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4835T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4835T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.266T>C
  hgvsp: ENSP00000312860.10:p.Val89Ala
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val89Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

17-17797082-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797082
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797082
    reference: chr 17
allele count: 1
allele frequency: 8.295588406085643e-6
allele num: 120546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.259A>G
  hgvsp: ENSP00000438621.1:p.Ile87Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.259A>G
  hgvsp: ENSP00000312860.10:p.Ile87Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4828A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.160A>G
  hgvsp: ENSP00000466863.1:p.Ile54Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.259A>G
  hgvsp: ENSP00000379088.4:p.Ile87Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.259A>G
  hgvsp: ENSP00000437655.1:p.Ile87Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.259A>G
  hgvsp: ENSP00000368818.3:p.Ile87Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4828A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4828A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile87Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

17-17797089-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797089
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797089
    reference: chr 17
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4821C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.252C>A
  hgvsp: ENST00000318094.10:c.252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.252C>A
  hgvsp: ENST00000535933.1:c.252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4821C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.153C>A
  hgvsp: ENST00000579586.1:c.153C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4821C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.252C>A
  hgvsp: ENST00000379504.3:c.252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.252C>A
  hgvsp: ENST00000395739.4:c.252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.252C>A
  hgvsp: ENST00000540946.1:c.252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg84Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

17-17797090-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797090
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797090
    reference: chr 17
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.251G>A
  hgvsp: ENSP00000312860.10:p.Arg84His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4820G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.152G>A
  hgvsp: ENSP00000466863.1:p.Arg51His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.251G>A
  hgvsp: ENSP00000438621.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.251G>A
  hgvsp: ENSP00000368818.3:p.Arg84His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4820G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.251G>A
  hgvsp: ENSP00000379088.4:p.Arg84His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.251G>A
  hgvsp: ENSP00000437655.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4820G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16323
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg84His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

17-17797091-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797091
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797091
    reference: chr 17
allele count: 1
allele frequency: 8.305647840531562e-6
allele num: 120400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.151C>T
  hgvsp: ENSP00000466863.1:p.Arg51Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.250C>T
  hgvsp: ENSP00000368818.3:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4819C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.250C>T
  hgvsp: ENSP00000312860.10:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.250C>T
  hgvsp: ENSP00000438621.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.250C>T
  hgvsp: ENSP00000437655.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.250C>T
  hgvsp: ENSP00000379088.4:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4819C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4819C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg84Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-17797092-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797092
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797092
    reference: chr 17
allele count: 1
allele frequency: 8.307165761185599e-6
allele num: 120378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.249C>G
  hgvsp: ENSP00000368818.3:p.His83Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.150C>G
  hgvsp: ENSP00000466863.1:p.His50Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.249C>G
  hgvsp: ENSP00000379088.4:p.His83Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.249C>G
  hgvsp: ENSP00000437655.1:p.His83Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4818C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.249C>G
  hgvsp: ENSP00000438621.1:p.His83Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4818C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4818C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.249C>G
  hgvsp: ENSP00000312860.10:p.His83Gln
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7122
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His83Gln
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-17797094-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797094
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797094
    reference: chr 17
allele count: 4
allele frequency: 3.323528923010452e-5
allele num: 120354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.247C>T
  hgvsp: ENSP00000368818.3:p.His83Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4816C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.247C>T
  hgvsp: ENSP00000437655.1:p.His83Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.247C>T
  hgvsp: ENSP00000438621.1:p.His83Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.247C>T
  hgvsp: ENSP00000312860.10:p.His83Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4816C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.148C>T
  hgvsp: ENSP00000466863.1:p.His50Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.247C>T
  hgvsp: ENSP00000379088.4:p.His83Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4816C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His83Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

17-17797113-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797113
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797113
    reference: chr 17
allele count: 1
allele frequency: 8.354079296920687e-6
allele num: 119702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.129A>G
  hgvsp: ENST00000579586.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4797A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.228A>G
  hgvsp: ENST00000395739.4:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4797A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.228A>G
  hgvsp: ENST00000540946.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4797A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.228A>G
  hgvsp: ENST00000379504.3:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.228A>G
  hgvsp: ENST00000535933.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.228A>G
  hgvsp: ENST00000318094.10:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr76Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

17-17797121-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797121
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797121
    reference: chr 17
allele count: 1
allele frequency: 8.384197464618687e-6
allele num: 119272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.220C>T
  hgvsp: ENST00000535933.1:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.220C>T
  hgvsp: ENST00000379504.3:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.220C>T
  hgvsp: ENST00000540946.1:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.220C>T
  hgvsp: ENST00000318094.10:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4789C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.121C>T
  hgvsp: ENST00000579586.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4789C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.220C>T
  hgvsp: ENST00000395739.4:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4789C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12749
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu74Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

17-17797124-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797124
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797124
    reference: chr 17
allele count: 1
allele frequency: 8.40039649871474e-6
allele num: 119042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217G>A
  hgvsp: ENSP00000312860.10:p.Val73Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4786G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217G>A
  hgvsp: ENSP00000437655.1:p.Val73Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4786G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217G>A
  hgvsp: ENSP00000379088.4:p.Val73Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217G>A
  hgvsp: ENSP00000438621.1:p.Val73Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217G>A
  hgvsp: ENSP00000368818.3:p.Val73Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118G>A
  hgvsp: ENSP00000466863.1:p.Val40Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4786G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val73Met
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

17-17797127-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797127
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797127
    reference: chr 17
allele count: 1
allele frequency: 8.417366710998132e-6
allele num: 118802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4783C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-3C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-3C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4783C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4783C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-3C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-3C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-3C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-3C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: c.217-3C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum

17-17797128-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797128
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797128
    reference: chr 17
allele count: 1
allele frequency: 8.418075291265404e-6
allele num: 118792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4782T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-4T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4782T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-4T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-4T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-4T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-4T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-4T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4782T>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8571
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5072
  bin: 7.75e1
  variant carriers: 0
hgvs: c.217-4T>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

17-17797134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797134
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797134
    reference: chr 17
allele count: 2
allele frequency: 1.690217023865864e-5
allele num: 118328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-10C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-10C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-10C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-10C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-10C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4776C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4776C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-10C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4776C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3338
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

17-17797134-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797134
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797134
    reference: chr 17
allele count: 1
allele frequency: 8.451085119329322e-6
allele num: 118328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-10C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-10C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-10C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-10C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4776C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-10C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4776C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4776C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-10C>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12734
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

17-17797137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797137
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797137
    reference: chr 17
allele count: 2
allele frequency: 1.692505585268431e-5
allele num: 118168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4773C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-13C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-13C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-13C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-13C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-13C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4773C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-13C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4773C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13876
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4436
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7378
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-17797138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797138
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797138
    reference: chr 17
allele count: 6
allele frequency: 5.083884087442806e-5
allele num: 118020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4772C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-14C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-14C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-14C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4772C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4772C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-14C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-14C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-14C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

17-17797139-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797139
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797139
    reference: chr 17
allele count: 1
allele frequency: 8.477018802027703e-6
allele num: 117966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4771C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-15C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-15C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-15C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-15C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-15C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4771C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-15C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4771C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12721
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-17797158-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797158
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797158
    reference: chr 17
allele count: 1
allele frequency: 8.571477551300294e-6
allele num: 116666
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4752T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4752T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4752T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-34T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-34T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-34T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-34T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-34T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-34T>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4832
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-17797160-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797160
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797160
    reference: chr 17
allele count: 2
allele frequency: 1.717917883525167e-5
allele num: 116420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4750A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-36A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-36A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4750A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4750A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-36A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-36A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-36A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-36A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4804
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-17797161-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797161
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797161
    reference: chr 17
allele count: 1
allele frequency: 8.602150537634409e-6
allele num: 116250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4749C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-37C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-37C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-37C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-37C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4749C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-37C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-37C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4749C>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4797
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12663
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-17797166-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797166
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797166
    reference: chr 17
allele count: 2
allele frequency: 1.728787774012862e-5
allele num: 115688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4744G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-42G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-42G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-42G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4744G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4744G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-42G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-42G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-42G>C
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12646
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6059
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-17797171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17797171
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17797171
    reference: chr 17
allele count: 1
allele frequency: 8.668666239012466e-6
allele num: 115358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.217-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.217-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+4739C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+4739C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.217-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.217-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+4739C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.217-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.118-47C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-17801860-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801860
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801860
    reference: chr 17
allele count: 3
allele frequency: 2.47222863170386e-5
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+50T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+50T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+50T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+50T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+50T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+50T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+50T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+50T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+50T>C
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11660
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

17-17801861-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801861
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801861
    reference: chr 17
allele count: 20
allele frequency: 1.648206751054852e-4
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+49C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+49C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+49C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+49C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+49C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+49C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+49C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+49C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+49C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

17-17801871-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801871
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801871
    reference: chr 17
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+39G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+39G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+39G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+39G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+39G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+39G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+39G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+39G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+39G>C
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20096
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11643
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-17801871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801871
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801871
    reference: chr 17
allele count: 6
allele frequency: 4.943479550472926e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+39G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+39G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+39G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+39G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+39G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+39G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+39G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+39G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+39G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7280
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20096
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

17-17801873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801873
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801873
    reference: chr 17
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+37G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+37G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+37G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+37G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+37G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+37G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+37G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+37G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+37G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

17-17801876-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801876
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801876
    reference: chr 17
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+34C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+34C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+34C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+34C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+34C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+34C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+34C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+34C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+34C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

17-17801881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801881
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801881
    reference: chr 17
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+29G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+29G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+29G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+29G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+29G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+29G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+29G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+29G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+29G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

17-17801886-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801886
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801886
    reference: chr 17
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+24G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+24G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+24G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+24G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+24G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+24G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+24G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+24G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+24G>C
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/17-17801898-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801898
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801898
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+12T>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-17801900-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801900
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801900
    reference: chr 17
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216+10A>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216+10A>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216+10A>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117+10A>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300+10A>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216+10A>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216+10A>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216+10A>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216+10A>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4743
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

17-17801910-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801910
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801910
    reference: chr 17
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216A>T
  hgvsp: ENST00000542206.1:c.216A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216A>T
  hgvsp: ENST00000581396.1:c.216A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216A>T
  hgvsp: ENST00000379504.3:c.216A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117A>T
  hgvsp: ENST00000579586.1:c.117A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300A>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216A>T
  hgvsp: ENST00000535933.1:c.216A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216A>T
  hgvsp: ENST00000540946.1:c.216A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216A>T
  hgvsp: ENST00000318094.10:c.216A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216A>T
  hgvsp: ENST00000395739.4:c.216A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: c.216A>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-17801910-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801910
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801910
    reference: chr 17
allele count: 12
allele frequency: 9.884678747940691e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.300A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.216A>G
  hgvsp: ENST00000542206.1:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.117A>G
  hgvsp: ENST00000579586.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.216A>G
  hgvsp: ENST00000395739.4:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.216A>G
  hgvsp: ENST00000535933.1:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.216A>G
  hgvsp: ENST00000581396.1:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.216A>G
  hgvsp: ENST00000540946.1:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.216A>G
  hgvsp: ENST00000318094.10:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.216A>G
  hgvsp: ENST00000379504.3:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23181
  bin: 6.25e1
  variant carriers: 0
hgvs: c.216A>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

17-17801916-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801916
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801916
    reference: chr 17
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.210A>G
  hgvsp: ENST00000542206.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.210A>G
  hgvsp: ENST00000535933.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.210A>G
  hgvsp: ENST00000318094.10:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.210A>G
  hgvsp: ENST00000581396.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.210A>G
  hgvsp: ENST00000379504.3:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.210A>G
  hgvsp: ENST00000395739.4:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.294A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.111A>G
  hgvsp: ENST00000579586.1:c.111A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.210A>G
  hgvsp: ENST00000540946.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala70Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

17-17801916-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801916
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801916
    reference: chr 17
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.210A>C
  hgvsp: ENST00000540946.1:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.210A>C
  hgvsp: ENST00000581396.1:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.210A>C
  hgvsp: ENST00000318094.10:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.210A>C
  hgvsp: ENST00000379504.3:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.111A>C
  hgvsp: ENST00000579586.1:c.111A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.210A>C
  hgvsp: ENST00000535933.1:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.210A>C
  hgvsp: ENST00000395739.4:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.294A>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.210A>C
  hgvsp: ENST00000542206.1:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11620
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala70Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-17801932-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801932
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801932
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.194G>C
  hgvsp: ENSP00000379088.4:p.Arg65Thr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.194G>C
  hgvsp: ENSP00000464297.1:p.Arg65Thr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.194G>C
  hgvsp: ENSP00000438621.1:p.Arg65Thr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.194G>C
  hgvsp: ENSP00000437655.1:p.Arg65Thr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.95G>C
  hgvsp: ENSP00000466863.1:p.Arg32Thr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.278G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.194G>C
  hgvsp: ENSP00000368818.3:p.Arg65Thr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.194G>C
  hgvsp: ENSP00000445188.1:p.Arg65Thr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.194G>C
  hgvsp: ENSP00000312860.10:p.Arg65Thr
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11616
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg65Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

17-17801935-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801935
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801935
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.191A>G
  hgvsp: ENSP00000438621.1:p.Tyr64Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.191A>G
  hgvsp: ENSP00000312860.10:p.Tyr64Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.191A>G
  hgvsp: ENSP00000437655.1:p.Tyr64Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.191A>G
  hgvsp: ENSP00000464297.1:p.Tyr64Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.191A>G
  hgvsp: ENSP00000445188.1:p.Tyr64Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.191A>G
  hgvsp: ENSP00000379088.4:p.Tyr64Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.275A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.191A>G
  hgvsp: ENSP00000368818.3:p.Tyr64Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.92A>G
  hgvsp: ENSP00000466863.1:p.Tyr31Cys
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr64Cys
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

17-17801941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801941
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801941
    reference: chr 17
allele count: 6
allele frequency: 4.942013705851344e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.86G>A
  hgvsp: ENSP00000466863.1:p.Arg29Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.185G>A
  hgvsp: ENSP00000312860.10:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.185G>A
  hgvsp: ENSP00000379088.4:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.185G>A
  hgvsp: ENSP00000445188.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.185G>A
  hgvsp: ENSP00000438621.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.185G>A
  hgvsp: ENSP00000437655.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.185G>A
  hgvsp: ENSP00000368818.3:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.185G>A
  hgvsp: ENSP00000464297.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.269G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg62Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

17-17801948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801948
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801948
    reference: chr 17
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.178G>A
  hgvsp: ENSP00000437655.1:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.262G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.178G>A
  hgvsp: ENSP00000312860.10:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.178G>A
  hgvsp: ENSP00000379088.4:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.178G>A
  hgvsp: ENSP00000368818.3:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.178G>A
  hgvsp: ENSP00000464297.1:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.178G>A
  hgvsp: ENSP00000438621.1:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.178G>A
  hgvsp: ENSP00000445188.1:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.79G>A
  hgvsp: ENSP00000466863.1:p.Gly27Arg
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16088
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly60Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

17-17801949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801949
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801949
    reference: chr 17
allele count: 27
allele frequency: 2.223906167633105e-4
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.177C>T
  hgvsp: ENST00000535933.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.177C>T
  hgvsp: ENST00000540946.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.177C>T
  hgvsp: ENST00000542206.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.261C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.177C>T
  hgvsp: ENST00000395739.4:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.177C>T
  hgvsp: ENST00000318094.10:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.177C>T
  hgvsp: ENST00000379504.3:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.177C>T
  hgvsp: ENST00000581396.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.78C>T
  hgvsp: ENST00000579586.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn59Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

17-17801950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801950
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801950
    reference: chr 17
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.176A>G
  hgvsp: ENSP00000379088.4:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.176A>G
  hgvsp: ENSP00000438621.1:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.77A>G
  hgvsp: ENSP00000466863.1:p.Asn26Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.176A>G
  hgvsp: ENSP00000464297.1:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.176A>G
  hgvsp: ENSP00000437655.1:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.176A>G
  hgvsp: ENSP00000312860.10:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.176A>G
  hgvsp: ENSP00000445188.1:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.176A>G
  hgvsp: ENSP00000368818.3:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.260A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16089
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10291
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn59Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-17801956-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801956
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801956
    reference: chr 17
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.170G>A
  hgvsp: ENSP00000464297.1:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.170G>A
  hgvsp: ENSP00000438621.1:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.170G>A
  hgvsp: ENSP00000437655.1:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.170G>A
  hgvsp: ENSP00000445188.1:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.170G>A
  hgvsp: ENSP00000368818.3:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.254G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.170G>A
  hgvsp: ENSP00000379088.4:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.71G>A
  hgvsp: ENSP00000466863.1:p.Arg24Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.170G>A
  hgvsp: ENSP00000312860.10:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg57Gln
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

17-17801972-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17801972
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17801972
    reference: chr 17
allele count: 111
allele frequency: 9.143177212895999e-4
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.154C>A
  hgvsp: ENST00000542206.1:c.154C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.154C>A
  hgvsp: ENST00000379504.3:c.154C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.154C>A
  hgvsp: ENST00000318094.10:c.154C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.154C>A
  hgvsp: ENST00000535933.1:c.154C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000466863
  ensembl transcript: ENST00000579586
  gene symbol: TOM1L2
  hgvsc: ENST00000579586.1:c.55C>A
  hgvsp: ENST00000579586.1:c.55C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.238C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.154C>A
  hgvsp: ENST00000395739.4:c.154C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.154C>A
  hgvsp: ENST00000540946.1:c.154C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.154C>A
  hgvsp: ENST00000581396.1:c.154C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20171
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg52Arg
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48147
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.728e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.67e0

QD
type: SiteQuality
SIO_000300: 1.792e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

DP
type: SiteQuality
SIO_000300: 3.486411e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48147
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.99e0

QD
type: SiteQuality
SIO_000300: 1.301e1

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 3.485431e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.003121623244087e-5
allele num: 66632
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.482036e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

MQRankSum
type: SiteQuality
SIO_000300: -2.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

VQSLOD
type: SiteQuality
SIO_000300: 8.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48149
bin: 9.75e1
variant carriers: 10

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.062075654704171e-4
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 3.479863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

VQSLOD
type: SiteQuality
SIO_000300: 9.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 9.379999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.163e0

GenotypeQuality
all individuals: 1112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 769
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e-1

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 3.467e0

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

DP
type: SiteQuality
SIO_000300: 3.472297e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.713e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.198e0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4499
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66002
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.844626967830253e-5
allele num: 14610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

QD
type: SiteQuality
SIO_000300: 1.533e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 2.023311e6

VQSLOD
type: SiteQuality
SIO_000300: -7.865e-1

FS
type: SiteQuality
SIO_000300: 4.523e0

GenotypeQuality
all individuals: 4499
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12909
bin: 9.75e1
variant carriers: 66

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5147
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 60
allele frequency: 6.958942240779402e-3
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.768392370572207e-4
allele num: 14680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

FS
type: SiteQuality
SIO_000300: 1.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.02613e6

QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
all individuals: 18088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 390
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.052169702838468e-5
allele num: 66092
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.044153720359771e-4
allele num: 9784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.148e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

DP
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SIO_000300: 2.02842e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024254521260509e-5
allele num: 66132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

FS
type: SiteQuality
SIO_000300: 6.172e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.08e0

QD
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SIO_000300: 1.178e1

DP
type: SiteQuality
SIO_000300: 2.030742e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15692
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.429738562091503e-3
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.312e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

DP
type: SiteQuality
SIO_000300: 2.048949e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.99e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.429e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

DP
type: SiteQuality
SIO_000300: 2.063739e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.635e0

VQSLOD
type: SiteQuality
SIO_000300: -8.914e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.964e0

FS
type: SiteQuality
SIO_000300: 1.297e0

MQRankSum
type: SiteQuality
SIO_000300: -1.059e0

DP
type: SiteQuality
SIO_000300: 2.063872e6

QD
type: SiteQuality
SIO_000300: 1.227e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.065122e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
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Other
type: Population
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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Other
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QD
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FS
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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Other
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InbreedingCoeff
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FS
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QD
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
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QD
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 6614
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African
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South Asian
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Latino
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European (Non-Finnish)
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allele num: 66710
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Other
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East Asian
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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European (Non-Finnish)
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Other
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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Other
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East Asian
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MQ
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DP
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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South Asian
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 2.04e-1

DP
type: SiteQuality
SIO_000300: 2.063032e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

FS
type: SiteQuality
SIO_000300: 1.774e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

QD
type: SiteQuality
SIO_000300: 1.205e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

DP
type: SiteQuality
SIO_000300: 2.062588e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

FS
type: SiteQuality
SIO_000300: 1.331e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 41
allele frequency: 4.192229038854806e-3
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.224e0

QD
type: SiteQuality
SIO_000300: 1.352e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

FS
type: SiteQuality
SIO_000300: 5.28e-1

DP
type: SiteQuality
SIO_000300: 2.061174e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.421e0

QD
type: SiteQuality
SIO_000300: 1.361e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.719999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.315e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

DP
type: SiteQuality
SIO_000300: 2.059162e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12769
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.188e1

DP
type: SiteQuality
SIO_000300: 2.057221e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.429e0

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.158e1

DP
type: SiteQuality
SIO_000300: 2.055501e6

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.406e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele frequency: 6.102770657878677e-5
allele num: 16386
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.077e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.464e0

QD
type: SiteQuality
SIO_000300: 3.91e0

DP
type: SiteQuality
SIO_000300: 2.055383e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.633e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

DP
type: SiteQuality
SIO_000300: 2.054552e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.64e-1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 3.076292042657916e-4
allele num: 9752
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
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allele frequency: 0.0e0
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Latino
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East Asian
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InbreedingCoeff
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DP
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 6.269592476489028e-5
allele num: 15950
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Latino
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allele frequency: 0.0e0
allele num: 11536
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66370
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Other
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allele frequency: 0.0e0
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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DP
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FS
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MQRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9714
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.510026576467746e-5
allele num: 66224
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Latino
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East Asian
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Other
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66134
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.030502885408079e-4
allele num: 9704
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.02e0

MQ
type: SiteQuality
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 1.5e-3

ClippingRankSum
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SIO_000300: -1.89e-1

DP
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MQRankSum
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SIO_000300: 1.39e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66064
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African
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allele frequency: 1.030927835051546e-4
allele num: 9700
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.5e-3

VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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DP
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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Other
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Latino
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num of homozygotes: 0

South Asian
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MQRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.033704456511847e-5
allele num: 65926
num of homozygotes: 0

South Asian
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European (Finnish)
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African
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Other
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East Asian
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QD
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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Latino
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African
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East Asian
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South Asian
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15048
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517957436473481e-5
allele num: 65878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.001408e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

FS
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SIO_000300: 2.268e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.931e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 2.276e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518879674352198e-5
allele num: 65838
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.652244708071644e-4
allele num: 8598
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.03498240529911e-4
allele num: 9662
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.995734e6

FS
type: SiteQuality
SIO_000300: 6.56e-1

ReadPosRankSum
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SIO_000300: -1.27e-1

QD
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SIO_000300: 1.308e1

MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.286e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519018106695832e-5
allele num: 65832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
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SIO_000300: 1.995248e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

VQSLOD
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.023e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.039933444259567e-4
allele num: 9616
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65458
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.936835e6

VQSLOD
type: SiteQuality
SIO_000300: -1.625e0

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.55e0

ClippingRankSum
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SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.435338022104206e-4
allele num: 13934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65404
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.1e1

FS
type: SiteQuality
SIO_000300: 8.429e0

DP
type: SiteQuality
SIO_000300: 1.927255e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 7.226477814713109e-5
allele num: 13838
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65354
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.06767286336585e-5
allele num: 65196
num of homozygotes: 0

South Asian
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allele count: 0
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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MQ
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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BaseQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999040307101727e-5
allele num: 66688
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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DP
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QD
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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SIO_000300: 6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11656
bin: 9.75e1
variant carriers: 20

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 2.999220202747286e-4
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.771e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.128851e6

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

QD
type: SiteQuality
SIO_000300: 1.332e1

GenotypeQuality
all individuals: 4736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.012e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

FS
type: SiteQuality
SIO_000300: 7.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.349e1

DP
type: SiteQuality
SIO_000300: 2.129368e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.634161114476075e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.012e0

QD
type: SiteQuality
SIO_000300: 1.349e1

FS
type: SiteQuality
SIO_000300: 7.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

DP
type: SiteQuality
SIO_000300: 2.129368e6

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.921e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.129395e6

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 1.073e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 11635
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variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e0

FS
type: SiteQuality
SIO_000300: 6.963e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

VQSLOD
type: SiteQuality
SIO_000300: -4.537e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 2.129434e6

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.314e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

FS
type: SiteQuality
SIO_000300: 2.275e0

MQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

DP
type: SiteQuality
SIO_000300: 2.129653e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.049e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.465e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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SIO_000300: 1.214e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

ReadPosRankSum
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SIO_000300: 2.5e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
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European (Non-Finnish)
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allele frequency: 1.498845888665727e-5
allele num: 66718
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South Asian
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
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East Asian
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allele num: 8654
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South Asian
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European (Non-Finnish)
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Latino
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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DP
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.79834552211965e-4
allele num: 66728
num of homozygotes: 0

South Asian
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
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FS
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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East Asian
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MQ
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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African
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QD
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VQSLOD
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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VQSLOD
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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ClippingRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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FS
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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Latino
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allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

DP
type: SiteQuality
SIO_000300: 2.129773e6

QD
type: SiteQuality
SIO_000300: 2.204e1

VQSLOD
type: SiteQuality
SIO_000300: -2.096e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4749
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11611
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10290
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.848856020337416e-3
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.188e1

DP
type: SiteQuality
SIO_000300: 2.130833e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 1.134e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4750
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11590
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.38e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 3.195e0

DP
type: SiteQuality
SIO_000300: 2.129154e6

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3496
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11587
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
SIO_000300: 3.452e0

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

QD
type: SiteQuality
SIO_000300: 8.23e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.437e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.566e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.129033e6

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0