20-31376660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376660
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376660
    reference: chr 20
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.655G>A
  hgvsp: ENSP00000328547.2:p.Asp219Asn
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.691G>A
  hgvsp: ENSP00000201963.3:p.Asp231Asn
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.655G>A
  hgvsp: ENSP00000313397.4:p.Asp219Asn
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.655G>A
  hgvsp: ENSP00000345105.4:p.Asp219Asn
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.529G>A
  hgvsp: ENSP00000403169.2:p.Asp177Asn
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.427G>A
  hgvsp: ENSP00000412305.1:p.Asp143Asn
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.529G>A
  hgvsp: ENSP00000364774.4:p.Asp177Asn
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.655G>A
  hgvsp: ENSP00000337764.2:p.Asp219Asn
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15569
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp219Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

20-31376664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376664
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376664
    reference: chr 20
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.533G>A
  hgvsp: ENSP00000364774.4:p.Gly178Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.659G>A
  hgvsp: ENSP00000345105.4:p.Gly220Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.431G>A
  hgvsp: ENSP00000412305.1:p.Gly144Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.533G>A
  hgvsp: ENSP00000403169.2:p.Gly178Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.695G>A
  hgvsp: ENSP00000201963.3:p.Gly232Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.659G>A
  hgvsp: ENSP00000337764.2:p.Gly220Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.659G>A
  hgvsp: ENSP00000313397.4:p.Gly220Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.659G>A
  hgvsp: ENSP00000328547.2:p.Gly220Glu
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly220Glu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

20-31376684-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376684
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376684
    reference: chr 20
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.679G>C
  hgvsp: ENSP00000313397.4:p.Asp227His
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.553G>C
  hgvsp: ENSP00000403169.2:p.Asp185His
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.715G>C
  hgvsp: ENSP00000201963.3:p.Asp239His
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.451G>C
  hgvsp: ENSP00000412305.1:p.Asp151His
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.679G>C
  hgvsp: ENSP00000345105.4:p.Asp227His
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.553G>C
  hgvsp: ENSP00000364774.4:p.Asp185His
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.679G>C
  hgvsp: ENSP00000337764.2:p.Asp227His
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.679G>C
  hgvsp: ENSP00000328547.2:p.Asp227His
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp227His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

20-31376689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376689
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376689
    reference: chr 20
allele count: 5
allele frequency: 4.11834475487612e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.456C>T
  hgvsp: ENST00000456297.2:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.684C>T
  hgvsp: ENST00000344505.4:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.684C>T
  hgvsp: ENST00000348286.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.558C>T
  hgvsp: ENST00000443239.3:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.684C>T
  hgvsp: ENST00000328111.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.720C>T
  hgvsp: ENST00000201963.3:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.558C>T
  hgvsp: ENST00000375623.4:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.684C>T
  hgvsp: ENST00000353855.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu228Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

20-31376701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376701
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376701
    reference: chr 20
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.570G>A
  hgvsp: ENST00000375623.4:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.696G>A
  hgvsp: ENST00000348286.2:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.468G>A
  hgvsp: ENST00000456297.2:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.732G>A
  hgvsp: ENST00000201963.3:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.696G>A
  hgvsp: ENST00000353855.2:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.696G>A
  hgvsp: ENST00000328111.2:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.696G>A
  hgvsp: ENST00000344505.4:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.570G>A
  hgvsp: ENST00000443239.3:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys232Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

20-31376725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376725
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376725
    reference: chr 20
allele count: 6
allele frequency: 4.942502224126001e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.720C>T
  hgvsp: ENST00000344505.4:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.594C>T
  hgvsp: ENST00000375623.4:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.756C>T
  hgvsp: ENST00000201963.3:c.756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.720C>T
  hgvsp: ENST00000353855.2:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.720C>T
  hgvsp: ENST00000328111.2:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.720C>T
  hgvsp: ENST00000348286.2:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.594C>T
  hgvsp: ENST00000443239.3:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.492C>T
  hgvsp: ENST00000456297.2:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2944
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro240Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

20-31376728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376728
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376728
    reference: chr 20
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.495C>T
  hgvsp: ENST00000456297.2:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.723C>T
  hgvsp: ENST00000348286.2:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.597C>T
  hgvsp: ENST00000375623.4:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.723C>T
  hgvsp: ENST00000353855.2:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.723C>T
  hgvsp: ENST00000328111.2:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.723C>T
  hgvsp: ENST00000344505.4:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.759C>T
  hgvsp: ENST00000201963.3:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.597C>T
  hgvsp: ENST00000443239.3:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala241Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/20-31376729-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376729
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376729
    reference: chr 20
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.760A>C
  hgvsp: ENSP00000201963.3:p.Met254Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.724A>C
  hgvsp: ENSP00000313397.4:p.Met242Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.598A>C
  hgvsp: ENSP00000403169.2:p.Met200Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.724A>C
  hgvsp: ENSP00000345105.4:p.Met242Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.598A>C
  hgvsp: ENSP00000364774.4:p.Met200Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.724A>C
  hgvsp: ENSP00000328547.2:p.Met242Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.496A>C
  hgvsp: ENSP00000412305.1:p.Met166Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.724A>C
  hgvsp: ENSP00000337764.2:p.Met242Leu
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15589
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met242Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

20-31376730-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376730
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376730
    reference: chr 20
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.599T>C
  hgvsp: ENSP00000403169.2:p.Met200Thr
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.725T>C
  hgvsp: ENSP00000313397.4:p.Met242Thr
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.725T>C
  hgvsp: ENSP00000328547.2:p.Met242Thr
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.497T>C
  hgvsp: ENSP00000412305.1:p.Met166Thr
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.725T>C
  hgvsp: ENSP00000345105.4:p.Met242Thr
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.599T>C
  hgvsp: ENSP00000364774.4:p.Met200Thr
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.761T>C
  hgvsp: ENSP00000201963.3:p.Met254Thr
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.725T>C
  hgvsp: ENSP00000337764.2:p.Met242Thr
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6313
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met242Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

20-31376731-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376731
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376731
    reference: chr 20
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.600G>T
  hgvsp: ENSP00000403169.2:p.Met200Ile
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.726G>T
  hgvsp: ENSP00000328547.2:p.Met242Ile
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.726G>T
  hgvsp: ENSP00000337764.2:p.Met242Ile
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.498G>T
  hgvsp: ENSP00000412305.1:p.Met166Ile
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.600G>T
  hgvsp: ENSP00000364774.4:p.Met200Ile
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.726G>T
  hgvsp: ENSP00000345105.4:p.Met242Ile
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.762G>T
  hgvsp: ENSP00000201963.3:p.Met254Ile
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.726G>T
  hgvsp: ENSP00000313397.4:p.Met242Ile
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10596
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met242Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

20-31376734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376734
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376734
    reference: chr 20
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.603G>A
  hgvsp: ENST00000443239.3:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.765G>A
  hgvsp: ENST00000201963.3:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.603G>A
  hgvsp: ENST00000375623.4:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.729G>A
  hgvsp: ENST00000353855.2:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.729G>A
  hgvsp: ENST00000348286.2:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.729G>A
  hgvsp: ENST00000328111.2:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.729G>A
  hgvsp: ENST00000344505.4:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.501G>A
  hgvsp: ENST00000456297.2:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29955
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val243Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

20-31376737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376737
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376737
    reference: chr 20
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.732G>A
  hgvsp: ENST00000344505.4:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.732G>A
  hgvsp: ENST00000348286.2:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.504G>A
  hgvsp: ENST00000456297.2:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.768G>A
  hgvsp: ENST00000201963.3:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.732G>A
  hgvsp: ENST00000353855.2:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.606G>A
  hgvsp: ENST00000443239.3:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.606G>A
  hgvsp: ENST00000375623.4:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.732G>A
  hgvsp: ENST00000328111.2:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22768
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6311
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val244Val
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

20-31376744-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376744
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376744
    reference: chr 20
allele count: 4
allele frequency: 3.295164346321773e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.739A>G
  hgvsp: ENSP00000313397.4:p.Lys247Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.613A>G
  hgvsp: ENSP00000403169.2:p.Lys205Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.613A>G
  hgvsp: ENSP00000364774.4:p.Lys205Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.739A>G
  hgvsp: ENSP00000337764.2:p.Lys247Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.511A>G
  hgvsp: ENSP00000412305.1:p.Lys171Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.775A>G
  hgvsp: ENSP00000201963.3:p.Lys259Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.739A>G
  hgvsp: ENSP00000345105.4:p.Lys247Glu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.739A>G
  hgvsp: ENSP00000328547.2:p.Lys247Glu
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys247Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS

20-31376760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376760
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376760
    reference: chr 20
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.791G>A
  hgvsp: ENSP00000201963.3:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.527G>A
  hgvsp: ENSP00000412305.1:p.Arg176Gln
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.755G>A
  hgvsp: ENSP00000337764.2:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.755G>A
  hgvsp: ENSP00000313397.4:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.629G>A
  hgvsp: ENSP00000364774.4:p.Arg210Gln
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.629G>A
  hgvsp: ENSP00000403169.2:p.Arg210Gln
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.755G>A
  hgvsp: ENSP00000345105.4:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.755G>A
  hgvsp: ENSP00000328547.2:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg252Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-31376760-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376760
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376760
    reference: chr 20
allele count: 3
allele frequency: 2.471861971227527e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.755G>T
  hgvsp: ENSP00000313397.4:p.Arg252Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.629G>T
  hgvsp: ENSP00000403169.2:p.Arg210Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.755G>T
  hgvsp: ENSP00000328547.2:p.Arg252Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.755G>T
  hgvsp: ENSP00000337764.2:p.Arg252Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.791G>T
  hgvsp: ENSP00000201963.3:p.Arg264Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.629G>T
  hgvsp: ENSP00000364774.4:p.Arg210Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.755G>T
  hgvsp: ENSP00000345105.4:p.Arg252Leu
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.527G>T
  hgvsp: ENSP00000412305.1:p.Arg176Leu
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10581
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg252Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

20-31376763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376763
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376763
    reference: chr 20
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.530A>G
  hgvsp: ENSP00000412305.1:p.Gln177Arg
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.758A>G
  hgvsp: ENSP00000313397.4:p.Gln253Arg
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.632A>G
  hgvsp: ENSP00000364774.4:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.758A>G
  hgvsp: ENSP00000345105.4:p.Gln253Arg
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.758A>G
  hgvsp: ENSP00000328547.2:p.Gln253Arg
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.632A>G
  hgvsp: ENSP00000403169.2:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.758A>G
  hgvsp: ENSP00000337764.2:p.Gln253Arg
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.794A>G
  hgvsp: ENSP00000201963.3:p.Gln265Arg
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22755
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln253Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-31376766-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376766
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376764
    reference: chr 20
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.799_800delAT
  hgvsp: ENSP00000201963.3:p.Met267ValfsTer33
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.763_764delAT
  hgvsp: ENSP00000337764.2:p.Met255ValfsTer33
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.763_764delAT
  hgvsp: ENSP00000345105.4:p.Met255ValfsTer33
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.535_536delAT
  hgvsp: ENSP00000412305.1:p.Met179ValfsTer33
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.763_764delAT
  hgvsp: ENSP00000313397.4:p.Met255ValfsTer33
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.637_638delAT
  hgvsp: ENSP00000403169.2:p.Met213ValfsTer33
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.763_764delAT
  hgvsp: ENSP00000328547.2:p.Met255ValfsTer33
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.637_638delAT
  hgvsp: ENSP00000364774.4:p.Met213ValfsTer33
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met255ValfsTer33
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: CTA
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

20-31376773-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31376773
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 31376773
    reference: chr 20
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000337764
  ensembl transcript: ENST00000348286
  gene symbol: DNMT3B
  hgvsc: ENST00000348286.2:c.768T>C
  hgvsp: ENST00000348286.2:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000412305
  ensembl transcript: ENST00000456297
  gene symbol: DNMT3B
  hgvsc: ENST00000456297.2:c.540T>C
  hgvsp: ENST00000456297.2:c.540T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000201963
  ensembl transcript: ENST00000201963
  gene symbol: DNMT3B
  hgvsc: ENST00000201963.3:c.804T>C
  hgvsp: ENST00000201963.3:c.804T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000364774
  ensembl transcript: ENST00000375623
  gene symbol: DNMT3B
  hgvsc: ENST00000375623.4:c.642T>C
  hgvsp: ENST00000375623.4:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000345105
  ensembl transcript: ENST00000344505
  gene symbol: DNMT3B
  hgvsc: ENST00000344505.4:c.768T>C
  hgvsp: ENST00000344505.4:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000313397
  ensembl transcript: ENST00000353855
  gene symbol: DNMT3B
  hgvsc: ENST00000353855.2:c.768T>C
  hgvsp: ENST00000353855.2:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000328547
  ensembl transcript: ENST00000328111
  gene symbol: DNMT3B
  hgvsc: ENST00000328111.2:c.768T>C
  hgvsp: ENST00000328111.2:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000088305
  ensembl protein: ENSP00000403169
  ensembl transcript: ENST00000443239
  gene symbol: DNMT3B
  hgvsc: ENST00000443239.3:c.642T>C
  hgvsp: ENST00000443239.3:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4349
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser256Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

22-35741820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741820
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35741820
    reference: chr 22
allele count: 22110
allele frequency: 1.826970748636589e-1
allele num: 121020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1121+43G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1284+43G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1185+43G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1149+43G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1170+43G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*485+43G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1380+43G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1284+43G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1599+43G>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.25e1
  variant carriers: 823
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.75e1
  variant carriers: 721
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 6.75e1
  variant carriers: 1503
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 8.75e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 2.75e1
  variant carriers: 554
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 8.25e1
  variant carriers: 513
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 3.75e1
  variant carriers: 1299
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 6.25e1
  variant carriers: 2039
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 4.25e1
  variant carriers: 1908
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 5.25e1
  variant carriers: 2533
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 9.75e1
  variant carriers: 776
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 5.75e1
  variant carriers: 2375
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 4.75e1
  variant carriers: 2325
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 1087
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 7.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 23
num of homozygotes: 2522
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

22-35741823-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741823
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35741823
    reference: chr 22
allele count: 1754
allele frequency: 1.447314134829606e-2
allele num: 121190
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1284+46G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1599+46G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1284+46G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1149+46G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1170+46G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1121+46G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1380+46G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*485+46G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1185+46G>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 5.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 4.75e1
  variant carriers: 262
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 4.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 7.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 3.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 6.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 3.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 6.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 9.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 5.75e1
  variant carriers: 193
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 30
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

22-35742873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742873
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742873
    reference: chr 22
allele count: 6
allele frequency: 5.056378621631188e-5
allele num: 118662
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-50C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-50C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-50C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-50C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-50C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-50C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-50C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-50C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-50C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

22-35742873-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742873
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742873
    reference: chr 22
allele count: 1
allele frequency: 8.427297702718647e-6
allele num: 118662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-50C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-50C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-50C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-50C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-50C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-50C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-50C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-50C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-50C>G
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

22-35742874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742874
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742874
    reference: chr 22
allele count: 3
allele frequency: 2.527635481261796e-5
allele num: 118688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-49G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-49G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-49G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-49G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-49G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-49G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-49G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-49G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-49G>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12827
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27275
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

22-35742874-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742874
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742874
    reference: chr 22
allele count: 1
allele frequency: 8.425451604205986e-6
allele num: 118688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-49G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-49G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-49G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-49G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-49G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-49G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-49G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-49G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-49G>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12827
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

22-35742875-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742875
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742875
    reference: chr 22
allele count: 1
allele frequency: 8.422754914677492e-6
allele num: 118726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-48T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-48T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-48T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-48T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-48T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-48T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-48T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-48T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-48T>C
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27277
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4993
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

22-35742879-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742879
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742879
    reference: chr 22
allele count: 1
allele frequency: 8.422896802668375e-6
allele num: 118724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-44G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-44G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-44G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-44G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-44G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-44G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-44G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-44G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-44G>C
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

22-35742881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742881
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742881
    reference: chr 22
allele count: 5
allele frequency: 4.207620842870607e-5
allele num: 118832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-42G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-42G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-42G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-42G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-42G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-42G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-42G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-42G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-42G>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12825
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11554
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

22-35742883-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742883
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742883
    reference: chr 22
allele count: 2
allele frequency: 1.683331650001683e-5
allele num: 118812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-40G>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12823
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

22-35742886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742886
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742886
    reference: chr 22
allele count: 23
allele frequency: 1.935701060427537e-4
allele num: 118820
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-37C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12824
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11695
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

22-35742887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742887
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742887
    reference: chr 22
allele count: 5
allele frequency: 4.204295107882212e-5
allele num: 118926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-36G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-36G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-36G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-36G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-36G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-36G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-36G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-36G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-36G>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/22-35742900-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742900
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742900
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 119362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-23C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-23C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-23C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-23C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-23C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-23C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-23C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-23C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-23C>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

22-35742913-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742913
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742913
    reference: chr 22
allele count: 3
allele frequency: 2.50363026388263e-5
allele num: 119826
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-10A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-10A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-10A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-10A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-10A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-10A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-10A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-10A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-10A>G
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27283
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/22-35742914-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742914
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742914
    reference: chr 22
allele count: 2
allele frequency: 1.668390670359371e-5
allele num: 119876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1122-9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1285-9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1285-9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1381-9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1186-9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1171-9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1150-9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*486-9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1600-9C>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12816
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

22-35742925-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742925
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742925
    reference: chr 22
allele count: 34413
allele frequency: 2.855898023203705e-1
allele num: 120498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1173T>G
  hgvsp: ENST00000436462.2:c.1173T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1152T>G
  hgvsp: ENST00000425375.1:c.1152T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*488T>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1383T>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1602T>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1287T>G
  hgvsp: ENST00000449058.2:c.1287T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1124T>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1287T>G
  hgvsp: ENST00000411850.1:c.1287T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1188T>G
  hgvsp: ENST00000447733.1:c.1188T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 384
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.25e1
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 4.75e1
  variant carriers: 411
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.75e1
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 12282
  bin: 2.75e1
  variant carriers: 723
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 285
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 2.25e1
  variant carriers: 576
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20612
  bin: 9.75e1
  variant carriers: 20464
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 8.75e1
  variant carriers: 600
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 614
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.25e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 3.75e1
  variant carriers: 671
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 9.25e1
  variant carriers: 682
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 3.25e1
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 8.25e1
  variant carriers: 541
genotype quality: GenotypeQuality
  all individuals: 4934
  bin: 6.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 7.75e1
  variant carriers: 93
hgvs: c.1287T>G
num of homozygotes: 5798
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

22-35742932-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742932
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742932
    reference: chr 22
allele count: 1
allele frequency: 8.309512730173502e-6
allele num: 120344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1294G>A
  hgvsp: ENSP00000394466.2:p.Ala432Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1131G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1180G>A
  hgvsp: ENSP00000402556.2:p.Ala394Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*495G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1159G>A
  hgvsp: ENSP00000394924.1:p.Ala387Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1294G>A
  hgvsp: ENSP00000413697.1:p.Ala432Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1609G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1390G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1195G>A
  hgvsp: ENSP00000398876.1:p.Ala399Thr
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala432Thr
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

22-35742933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742933
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742933
    reference: chr 22
allele count: 97
allele frequency: 8.061165129227957e-4
allele num: 120330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1391C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1196C>T
  hgvsp: ENSP00000398876.1:p.Ala399Val
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1610C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1181C>T
  hgvsp: ENSP00000402556.2:p.Ala394Val
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1132C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1295C>T
  hgvsp: ENSP00000394466.2:p.Ala432Val
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1160C>T
  hgvsp: ENSP00000394924.1:p.Ala387Val
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1295C>T
  hgvsp: ENSP00000413697.1:p.Ala432Val
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*496C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 9.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9324
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala432Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

22-35742934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742934
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742934
    reference: chr 22
allele count: 3
allele frequency: 2.493309619188511e-5
allele num: 120322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1197G>A
  hgvsp: ENST00000447733.1:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1611G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1296G>A
  hgvsp: ENST00000449058.2:c.1296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1392G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1182G>A
  hgvsp: ENST00000436462.2:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1133G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1296G>A
  hgvsp: ENST00000411850.1:c.1296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*497G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1161G>A
  hgvsp: ENST00000425375.1:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala432Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

22-35742946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742946
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742946
    reference: chr 22
allele count: 3
allele frequency: 2.49409730304945e-5
allele num: 120284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1173G>A
  hgvsp: ENST00000425375.1:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1404G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*509G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1623G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1308G>A
  hgvsp: ENST00000449058.2:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1308G>A
  hgvsp: ENST00000411850.1:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1145G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1194G>A
  hgvsp: ENST00000436462.2:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1209G>A
  hgvsp: ENST00000447733.1:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5970
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys436Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

22-35742946-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742946
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742946
    reference: chr 22
allele count: 2
allele frequency: 1.6627315353663e-5
allele num: 120284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1209G>C
  hgvsp: ENSP00000398876.1:p.Lys403Asn
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1623G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1173G>C
  hgvsp: ENSP00000394924.1:p.Lys391Asn
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1308G>C
  hgvsp: ENSP00000394466.2:p.Lys436Asn
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*509G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1404G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1145G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1308G>C
  hgvsp: ENSP00000413697.1:p.Lys436Asn
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1194G>C
  hgvsp: ENSP00000402556.2:p.Lys398Asn
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys436Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS

22-35742947-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742947
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742947
    reference: chr 22
allele count: 1
allele frequency: 8.313381218409152e-6
allele num: 120288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1210G>C
  hgvsp: ENSP00000398876.1:p.Gly404Arg
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1195G>C
  hgvsp: ENSP00000402556.2:p.Gly399Arg
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1624G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1405G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1309G>C
  hgvsp: ENSP00000413697.1:p.Gly437Arg
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1174G>C
  hgvsp: ENSP00000394924.1:p.Gly392Arg
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1309G>C
  hgvsp: ENSP00000394466.2:p.Gly437Arg
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1146G>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*510G>C
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2948
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly437Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

22-35742947-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742947
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742947
    reference: chr 22
allele count: 1
allele frequency: 8.313381218409152e-6
allele num: 120288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*510G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1210G>T
  hgvsp: ENSP00000398876.1:p.Gly404Trp
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1174G>T
  hgvsp: ENSP00000394924.1:p.Gly392Trp
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1195G>T
  hgvsp: ENSP00000402556.2:p.Gly399Trp
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1309G>T
  hgvsp: ENSP00000394466.2:p.Gly437Trp
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1309G>T
  hgvsp: ENSP00000413697.1:p.Gly437Trp
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1405G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1146G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1624G>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly437Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

22-35742948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742948
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742948
    reference: chr 22
allele count: 1
allele frequency: 8.31255195344971e-6
allele num: 120300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1310G>A
  hgvsp: ENSP00000394466.2:p.Gly437Glu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1310G>A
  hgvsp: ENSP00000413697.1:p.Gly437Glu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1147G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1625G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1406G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1211G>A
  hgvsp: ENSP00000398876.1:p.Gly404Glu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1175G>A
  hgvsp: ENSP00000394924.1:p.Gly392Glu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1196G>A
  hgvsp: ENSP00000402556.2:p.Gly399Glu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*511G>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18218
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly437Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

22-35742949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742949
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742949
    reference: chr 22
allele count: 1
allele frequency: 8.313657676831499e-6
allele num: 120284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1407G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1311G>A
  hgvsp: ENST00000449058.2:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1197G>A
  hgvsp: ENST00000436462.2:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1626G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1148G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1176G>A
  hgvsp: ENST00000425375.1:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1311G>A
  hgvsp: ENST00000411850.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*512G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1212G>A
  hgvsp: ENST00000447733.1:c.1212G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly437Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

22-35742958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742958
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742958
    reference: chr 22
allele count: 4
allele frequency: 3.328230047260866e-5
allele num: 120184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1185C>T
  hgvsp: ENST00000425375.1:c.1185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1320C>T
  hgvsp: ENST00000449058.2:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1206C>T
  hgvsp: ENST00000436462.2:c.1206C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1221C>T
  hgvsp: ENST00000447733.1:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*521C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1416C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1635C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1320C>T
  hgvsp: ENST00000411850.1:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1157C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser440Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

22-35742959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742959
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742959
    reference: chr 22
allele count: 7
allele frequency: 5.824790307548928e-5
allele num: 120176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1158G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1321G>A
  hgvsp: ENSP00000413697.1:p.Glu441Lys
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1321G>A
  hgvsp: ENSP00000394466.2:p.Glu441Lys
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1207G>A
  hgvsp: ENSP00000402556.2:p.Glu403Lys
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1636G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1417G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1186G>A
  hgvsp: ENSP00000394924.1:p.Glu396Lys
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1222G>A
  hgvsp: ENSP00000398876.1:p.Glu408Lys
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*522G>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu441Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

22-35742961-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742961
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742961
    reference: chr 22
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1323A>G
  hgvsp: ENST00000449058.2:c.1323A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1188A>G
  hgvsp: ENST00000425375.1:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1323A>G
  hgvsp: ENST00000411850.1:c.1323A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1224A>G
  hgvsp: ENST00000447733.1:c.1224A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1419A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1160A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1638A>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1209A>G
  hgvsp: ENST00000436462.2:c.1209A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*524A>G
  variant of: http://identifiers.org/hgnc/11982
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
hgvs: c.*524A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

22-35742961-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742961
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742960
    reference: chr 22
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+1delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+1delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+1delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+1delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1226delG
  hgvsp: ENSP00000398876.1:p.Gly409ValfsTer112
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+1delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+1delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1325delG
  hgvsp: ENSP00000413697.1:p.Gly442ValfsTer112
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+1delG
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly442ValfsTer112
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: AG
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

22-35742965-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742965
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742964
    reference: chr 22
allele count: 1
allele frequency: 8.325285557294615e-6
allele num: 120116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+4delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+4delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+4delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+4delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+1delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+1delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+4delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+4delG
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+4delG
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5894
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1327+1delG
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: AG
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/22-35742971-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742971
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742971
    reference: chr 22
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+6C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+6C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+9C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+9C>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5829
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1327+6C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/22-35742972-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742972
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742972
    reference: chr 22
allele count: 1
allele frequency: 8.35282325425994e-6
allele num: 119720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+7C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+10C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+7C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+10C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+10C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+10C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+10C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+10C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+10C>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1327+7C>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

22-35742972-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742972
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742972
    reference: chr 22
allele count: 1
allele frequency: 8.35282325425994e-6
allele num: 119720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+10C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+10C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+10C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+10C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+7C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+10C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+7C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+10C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+10C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1327+7C>T
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

22-35742974-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742974
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742974
    reference: chr 22
allele count: 42
allele frequency: 3.506487000951761e-4
allele num: 119778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+12C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+9C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+12C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+12C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+12C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+12C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+12C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+12C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+9C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13243
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9198
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

22-35742975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742975
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742975
    reference: chr 22
allele count: 57
allele frequency: 4.757135703555333e-4
allele num: 119820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+13G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+13G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+13G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+13G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+13G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+10G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+10G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+13G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+13G>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13321
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

22-35742976-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742976
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742976
    reference: chr 22
allele count: 8
allele frequency: 6.675233215960482e-5
allele num: 119846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+14C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+14C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+11C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+11C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+14C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+14C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+14C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+14C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+14C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9117
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13350
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

22-35742984-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742984
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742984
    reference: chr 22
allele count: 8
allele frequency: 6.680696128536593e-5
allele num: 119748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+22C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+19C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+22C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+19C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+22C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+22C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+22C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+22C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+22C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

22-35742985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742985
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742985
    reference: chr 22
allele count: 10
allele frequency: 8.355196096452384e-5
allele num: 119686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+23G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+23G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+23G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+23G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+23G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+23G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+20G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+23G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+20G>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25160
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

22-35742985-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742985
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742985
    reference: chr 22
allele count: 2
allele frequency: 1.671039219290477e-5
allele num: 119686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+23G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+23G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+23G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+23G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+23G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+20G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+20G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+23G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+23G>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5433
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

22-35742986-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742986
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742986
    reference: chr 22
allele count: 1
allele frequency: 8.352544184958738e-6
allele num: 119724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+24C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+24C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+24C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+24C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+24C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+24C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+21C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+24C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+21C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

22-35742988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742988
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742988
    reference: chr 22
allele count: 6
allele frequency: 5.01378791677112e-5
allele num: 119670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+26C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+26C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+26C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+26C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+26C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+26C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+26C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

22-35742999-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35742999
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35742999
    reference: chr 22
allele count: 1
allele frequency: 8.362742310458446e-6
allele num: 119578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+34C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+37C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+34C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD

22-35743002-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743002
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743002
    reference: chr 22
allele count: 1
allele frequency: 8.365540664893172e-6
allele num: 119538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*525+40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1639+40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1161+40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1324+40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1228+37G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1420+40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1189+40G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1327+37G>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1210+40G>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16402
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/22-35743012-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743012
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743012
    reference: chr 22
allele count: 2
allele frequency: 1.673920321392702e-5
allele num: 119480
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1328-36C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1640-36C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1229-36C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1211-36C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1190-36C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*526-36C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1325-36C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1162-36C>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1421-36C>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

22-35743025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743025
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743025
    reference: chr 22
allele count: 1
allele frequency: 8.37408722449253e-6
allele num: 119416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1190-23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1211-23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1229-23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1162-23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1640-23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*526-23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1328-23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1421-23C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1325-23C>T
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

22-35743031-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743031
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743031
    reference: chr 22
allele count: 2
allele frequency: 1.67464916100077e-5
allele num: 119428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1421-17C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*526-17C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1640-17C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1328-17C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1162-17C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1190-17C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1229-17C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1325-17C>G
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1211-17C>G
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25150
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

22-35743059-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743059
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743059
    reference: chr 22
allele count: 1
allele frequency: 8.354637659364713e-6
allele num: 119694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1240T>C
  hgvsp: ENSP00000398876.1:p.Phe414Leu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1173T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*537T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1201T>C
  hgvsp: ENSP00000394924.1:p.Phe401Leu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1339T>C
  hgvsp: ENSP00000413697.1:p.Phe447Leu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1432T>C
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1336T>C
  hgvsp: ENSP00000394466.2:p.Phe446Leu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1222T>C
  hgvsp: ENSP00000402556.2:p.Phe408Leu
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1651T>C
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8686
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe447Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

22-35743071-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743071
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743071
    reference: chr 22
allele count: 2
allele frequency: 1.669365474183263e-5
allele num: 119806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1444C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1252C>T
  hgvsp: ENSP00000398876.1:p.Arg418Trp
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1185C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1351C>T
  hgvsp: ENSP00000413697.1:p.Arg451Trp
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1348C>T
  hgvsp: ENSP00000394466.2:p.Arg450Trp
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1213C>T
  hgvsp: ENSP00000394924.1:p.Arg405Trp
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*549C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1663C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1234C>T
  hgvsp: ENSP00000402556.2:p.Arg412Trp
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13336
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg451Trp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

22-35743072-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743072
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743072
    reference: chr 22
allele count: 3
allele frequency: 2.50300360432519e-5
allele num: 119856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1214G>A
  hgvsp: ENSP00000394924.1:p.Arg405Gln
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1253G>A
  hgvsp: ENSP00000398876.1:p.Arg418Gln
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1235G>A
  hgvsp: ENSP00000402556.2:p.Arg412Gln
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1352G>A
  hgvsp: ENSP00000413697.1:p.Arg451Gln
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1664G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*550G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1445G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1349G>A
  hgvsp: ENSP00000394466.2:p.Arg450Gln
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1186G>A
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13381
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25156
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg451Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

22-35743074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743074
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743074
    reference: chr 22
allele count: 1
allele frequency: 8.339588024351597e-6
allele num: 119910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1666G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1216G>A
  hgvsp: ENSP00000394924.1:p.Ala406Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1351G>A
  hgvsp: ENSP00000394466.2:p.Ala451Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1188G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1447G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1237G>A
  hgvsp: ENSP00000402556.2:p.Ala413Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*552G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1255G>A
  hgvsp: ENSP00000398876.1:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1354G>A
  hgvsp: ENSP00000413697.1:p.Ala452Thr
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala452Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

22-35743082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743082
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743082
    reference: chr 22
allele count: 10
allele frequency: 8.328752519447637e-5
allele num: 120066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1359C>T
  hgvsp: ENST00000449058.2:c.1359C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1196C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1245C>T
  hgvsp: ENST00000436462.2:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1224C>T
  hgvsp: ENST00000425375.1:c.1224C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1674C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1263C>T
  hgvsp: ENST00000447733.1:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*560C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1455C>T
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1362C>T
  hgvsp: ENST00000411850.1:c.1362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13540
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala454Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

22-35743083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35743083
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 35743083
    reference: chr 22
allele count: 21
allele frequency: 1.748571999533714e-4
allele num: 120098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000397492
  ensembl transcript: ENST00000424387
  gene symbol: TOM1
  hgvsc: ENST00000424387.1:c.*1197G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394924
  ensembl transcript: ENST00000425375
  gene symbol: TOM1
  hgvsc: ENST00000425375.1:c.1225G>A
  hgvsp: ENSP00000394924.1:p.Ala409Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000371465
  ensembl transcript: ENST00000382034
  gene symbol: TOM1
  hgvsc: ENST00000382034.5:c.*561G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100284
  ensembl transcript: ENST00000492723
  gene symbol: TOM1
  hgvsc: ENST00000492723.1:n.1675G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000394466
  ensembl transcript: ENST00000449058
  gene symbol: TOM1
  hgvsc: ENST00000449058.2:c.1360G>A
  hgvsp: ENSP00000394466.2:p.Ala454Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000402556
  ensembl transcript: ENST00000436462
  gene symbol: TOM1
  hgvsc: ENST00000436462.2:c.1246G>A
  hgvsp: ENSP00000402556.2:p.Ala416Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000398876
  ensembl transcript: ENST00000447733
  gene symbol: TOM1
  hgvsc: ENST00000447733.1:c.1264G>A
  hgvsp: ENSP00000398876.1:p.Ala422Thr
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000385906
  ensembl transcript: ENST00000404284
  gene symbol: TOM1
  hgvsc: ENST00000404284.2:c.*1456G>A
  variant of: http://identifiers.org/hgnc/11982
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100284
  ensembl protein: ENSP00000413697
  ensembl transcript: ENST00000411850
  gene symbol: TOM1
  hgvsc: ENST00000411850.1:c.1363G>A
  hgvsp: ENSP00000413697.1:p.Ala455Thr
  variant of: http://identifiers.org/hgnc/11982
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13549
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala455Thr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 10589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29951
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2948
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6325
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.524e0

DP
type: SiteQuality
SIO_000300: 1.997436e6

QD
type: SiteQuality
SIO_000300: 6.23e0

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

FS
type: SiteQuality
SIO_000300: 7.279e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6324
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2949
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.107e0

DP
type: SiteQuality
SIO_000300: 1.997747e6

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.443e1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10598
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.998116e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.426e0

FS
type: SiteQuality
SIO_000300: 2.694e0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6325
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993766482857828e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

FS
type: SiteQuality
SIO_000300: 2.464e0

QD
type: SiteQuality
SIO_000300: 1.225e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.998484e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6321
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10597
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.384e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

DP
type: SiteQuality
SIO_000300: 1.998317e6

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
SIO_000300: 1.151e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.277e0

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

GenotypeQuality
all individuals: 1281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29950
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6318
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49243264303054e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.28e-1

DP
type: SiteQuality
SIO_000300: 1.998292e6

QD
type: SiteQuality
SIO_000300: 1.228e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

FS
type: SiteQuality
SIO_000300: 6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.314e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-1

DP
type: SiteQuality
SIO_000300: 1.997979e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.997889e6

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.5e-1

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.997e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.997829e6

QD
type: SiteQuality
SIO_000300: 1.443e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6312
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.436e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.997831e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.871e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.37e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4364
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.432e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.331e0

FS
type: SiteQuality
SIO_000300: 4.381e0

DP
type: SiteQuality
SIO_000300: 1.997876e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 29934
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

FS
type: SiteQuality
SIO_000300: 1.728e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.425e1

DP
type: SiteQuality
SIO_000300: 1.997632e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.97e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.69e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.997664e6

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.074e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.014e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.72e-1

DP
type: SiteQuality
SIO_000300: 1.997086e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.997086e6

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6308
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 1.996777e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

GenotypeQuality
all individuals: 10570
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29915
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519756838905775e-4
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 1.996667e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

QD
type: SiteQuality
SIO_000300: 6.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.043e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: -2.476e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.199e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.22e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.59e-1

DP
type: SiteQuality
SIO_000300: 1.996063e6

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2420
bin: 9.25e1
variant carriers: 58

GenotypeQuality
all individuals: 1482
bin: 8.75e1
variant carriers: 32

GenotypeQuality
all individuals: 140
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2123
bin: 8.25e1
variant carriers: 48

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1982
bin: 7.75e1
variant carriers: 46

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 16

GenotypeQuality
all individuals: 220
bin: 3.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1788
bin: 6.75e1
variant carriers: 28

GenotypeQuality
all individuals: 45689
bin: 9.75e1
variant carriers: 19238

GenotypeQuality
all individuals: 2345
bin: 6.25e1
variant carriers: 22

African
type: Population
allele count: 1345
allele frequency: 1.295511462146022e-1
allele num: 10382
num of homozygotes: 102

East Asian
type: Population
allele count: 3413
allele frequency: 3.968604651162791e-1
allele num: 8600
num of homozygotes: 692

Other
type: Population
allele count: 158
allele frequency: 1.747787610619469e-1
allele num: 904
num of homozygotes: 16

South Asian
type: Population
allele count: 1563
allele frequency: 9.469283896764813e-2
allele num: 16506
num of homozygotes: 82

European (Finnish)
type: Population
allele count: 1460
allele frequency: 2.220194647201947e-1
allele num: 6576
num of homozygotes: 153

Latino
type: Population
allele count: 3678
allele frequency: 3.189386056191467e-1
allele num: 11532
num of homozygotes: 624

European (Non-Finnish)
type: Population
allele count: 10493
allele frequency: 1.577420324714372e-1
allele num: 66520
num of homozygotes: 853

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 1.695e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 3.040481e6

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.445e0

GenotypeQuality
all individuals: 318
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 375
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2701
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40860
bin: 9.75e1
variant carriers: 1717

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2916
bin: 8.25e1
variant carriers: 1

African
type: Population
allele count: 29
allele frequency: 2.792758089368259e-3
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 178
allele frequency: 2.698605215281989e-2
allele num: 6596
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 1263
allele frequency: 1.896738151018201e-2
allele num: 66588
num of homozygotes: 21

Other
type: Population
allele count: 10
allele frequency: 1.103752759381899e-2
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 73
allele frequency: 4.421562689279224e-3
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 196
allele frequency: 1.696088611976462e-2
allele num: 11556
num of homozygotes: 5

East Asian
type: Population
allele count: 5
allele frequency: 5.780346820809249e-4
allele num: 8650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.598e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

QD
type: SiteQuality
SIO_000300: 1.506e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.907014e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.05e0

GenotypeQuality
all individuals: 4955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27281
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.584492191081635e-5
allele num: 65438
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.96078431372549e-4
allele num: 10200
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 6.827e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.484155e6

GenotypeQuality
all individuals: 852
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27281
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.803921568627451e-5
allele num: 10200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

FS
type: SiteQuality
SIO_000300: 6.827e0

DP
type: SiteQuality
SIO_000300: 3.484155e6

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

GenotypeQuality
all individuals: 14159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.34246896228625e-4
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528164063693878e-5
allele num: 65438
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 3.484473e6

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 1.33e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

GenotypeQuality
all individuals: 616
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27275
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 556
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.484473e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.33e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

GenotypeQuality
all individuals: 953
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1882
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GenotypeQuality
all individuals: 1167
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.803921568627451e-5
allele num: 10200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65466
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

FS
type: SiteQuality
SIO_000300: 2.632e0

VQSLOD
type: SiteQuality
SIO_000300: -9.556e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

DP
type: SiteQuality
SIO_000300: 3.48469e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.682e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

GenotypeQuality
all individuals: 27271
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65476
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.317e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

DP
type: SiteQuality
SIO_000300: 3.486952e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 2.3e0

QD
type: SiteQuality
SIO_000300: 1.494e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.107056704021496e-5
allele num: 65498
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15588
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e0

DP
type: SiteQuality
SIO_000300: 3.48809e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

FS
type: SiteQuality
SIO_000300: 3.507e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.041e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.053714844107857e-5
allele num: 65494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.568e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 3.489194e6

QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1894
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.206694356217933e-4
allele num: 65488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.808e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

DP
type: SiteQuality
SIO_000300: 3.49297e6

QD
type: SiteQuality
SIO_000300: 1.28e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526344709689236e-5
allele num: 65516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.809691975671964e-5
allele num: 10194
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 3
allele frequency: 1.914486279514997e-4
allele num: 15670
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8534
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 4.922e0

DP
type: SiteQuality
SIO_000300: 3.493614e6

BaseQRankSum
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SIO_000300: 1.81e0

ClippingRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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VQSLOD
type: SiteQuality
SIO_000300: -1.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.448e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 3.44e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518971959777622e-5
allele num: 65834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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South Asian
type: Population
allele count: 2
allele frequency: 1.235788433020267e-4
allele num: 16184
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
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ClippingRankSum
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SIO_000300: 2.51e-1

FS
type: SiteQuality
SIO_000300: 3.799e0

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2666
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GenotypeQuality
all individuals: 1196
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.234263144902493e-4
allele num: 16204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.003e0

QD
type: SiteQuality
SIO_000300: 3.158e1

DP
type: SiteQuality
SIO_000300: 3.521799e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.456e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 394
bin: 2.25e1
variant carriers: 13

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 26

GenotypeQuality
all individuals: 1831
bin: 7.25e1
variant carriers: 49

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 50

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 28

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 30

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 38

GenotypeQuality
all individuals: 1107
bin: 9.25e1
variant carriers: 97

GenotypeQuality
all individuals: 15415
bin: 6.25e1
variant carriers: 66

GenotypeQuality
all individuals: 815
bin: 8.75e1
variant carriers: 67

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 56

GenotypeQuality
all individuals: 1724
bin: 8.25e1
variant carriers: 73

GenotypeQuality
all individuals: 31334
bin: 9.75e1
variant carriers: 27905

Other
type: Population
allele count: 255
allele frequency: 2.827050997782705e-1
allele num: 902
num of homozygotes: 41

African
type: Population
allele count: 6312
allele frequency: 6.112725159790819e-1
allele num: 10326
num of homozygotes: 1948

Latino
type: Population
allele count: 4329
allele frequency: 3.754553339115351e-1
allele num: 11530
num of homozygotes: 846

East Asian
type: Population
allele count: 987
allele frequency: 1.154115996258185e-1
allele num: 8552
num of homozygotes: 48

European (Finnish)
type: Population
allele count: 1668
allele frequency: 2.524213075060533e-1
allele num: 6608
num of homozygotes: 190

South Asian
type: Population
allele count: 4699
allele frequency: 2.861753958587089e-1
allele num: 16420
num of homozygotes: 724

European (Non-Finnish)
type: Population
allele count: 16163
allele frequency: 2.443016928657799e-1
allele num: 66160
num of homozygotes: 2001

QD
type: SiteQuality
SIO_000300: 1.65e1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

FS
type: SiteQuality
SIO_000300: 5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 4.628815e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
all individuals: 1072
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5953
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18088
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 25282
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512721991952319e-5
allele num: 66106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.956e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.703e0

DP
type: SiteQuality
SIO_000300: 2.866866e6

QD
type: SiteQuality
SIO_000300: 1.603e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 25298
bin: 9.75e1
variant carriers: 97

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5948
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
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variant carriers: 0

GenotypeQuality
all individuals: 18057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.604166666666667e-4
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 92
allele frequency: 8.951157812804048e-3
allele num: 10278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66100
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 2.867967e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

QD
type: SiteQuality
SIO_000300: 1.187e1

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 18098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5978
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25239
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.025901718712176e-5
allele num: 66096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.862754e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 824
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 2951
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 1070
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 25230
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1397
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.539264639128461e-5
allele num: 66090
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.055e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

DP
type: SiteQuality
SIO_000300: 2.862014e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 18211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25230
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.220852154804053e-4
allele num: 16382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.862014e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

QD
type: SiteQuality
SIO_000300: 1.055e1

FS
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
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GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 1070
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5968
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.071e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

FS
type: SiteQuality
SIO_000300: 5.141e0

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

DP
type: SiteQuality
SIO_000300: 2.861303e6

QD
type: SiteQuality
SIO_000300: 1.031e1

MQ
type: SiteQuality
SIO_000300: 5.865e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

VQSLOD
type: SiteQuality
SIO_000300: -1.392e0

GenotypeQuality
all individuals: 2948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5968
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25224
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.51308821304282e-5
allele num: 66090
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.865e1

MQRankSum
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SIO_000300: 2.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

QD
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SIO_000300: 1.031e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.74089226573154e-5
allele num: 10266
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Latino
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.512996641147457e-5
allele num: 66094
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11510
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African
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Other
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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FS
type: SiteQuality
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QD
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VQSLOD
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BaseQRankSum
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SIO_000300: -1.23e-1

ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.771350400625366e-5
allele num: 10234
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514004542013626e-5
allele num: 66050
num of homozygotes: 0

South Asian
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allele frequency: 1.222942399412988e-4
allele num: 16354
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.73e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.085127646043427e-5
allele num: 66042
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Other
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East Asian
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allele frequency: 1.172607879924953e-4
allele num: 8528
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African
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -8.68e-1

InbreedingCoeff
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MQRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
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allele num: 66054
num of homozygotes: 0

Other
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European (Finnish)
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African
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Latino
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South Asian
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East Asian
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.513912859175826e-5
allele num: 66054
num of homozygotes: 0

East Asian
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European (Finnish)
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African
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Latino
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South Asian
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Other
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DP
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MQRankSum
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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Other
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European (Finnish)
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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Latino
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South Asian
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African
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.67e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: -3.102e-1

FS
type: SiteQuality
SIO_000300: 6.128e0

DP
type: SiteQuality
SIO_000300: 2.84785e6

QD
type: SiteQuality
SIO_000300: 8.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517957436473481e-5
allele num: 65878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.292e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.758e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.213e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e-1

DP
type: SiteQuality
SIO_000300: 2.84089e6

GenotypeQuality
all individuals: 1371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5450
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517957436473481e-5
allele num: 65878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.292e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e-1

DP
type: SiteQuality
SIO_000300: 2.84089e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.758e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.213e0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16399
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 41

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2010
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17343346632246e-4
allele num: 8522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.034532985373551e-5
allele num: 65908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 2.399114173228347e-3
allele num: 16256
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

FS
type: SiteQuality
SIO_000300: 1.153e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.839191e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 1.352e1

GenotypeQuality
all individuals: 1388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 93
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GenotypeQuality
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GenotypeQuality
all individuals: 25204
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variant carriers: 56

GenotypeQuality
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 16609
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5468
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.976284584980237e-4
allele num: 10120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 5.612182987501517e-4
allele num: 65928
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.217294900221729e-3
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.615384615384615e-4
allele num: 16250
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

DP
type: SiteQuality
SIO_000300: 2.837094e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.687e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 1.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

QD
type: SiteQuality
SIO_000300: 1.175e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

GenotypeQuality
all individuals: 16805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25178
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1044
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variant carriers: 0

GenotypeQuality
all individuals: 1366
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GenotypeQuality
all individuals: 2015
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 252
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GenotypeQuality
all individuals: 5476
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2738
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variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.307692307692308e-4
allele num: 16250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.853e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 1.213e0

QD
type: SiteQuality
SIO_000300: 1.519e1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.73e-1

DP
type: SiteQuality
SIO_000300: 2.834e6

GenotypeQuality
all individuals: 1462
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2015
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.551247041689423e-5
allele num: 65916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.085277057879798e-4
allele num: 16206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.619e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

DP
type: SiteQuality
SIO_000300: 2.82858e6

FS
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 1363
bin: 9.25e1
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GenotypeQuality
all individuals: 1463
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.945303210463733e-4
allele num: 10092
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.699248120300752e-4
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.186e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 2.826936e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.929e0

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1045
bin: 8.75e1
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GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.034348828741352e-5
allele num: 65912
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 2.826936e6

FS
type: SiteQuality
SIO_000300: 1.186e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.929e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
all individuals: 423
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516806212838248e-5
allele num: 65928
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
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ClippingRankSum
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SIO_000300: -1.7e-2

MQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.777e0

FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

DP
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SIO_000300: 2.825535e6

QD
type: SiteQuality
SIO_000300: 1.445e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 3.711952487008166e-4
allele num: 16164
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10084
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65878
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.200396825396825e-5
allele num: 16128
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
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African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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SIO_000300: 9.389999999999999e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.175917215428034e-4
allele num: 8504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65858
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.438e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.336e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.121e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.036652394400413e-5
allele num: 65862
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

BaseQRankSum
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SIO_000300: -1.991e0

DP
type: SiteQuality
SIO_000300: 2.813669e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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DP
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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South Asian
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European (Non-Finnish)
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allele num: 65830
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Latino
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European (Finnish)
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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QD
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
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VQSLOD
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QD
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-5
allele num: 66020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.178178672927221e-5
allele num: 16186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 2.834468e6

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

FS
type: SiteQuality
SIO_000300: 7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.672e0

VQSLOD
type: SiteQuality
SIO_000300: 3.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18401
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2059
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514096235956757e-5
allele num: 66046
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.234415504258734e-4
allele num: 16202
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.098e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.836189e6

GenotypeQuality
all individuals: 237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513454611496201e-5
allele num: 66074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e0

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.398e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.765e0

DP
type: SiteQuality
SIO_000300: 2.837096e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.37e-1

GenotypeQuality
all individuals: 18597
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5675
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25164
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1062
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.068923821039904e-5
allele num: 66160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.845472440944882e-4
allele num: 16256
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.204e1

DP
type: SiteQuality
SIO_000300: 2.842143e6

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 1.115e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2088
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25168
bin: 9.75e1
variant carriers: 21

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0